Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011895.1 Kokia drynarioides strain JFW-HI SEQ_126892, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1857
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:625 original size:21 final size:21

Alignment explanation


    Indices: 599--641  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        589 TAGGGTCCAT

                         *       
        599 TTGCCCCGGAGGAGTAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

                  *              
        620 TTGCCCGGGAGGAATAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

             
        641 T
          1 T

        642 CGCGATGGCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.16, G:0.37, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTA

Found at i:766 original size:45 final size:45

Alignment explanation


    Indices: 654--772  Score: 166
    Period size: 45  Copynumber: 2.6  Consensus size: 45

        644 CGATGGCTTA

                   *  *           **      *   *          
        654 TCAAACTCAGCCTGATATCCTTCCCTTGAGTAATGCGGTGGCTCG
          1 TCAAACTGAGGCTGATATCCTTGGCTTGAGCAATACGGTGGCTCG

                 *                          *            
        699 TCAAATTGAGGCTGATATCCTTGGCTTGAGCATTACGGTGGCTCG
          1 TCAAACTGAGGCTGATATCCTTGGCTTGAGCAATACGGTGGCTCG

                                         
        744 TCAAACTGAGGCTGATATCCTTGGCTTGA
          1 TCAAACTGAGGCTGATATCCTTGGCTTGA

        773 TGAGCTATGC


Statistics
Matches: 65,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   65  1.00

ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30


Consensus pattern (45 bp):   
TCAAACTGAGGCTGATATCCTTGGCTTGAGCAATACGGTGGCTCG
Done.