genome.fa.s11899.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011899.1 Kokia drynarioides strain JFW-HI SEQ_126896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143884

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1225--1304	42	1.9	42	94	0	142	41	3	52	2	1.33
1358--1402	23	2.0	23	86	8	65	60	0	2	37	1.09
1564--1638	36	2.1	36	97	0	141	29	6	16	48	1.71
6752--6800	24	2.0	25	84	11	66	53	10	14	22	1.71
7504--7561	20	2.9	20	69	19	57	31	8	6	53	1.58
18690--18714	2	12.5	2	100	0	50	52	0	0	48	1.00
23913--23941	12	2.3	13	94	5	51	72	0	0	27	0.85
32108--32205	49	2.0	49	97	0	187	43	2	21	32	1.64
34200--34284	30	2.8	30	83	0	107	27	12	22	37	1.91
42660--42687	2	14.0	2	100	0	56	50	0	0	50	1.00
49650--49698	23	2.2	21	82	13	55	40	2	2	55	1.23
60324--60382	30	2.1	27	80	19	77	44	10	6	38	1.65
61263--61335	31	2.5	31	79	18	84	46	1	2	49	1.24
63364--63406	22	2.0	22	90	0	68	51	0	0	48	1.00
66777--66825	24	2.0	24	88	7	73	40	0	0	59	0.98
66779--66831	24	2.3	23	83	9	63	45	1	0	52	1.11
81689--81730	9	5.0	8	88	5	57	4	14	0	80	0.86
81689--81736	17	2.8	16	79	14	60	4	14	2	79	0.98
91997--92193	98	2.0	98	98	0	385	36	16	8	39	1.79
93494--93580	42	2.1	42	86	0	120	31	17	14	36	1.90
100151--100367	115	1.9	115	100	0	434	34	19	16	29	1.94
102684--102731	22	2.3	19	82	13	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104576--104751	88	2.0	89	84	4	230	26	17	11	45	1.81
104908--105080	60	2.9	59	82	3	213	47	10	16	24	1.79
105134--105225	30	3.1	30	84	6	123	48	3	14	33	1.59
111460--111499	5	8.0	5	94	0	53	32	40	7	20	1.80
122079--122143	29	2.2	29	80	0	76	43	1	6	49	1.37
126744--126769	2	13.0	2	100	0	52	50	0	0	50	1.00
129892--129938	6	8.0	6	77	13	53	42	2	2	53	1.25
129863--129944	35	2.3	35	87	0	119	39	1	3	56	1.25
129892--129938	11	4.0	12	78	13	53	42	2	2	53	1.25
129863--129957	17	5.4	17	79	9	102	41	1	4	53	1.27
130684--130724	3	13.3	3	84	5	55	63	0	0	36	0.95
130684--130727	22	2.0	22	95	0	79	61	0	0	38	0.96
130684--130724	16	2.7	15	88	7	64	63	0	0	36	0.95
130675--130732	25	2.3	26	87	3	82	56	0	3	39	1.16
131816--132093	30	9.4	28	71	13	114	37	25	3	34	1.72
131854--132125	30	9.2	29	71	13	146	38	24	3	34	1.72
131815--132079	59	4.4	59	80	7	252	36	24	3	35	1.72
131815--132154	59	5.7	58	77	8	242	36	25	3	34	1.74
137804--137867	1	64.0	1	77	0	56	87	1	4	6	0.72
137788--137867	19	4.4	19	81	7	60	85	1	8	5	0.80
137791--137867	23	3.4	22	77	8	73	85	1	7	5	0.78
139069--139340	100	2.7	100	84	1	323	36	20	26	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139283--139458	49	3.6	48	75	9	151	37	22	25	14	1.92
139314--139544	97	2.3	99	81	7	256	40	19	25	13	1.89
139314--139596	100	2.9	100	79	7	290	39	18	26	15	1.90
139686--139871	101	1.8	101	89	2	293	33	18	17	30	1.95
139949--140159	39	5.4	39	67	4	147	27	32	16	23	1.95
139954--140159	78	2.6	78	84	3	254	27	32	16	23	1.96
140245--141057	206	3.9	206	88	1	1171	35	19	22	23	1.96
141384--141441	11	5.1	11	79	10	55	37	1	1	58	1.18
141386--141443	6	10.0	6	73	14	50	39	1	1	56	1.19
141386--141462	17	4.4	17	86	4	109	41	1	2	54	1.22
142824--142889	24	2.8	24	92	0	114	30	15	24	30	1.95
143356--143563	30	7.0	30	71	17	123	34	25	3	36	1.75
143341--143537	58	3.3	57	75	13	152	35	26	2	36	1.70
143431--143550	58	2.1	58	85	3	161	37	25	2	34	1.70

Tables:   1

The End!