genome.fa.s11902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011902.1 Kokia drynarioides strain JFW-HI SEQ_126900, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107104

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6990--7053	27	2.3	27	80	15	69	59	4	1	34	1.28
7575--7628	25	2.1	26	82	3	65	35	1	5	57	1.33
10524--10677	72	2.1	72	88	3	229	31	20	26	20	1.98
13678--13781	52	2.0	52	94	0	181	24	24	23	28	1.99
14366--14472	35	3.1	35	76	8	110	30	23	22	23	1.99
14402--14588	40	4.9	39	72	10	111	33	22	20	23	1.97
14336--14625	76	3.9	76	75	4	227	33	22	19	24	1.97
21812--21840	14	2.0	15	93	6	51	55	0	44	0	0.99
34226--34255	15	2.0	15	100	0	60	46	13	20	20	1.83
35544--35581	20	1.9	20	94	0	67	10	13	26	50	1.73
38062--38100	14	2.8	14	81	11	53	71	7	0	20	1.10
38522--38560	18	2.2	18	90	0	60	10	35	7	46	1.67
39124--39288	82	2.0	82	96	0	303	32	15	24	27	1.96
47106--47249	36	4.0	37	82	10	174	39	18	22	19	1.92
47106--47268	72	2.3	72	84	3	213	40	19	20	19	1.92
55442--55530	26	3.4	26	79	4	90	30	34	12	22	1.91
55494--55552	27	2.2	26	85	8	75	30	37	11	20	1.89
62902--62987	3	28.7	3	95	0	118	66	6	0	26	1.17
66761--66837	17	4.6	17	85	1	102	35	1	5	58	1.29
67475--67499	13	1.9	13	100	0	50	68	0	0	32	0.90
68274--68428	30	5.2	29	83	6	152	36	22	4	36	1.75
68275--68428	60	2.6	59	82	6	179	37	22	4	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69537--69677	36	3.9	36	89	0	201	33	10	21	34	1.88
69912--70046	64	2.1	65	85	2	182	17	13	26	42	1.85
70134--70227	39	2.4	39	89	1	134	36	4	19	40	1.71
70177--70306	68	1.9	68	93	0	224	37	5	20	36	1.75
70194--70306	32	3.4	33	69	23	92	38	6	19	35	1.77
70226--70354	58	2.2	58	81	1	159	35	4	20	39	1.73
79956--79996	22	1.9	21	95	5	73	65	0	34	0	0.93
80382--80439	16	3.4	18	73	23	54	17	15	8	58	1.61
81074--81115	2	21.0	2	95	0	75	47	0	2	50	1.14
85217--85266	24	2.0	24	85	11	66	28	6	4	62	1.37
86794--87029	100	2.3	101	86	2	323	26	24	25	23	2.00
87584--87612	14	2.1	14	100	0	58	44	27	0	27	1.54
87452--87740	142	2.0	144	88	5	433	40	20	4	34	1.73
87816--87847	2	16.0	2	100	0	64	50	0	0	50	1.00
87411--87834	128	3.1	139	73	20	454	40	18	5	36	1.73
90289--90389	43	2.3	43	86	3	132	18	25	25	29	1.98
91105--91151	20	2.3	20	96	0	85	53	0	0	46	1.00
91105--91151	9	4.7	10	82	17	62	53	0	0	46	1.00
92111--92183	20	3.5	20	73	14	74	52	0	1	46	1.09
94607--94719	36	3.2	36	88	1	165	30	8	23	36	1.86
94948--95083	66	2.1	66	85	2	184	17	11	26	44	1.82
95169--95280	49	2.3	49	89	1	163	38	4	17	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95216--95410	68	3.2	58	79	15	214	34	5	21	38	1.75
95220--95351	68	1.9	68	96	0	246	37	5	20	36	1.75
96297--96346	26	1.9	26	83	0	64	36	32	10	22	1.87
99891--99949	17	3.5	17	75	25	70	40	1	38	18	1.61
99892--99961	34	2.1	34	94	0	122	40	1	40	18	1.60
105368--105426	17	3.5	17	75	25	70	40	1	38	18	1.61
105369--105438	34	2.1	34	97	0	131	40	2	40	17	1.64

Tables:   1

The End!