genome.fa.s11905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011905.1 Kokia drynarioides strain JFW-HI SEQ_126903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  186543

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20852--20895	21	2.1	21	100	0	88	47	20	18	13	1.82
24404--24466	26	2.5	26	84	2	83	39	14	12	33	1.84
26433--26580	74	2.0	74	100	0	296	29	6	31	32	1.83
28429--28514	39	2.4	34	83	12	95	32	3	16	47	1.63
28388--28505	39	3.1	39	86	9	154	30	2	16	50	1.58
29740--29780	20	2.0	22	85	9	59	63	2	0	34	1.08
31010--31060	15	3.4	14	75	21	50	64	0	0	35	0.94
34003--34045	21	2.1	20	86	4	59	37	2	16	44	1.60
38434--38477	24	1.9	22	86	9	61	29	2	6	61	1.34
38450--38587	55	2.5	56	85	5	181	28	2	8	60	1.39
38450--38587	27	4.9	29	77	10	137	28	2	8	60	1.39
38784--38868	31	2.8	30	83	5	82	57	10	4	27	1.52
46107--46157	22	2.3	23	93	3	86	66	7	0	25	1.18
47473--47505	3	11.0	3	100	0	66	66	0	0	33	0.92
47504--47544	3	14.0	3	94	5	75	34	0	0	65	0.93
47512--47554	20	2.2	20	83	8	52	39	0	0	60	0.97
47797--47825	2	14.5	2	100	0	58	48	0	0	51	1.00
48835--48909	33	2.3	33	85	0	96	42	9	9	38	1.69
49235--49259	7	3.6	7	100	0	50	28	0	0	72	0.86
50934--50964	16	1.9	16	93	0	53	67	0	3	29	1.06
52152--52185	18	1.9	18	88	5	52	50	0	0	50	1.00
54258--54334	38	2.0	38	100	0	154	40	25	5	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54353--54403	13	3.0	19	63	31	51	33	5	3	56	1.42
54339--54403	32	2.1	32	97	2	123	35	6	3	55	1.40
93162--93229	23	3.2	20	71	16	57	44	2	0	52	1.16
93207--93249	19	2.1	21	83	12	54	48	0	2	48	1.14
93164--93287	53	2.2	52	80	9	131	43	3	2	50	1.31
93624--93667	21	2.0	22	86	4	63	45	2	0	52	1.13
99260--99391	66	2.0	66	93	0	228	34	22	12	30	1.91
103435--103485	22	2.3	23	86	6	70	64	1	0	33	1.05
105381--105514	59	2.3	59	84	2	180	27	15	6	50	1.69
111512--111576	26	2.5	27	77	7	80	40	4	9	46	1.57
115503--115542	17	2.4	18	80	16	50	67	10	15	7	1.41
117680--117748	29	2.4	29	90	4	104	31	11	7	49	1.66
125904--125941	18	2.2	18	90	9	62	65	0	15	18	1.27
126207--126248	18	2.3	18	92	8	68	73	0	0	26	0.83
128695--128733	21	1.9	20	89	5	60	58	0	0	41	0.98
132954--133118	43	3.9	42	80	12	133	27	26	9	36	1.86
133002--133148	43	3.4	43	86	2	188	26	28	11	33	1.91
136440--136770	30	11.2	29	81	6	337	39	0	22	36	1.60
136406--136681	90	3.1	90	79	7	212	40	1	22	34	1.65
153009--153076	26	2.6	26	81	4	66	32	22	14	30	1.94
157883--157940	28	2.1	28	87	6	82	25	13	24	36	1.92
157919--158041	56	2.2	55	75	7	124	22	17	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160448--160604	46	3.4	46	75	5	147	37	21	19	21	1.94
161750--161868	28	4.2	28	83	2	96	37	21	20	20	1.94
161748--161875	56	2.3	56	78	2	141	37	21	21	19	1.94
161990--162074	29	3.0	28	87	3	116	38	23	10	27	1.87
167946--167995	26	1.9	26	91	0	82	34	12	10	44	1.75
171815--171886	27	2.7	25	77	10	72	20	16	31	30	1.95
173590--173661	18	3.9	18	75	13	65	29	18	15	37	1.91
177266--177352	38	2.3	38	83	2	111	29	31	4	34	1.78
183022--183168	50	2.9	50	89	2	224	36	17	23	22	1.95
185402--185435	17	2.1	17	89	10	54	20	0	14	64	1.28
185990--186061	36	2.0	36	100	0	144	44	8	8	38	1.65
186499--186540	17	2.5	17	88	3	68	38	0	2	59	1.10

Tables:   1

The End!