Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011911.1 Kokia drynarioides strain JFW-HI SEQ_126909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 344796
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 122 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:547 original size:38 final size:39
Alignment explanation
Indices: 474--548 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 39
464 AAGTTAGAAT
*
474 TGATAAAGAGATTAAATTGTAAAAGAAGCTATAAATTTTG
1 TGATAAAGAGATTAAATTG-AAAAGAAGATATAAATTTTG
* *
514 TGATAGAGGGATTAAATTG-AAAGAA-ATATTAAATT
1 TGATAAAGAGATTAAATTGAAAAGAAGATA-TAAATT
549 AGGGTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 2 0.06
38 12 0.39
40 17 0.55
ACGTcount: A:0.48, C:0.01, G:0.19, T:0.32
Consensus pattern (39 bp):
TGATAAAGAGATTAAATTGAAAAGAAGATATAAATTTTG
Found at i:1002 original size:18 final size:18
Alignment explanation
Indices: 979--1015 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
969 CTTGTGATCA
979 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
997 AAATTGGAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
1015 A
1 A
1016 TATGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:8044 original size:17 final size:18
Alignment explanation
Indices: 8022--8057 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8012 TAAATGAGTT
8022 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
8039 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
8057 A
1 A
8058 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:8377 original size:18 final size:18
Alignment explanation
Indices: 8354--8390 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8344 TTTGTGATCA
8354 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
8372 AAATTGGAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
8390 A
1 A
8391 TATGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:14020 original size:21 final size:21
Alignment explanation
Indices: 13996--14046 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
13986 CCTACAACTT
13996 CTACCGATACAAGTATCCTAA
1 CTACCGATACAAGTATCCTAA
* *
14017 CTACTGATACATGTATCCTAA
1 CTACCGATACAAGTATCCTAA
*
14038 CTATCGATA
1 CTACCGATA
14047 AAACTCATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.29
Consensus pattern (21 bp):
CTACCGATACAAGTATCCTAA
Found at i:14694 original size:60 final size:60
Alignment explanation
Indices: 14601--14718 Score: 184
Period size: 60 Copynumber: 2.0 Consensus size: 60
14591 TTTCAACTTG
* * *
14601 CATTTGATACTCACGATGACATAGAGTCATCGGACCT-TTAATCCGTAATGGGATTCATTT
1 CATTTAATACTCACGATGACACAGAGTCATCGGACCTCTTAATCCGTAA-AGGATTCATTT
*
14661 CATTTAATACTCACGATGACACATAGTCATCGGACCTCTTAATCCGTAAAGGATTCAT
1 CATTTAATACTCACGATGACACAGAGTCATCGGACCTCTTAATCCGTAAAGGATTCAT
14719 ATACTCACGA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 42 0.79
61 11 0.21
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (60 bp):
CATTTAATACTCACGATGACACAGAGTCATCGGACCTCTTAATCCGTAAAGGATTCATTT
Found at i:14812 original size:51 final size:52
Alignment explanation
Indices: 14667--14851 Score: 239
Period size: 52 Copynumber: 3.6 Consensus size: 52
14657 ATTTCATTTA
*
14667 ATACTCACGATGACACATAGTCATCGGACCTCTTAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * * *
14719 ATACTCACGATGATACACAGTCATAGAACCTCATAATTCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * * *
14771 ATGCTCATGATGA-ACATAGTCATCGGACCTCATAATCCGTAAAGGATCCAC
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
14822 ATACTCACAGA-AACACATAGTCATCAGACC
1 ATACTCAC-GATGACACATAGTCATCGGACC
14852 ATTTTCATTT
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
51 39 0.35
52 74 0.65
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:22177 original size:31 final size:31
Alignment explanation
Indices: 22139--22197 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
22129 TGCCTTCACT
22139 AACTAATGTAAAGGGTATTCGGAGTTTTTCG
1 AACTAATGTAAAGGGTATTCGGAGTTTTTCG
22170 AACTAATGTAAAGGGTATTCGGAGTTTT
1 AACTAATGTAAAGGGTATTCGGAGTTTT
22198 CTCCGGCACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (31 bp):
AACTAATGTAAAGGGTATTCGGAGTTTTTCG
Found at i:44000 original size:20 final size:21
Alignment explanation
Indices: 43975--44014 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
43965 TGCATTTTTA
*
43975 GCATTTT-TAACTTAGTGACT
1 GCATTTTCTAACTCAGTGACT
43995 GCATTTTCTAACTCAGTGAC
1 GCATTTTCTAACTCAGTGAC
44015 ACTCCATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (21 bp):
GCATTTTCTAACTCAGTGACT
Found at i:45571 original size:18 final size:19
Alignment explanation
Indices: 45544--45591 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
45534 TGTTTCCTTA
*
45544 TTTGATAGTTCA-GTTTCC
1 TTTGAAAGTTCATGTTTCC
*
45562 TTTGAAAGTTTATGTTTCC
1 TTTGAAAGTTCATGTTTCC
*
45581 TCTGAACAGTT
1 TTTGAA-AGTT
45592 TGTTAGTCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 10 0.40
19 11 0.44
20 4 0.16
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.48
Consensus pattern (19 bp):
TTTGAAAGTTCATGTTTCC
Found at i:47746 original size:16 final size:17
Alignment explanation
Indices: 47709--47750 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
47699 GAAAAGAAAA
47709 AGAAAGAAAAAAATGTT
1 AGAAAGAAAAAAATGTT
**
47726 A-AAAGAAAAATTTG-T
1 AGAAAGAAAAAAATGTT
47741 AGAAAGAAAA
1 AGAAAGAAAA
47751 TAATATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 19 0.86
17 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (17 bp):
AGAAAGAAAAAAATGTT
Found at i:49256 original size:14 final size:14
Alignment explanation
Indices: 49239--49268 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
49229 TTTAAAGTCT
*
49239 AAAAGATAAATCTA
1 AAAAGATAAATATA
49253 AAAAGATAAATATA
1 AAAAGATAAATATA
49267 AA
1 AA
49269 TTAAATACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (14 bp):
AAAAGATAAATATA
Found at i:49275 original size:11 final size:11
Alignment explanation
Indices: 49259--49291 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
49249 TCTAAAAAGA
49259 TAAATATAAAT
1 TAAATATAAAT
*
49270 TAAATACAAAT
1 TAAATATAAAT
49281 TAAATATAAAT
1 TAAATATAAAT
49292 AATATCCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAATATAAAT
Found at i:52416 original size:18 final size:16
Alignment explanation
Indices: 52373--52416 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
52363 TTTGTTTGTT
52373 TGTTCATGCATTTTTG
1 TGTTCATGCATTTTTG
52389 TGTT--TGCATTTCATTG
1 TGTTCATGCATTT--TTG
52405 TGTTCATGCATT
1 TGTTCATGCATT
52417 AAGGACAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 7 0.29
16 11 0.46
18 6 0.25
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.55
Consensus pattern (16 bp):
TGTTCATGCATTTTTG
Found at i:54828 original size:51 final size:51
Alignment explanation
Indices: 54749--54853 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
54739 CAATAACGAA
*
54749 GCATTGTTGGGGAGCAGAAGCAGCAAAAATTTGCATATGCTAAACGCTCTG
1 GCATTGTTAGGGAGCAGAAGCAGCAAAAATTTGCATATGCTAAACGCTCTG
*
54800 GCATTGTTAGGGAGCAGAAGCAGTAAAAATTTGCATATGCTAAACGCTCTG
1 GCATTGTTAGGGAGCAGAAGCAGCAAAAATTTGCATATGCTAAACGCTCTG
54851 GCA
1 GCA
54854 GTACCAAGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (51 bp):
GCATTGTTAGGGAGCAGAAGCAGCAAAAATTTGCATATGCTAAACGCTCTG
Found at i:61904 original size:69 final size:67
Alignment explanation
Indices: 61827--61965 Score: 188
Period size: 69 Copynumber: 2.0 Consensus size: 67
61817 TGATTAAACT
* * * * *
61827 TAATCATTTTAATATTAAATTAATATAATACTTATCAAGATAAATATTAGATTATATTTAATATT
1 TAATCATTTCAATATTAAATTAATAAAATAC-TATCAAGATAAATATTAAATTAAATTAAAT-TT
61892 AAGA
64 AAGA
* *
61896 TAATCATTTCAATATTAAATTAATAAAATACTATTAAGATAAGTATTAAATTAAATTAAATTTAA
1 TAATCATTTCAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATTAAATTAAATTTAA
*
61961 TA
66 GA
61963 TAA
1 TAA
61966 AATCTATTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 8 0.13
68 25 0.40
69 29 0.47
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (67 bp):
TAATCATTTCAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATTAAATTAAATTTAA
GA
Found at i:61911 original size:20 final size:18
Alignment explanation
Indices: 61869--61963 Score: 58
Period size: 17 Copynumber: 5.3 Consensus size: 18
61859 TATCAAGATA
*
61869 AATATT-AGATTATATTT
1 AATATTAAGATAATATTT
61886 AATATTAAGATAATCATTT
1 AATATTAAGATAAT-ATTT
**
61905 CAATATTAA-ATTAATAAAAT
1 -AATATTAAGA-TAAT-ATTT
*
61925 ACTATTAAGATAAGTA-TT
1 AATATTAAGATAA-TATTT
61943 AA-ATTAA-ATTAA-ATTT
1 AATATTAAGA-TAATATTT
61959 AATAT
1 AATAT
61964 AAAATCTATT
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
15 1 0.02
16 5 0.08
17 16 0.26
18 8 0.13
19 16 0.26
20 16 0.26
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTAAGATAATATTT
Found at i:61984 original size:11 final size:11
Alignment explanation
Indices: 61919--61985 Score: 50
Period size: 11 Copynumber: 6.2 Consensus size: 11
61909 ATTAAATTAA
*
61919 TAAAATACTAT
1 TAAAATAATAT
*
61930 TAAGATAAGTAT
1 TAAAATAA-TAT
*
61942 TAAATTAA-AT
1 TAAAATAATAT
*
61952 TAAATTTAATA-
1 TAAA-ATAATAT
*
61963 TAAAAT-CTAT
1 TAAAATAATAT
61973 TAAAATAATAT
1 TAAAATAATAT
61984 TA
1 TA
61986 TTTTTTGAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
9 2 0.05
10 13 0.30
11 19 0.43
12 10 0.23
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (11 bp):
TAAAATAATAT
Found at i:62289 original size:20 final size:20
Alignment explanation
Indices: 62246--62288 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
62236 ATTCGACAAA
* *
62246 TTTTGGGTCTCAGTCTCTAG
1 TTTTGGGTCTCAGGCTCAAG
*
62266 TTTTGGTTCTCAGGCTCAA-
1 TTTTGGGTCTCAGGCTCAAG
62285 TTTT
1 TTTT
62289 TTATTTCAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.49
Consensus pattern (20 bp):
TTTTGGGTCTCAGGCTCAAG
Found at i:66238 original size:14 final size:14
Alignment explanation
Indices: 66221--66250 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
66211 TTTAAACTCT
*
66221 AAAAGATAAATCTA
1 AAAAGATAAATATA
66235 AAAAGATAAATATA
1 AAAAGATAAATATA
66249 AA
1 AA
66251 TTAAATACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (14 bp):
AAAAGATAAATATA
Found at i:66257 original size:11 final size:11
Alignment explanation
Indices: 66241--66273 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
66231 TCTAAAAAGA
66241 TAAATATAAAT
1 TAAATATAAAT
*
66252 TAAATACAAAT
1 TAAATATAAAT
66263 TAAATATAAAT
1 TAAATATAAAT
66274 AATATCCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAATATAAAT
Found at i:70312 original size:15 final size:16
Alignment explanation
Indices: 70287--70320 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
70277 TAAATATAGT
70287 TTTATTATTTTAATAA
1 TTTATTATTTTAATAA
*
70303 TTTA-TATTTTTATAA
1 TTTATTATTTTAATAA
70318 TTT
1 TTT
70321 TTAAAGAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTATTTTAATAA
Found at i:70351 original size:29 final size:32
Alignment explanation
Indices: 70305--70384 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 32
70295 TTTAATAATT
* *
70305 TATATTTTTATAATTTTTAAAG-AG-TTAAAT
1 TATAATTTTATAATTTTTAAAGAAGATTAAAA
*
70335 TA-AATTTTATTATTTTT-AAGAAGATTAAAA
1 TATAATTTTATAATTTTTAAAGAAGATTAAAA
* *
70365 TATAATTTTATCATTATTAA
1 TATAATTTTATAATTTTTAA
70385 TTTAAAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
28 3 0.07
29 15 0.37
30 9 0.22
31 13 0.32
32 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (32 bp):
TATAATTTTATAATTTTTAAAGAAGATTAAAA
Found at i:70375 original size:31 final size:31
Alignment explanation
Indices: 70305--70384 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
70295 TTTAATAATT
* *
70305 TATATTTTTATAATTTTT-AAAGAGTTAAAT
1 TATAATTTTATAATTTTTAAAAGAGTTAAAA
*
70335 TA-AATTTTATTATTTTTAAGAAGA-TTAAAA
1 TATAATTTTATAATTTTTAA-AAGAGTTAAAA
* *
70365 TATAATTTTATCATTATTAA
1 TATAATTTTATAATTTTTAA
70385 TTTAAAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
29 13 0.31
30 10 0.24
31 19 0.45
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (31 bp):
TATAATTTTATAATTTTTAAAAGAGTTAAAA
Found at i:70415 original size:82 final size:83
Alignment explanation
Indices: 70249--70429 Score: 199
Period size: 82 Copynumber: 2.2 Consensus size: 83
70239 GAAAGTTCGG
* * * * * *
70249 AATTAAATTGTA-TATTTTTACGATAATATAAATATAGTTTTATTATTTTAATAATTTATATTTT
1 AATTAAATTTTATTATTTTTAAGATAATATAAATATAATTTTATCA-TTTAATAATTTAAAATTT
* *
70313 TATAATTTTTAAAGAGTTA
65 TATAATTTATAAAAAGTTA
*
70332 AATTAAATTTTATTATTTTTAAGA-AGAT-TAAAATATAATTTTATCA-TTATTAATTTAAAATT
1 AATTAAATTTTATTATTTTTAAGATA-ATAT-AAATATAATTTTATCATTTAATAATTTAAAATT
*
70394 TTATAATTTATAAAAATTTA
64 TTATAATTTATAAAAAGTTA
*
70414 AATTAAAAATTTATTA
1 AATT-AAATTTTATTA
70430 AGGGACTATA
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
82 34 0.41
83 23 0.28
84 26 0.31
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (83 bp):
AATTAAATTTTATTATTTTTAAGATAATATAAATATAATTTTATCATTTAATAATTTAAAATTTT
ATAATTTATAAAAAGTTA
Found at i:70943 original size:6 final size:6
Alignment explanation
Indices: 70932--70970 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
70922 AAAACTCAAC
* *
70932 TCTCTT TCTCTT TCTCTT TCTCTT TCTCCT TCTCCT TCT
1 TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TCT
70971 TCTCCTTGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (6 bp):
TCTCTT
Found at i:70988 original size:2 final size:2
Alignment explanation
Indices: 70981--71011 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
70971 TCTCCTTGTC
*
70981 CT CT CT CT CT CT CT CT CT CT CT CT CT GT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
71012 GTGTTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.03, T:0.48
Consensus pattern (2 bp):
CT
Found at i:70989 original size:15 final size:15
Alignment explanation
Indices: 70951--71005 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
70941 CTTTCTCTTT
*
70951 CTCTTTCTCCTTCTC
1 CTCTCTCTCCTTCTC
*
70966 CT-TCTTCTCCTTGTC
1 CTCTC-TCTCCTTCTC
70981 CTCTCTCT-CTCTCTC
1 CTCTCTCTCCT-TCTC
70996 TCTCTCTCTC
1 -CTCTCTCTC
71006 TGTCTCGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 3 0.09
15 19 0.59
16 10 0.31
ACGTcount: A:0.00, C:0.47, G:0.02, T:0.51
Consensus pattern (15 bp):
CTCTCTCTCCTTCTC
Found at i:73260 original size:16 final size:15
Alignment explanation
Indices: 73239--73288 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
73229 AGTTCATAAC
73239 AATTCGAGTTTAAAA
1 AATTCGAGTTTAAAA
73254 AAGTTCGAGTTTATAATA
1 AA-TTCGAGTTTA-AA-A
* *
73272 AATTTGAATTTAAAA
1 AATTCGAGTTTAAAA
73287 AA
1 AA
73289 ATTTAAATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 5 0.17
16 12 0.40
17 10 0.33
18 3 0.10
ACGTcount: A:0.48, C:0.04, G:0.12, T:0.36
Consensus pattern (15 bp):
AATTCGAGTTTAAAA
Found at i:73292 original size:16 final size:16
Alignment explanation
Indices: 73247--73310 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
73237 ACAATTCGAG
* * *
73247 TTTAAAAAAGTTCGAG
1 TTTAAAAAAATTTGAA
*
73263 TTTATAATAAATTTGAA
1 TTTA-AAAAAATTTGAA
*
73280 TTTAAAAAAATTTAAA
1 TTTAAAAAAATTTGAA
*
73296 TCTAAAAAAATTTGA
1 TTTAAAAAAATTTGA
73311 GAGAATTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
16 27 0.69
17 12 0.31
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.38
Consensus pattern (16 bp):
TTTAAAAAAATTTGAA
Found at i:73717 original size:13 final size:13
Alignment explanation
Indices: 73699--73725 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73689 GAATGGCTCG
73699 AAAAAAATTTAAA
1 AAAAAAATTTAAA
73712 AAAAAAATTTAAA
1 AAAAAAATTTAAA
73725 A
1 A
73726 GTTCAGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAAAAATTTAAA
Found at i:76025 original size:23 final size:24
Alignment explanation
Indices: 75995--76039 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
75985 TCTCATTCCA
75995 TCTCACC-TCCTTATT-TCTCCATC
1 TCTCACCTTCCTT-TTCTCTCCATC
76018 TCTCACCTTCCTTTTCTCTCCA
1 TCTCACCTTCCTTTTCTCTCCA
76040 ATCAGGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.11, C:0.44, G:0.00, T:0.44
Consensus pattern (24 bp):
TCTCACCTTCCTTTTCTCTCCATC
Found at i:80191 original size:84 final size:85
Alignment explanation
Indices: 80004--80192 Score: 249
Period size: 84 Copynumber: 2.2 Consensus size: 85
79994 TTGATTAGTA
* *
80004 TTAAAGGAAGACTCATGTCTCAAGATGAGCATGAGGGGTATATTAAAGGAAGACTAGTGACTCGA
1 TTAAAGGAAGACTCATGACTCAAGAAGAGCATGAGGGGTATATTAAAGGAAGACTAGTGACTCGA
* *
80069 GAAGAGCATGAGATTTTGAT
66 GAAAAGCATGAGATTTCGAT
* * * * * *
80089 TT-AAGGAAGACTCGTGACTTAAGAAGAGTATGA-GGTTATGTTTAAAGGAAGACTCGTGACTCG
1 TTAAAGGAAGACTCATGACTCAAGAAGAGCATGAGGGGTAT-ATTAAAGGAAGACTAGTGACTCG
80152 AGAAAAGCATGAGATTTCG-T
65 AGAAAAGCATGAGATTTCGAT
*
80172 TTAAAGGAAGACTTATGACTC
1 TTAAAGGAAGACTCATGACTC
80193 GATTGATCAT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
83 8 0.09
84 79 0.89
85 2 0.02
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (85 bp):
TTAAAGGAAGACTCATGACTCAAGAAGAGCATGAGGGGTATATTAAAGGAAGACTAGTGACTCGA
GAAAAGCATGAGATTTCGAT
Found at i:80193 original size:42 final size:41
Alignment explanation
Indices: 80004--80194 Score: 179
Period size: 42 Copynumber: 4.6 Consensus size: 41
79994 TTGATTAGTA
* * * *** *
80004 TTAAAGGAAGACTCATGTCTCAAGATGAGCATGAGGGGTAT
1 TTAAAGGAAGACTCATGACTCGAGAAGAGCATGAGATTTGT
80045 ATTAAAGGAAGACT-AGTGACTCGAGAAGAGCATGAGATTTTGAT
1 -TTAAAGGAAGACTCA-TGACTCGAGAAGAGCATGAGA-TTTG-T
* ** * *
80089 TT-AAGGAAGACTCGTGACTTAAGAAGAGTATGAGGTTATGT
1 TTAAAGGAAGACTCATGACTCGAGAAGAGCATGAGATT-TGT
* *
80130 TTAAAGGAAGACTCGTGACTCGAGAAAAGCATGAGATTTCGT
1 TTAAAGGAAGACTCATGACTCGAGAAGAGCATGAGATTT-GT
*
80172 TTAAAGGAAGACTTATGACTCGA
1 TTAAAGGAAGACTCATGACTCGA
80195 TTGATCATGT
Statistics
Matches: 123, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
41 7 0.06
42 112 0.91
43 3 0.02
44 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (41 bp):
TTAAAGGAAGACTCATGACTCGAGAAGAGCATGAGATTTGT
Found at i:85579 original size:14 final size:15
Alignment explanation
Indices: 85544--85581 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
85534 ATAATTTTTA
85544 TATTGAATTTTGAAT
1 TATTGAATTTTGAAT
85559 TGA-TGAATTTT-AAT
1 T-ATTGAATTTTGAAT
85573 TATTGAATT
1 TATTGAATT
85582 AAAAGTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 1 0.05
14 10 0.48
15 9 0.43
16 1 0.05
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
TATTGAATTTTGAAT
Found at i:87094 original size:41 final size:41
Alignment explanation
Indices: 87049--87128 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
87039 GCCTAATATG
87049 CTTTACGATGGTGTACTGTATCAGGCCTTGAGCCTAGCAGA
1 CTTTACGATGGTGTACTGTATCAGGCCTTGAGCCTAGCAGA
* * * * * *
87090 CTTTATGCTGGTGTATTGTTTCGGGCCTTGTGCCTAGCA
1 CTTTACGATGGTGTACTGTATCAGGCCTTGAGCCTAGCA
87129 AGCTTCGTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.16, C:0.21, G:0.28, T:0.35
Consensus pattern (41 bp):
CTTTACGATGGTGTACTGTATCAGGCCTTGAGCCTAGCAGA
Found at i:87198 original size:40 final size:40
Alignment explanation
Indices: 87122--87224 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 40
87112 GGGCCTTGTG
* * * *
87122 CCTAGCAAGCTTCGTG-TCGGTGTATTTATCAAGCTTAGTA
1 CCTAGCAAGCTTCATGCT-AGTGTGTTGATCAAGCTTAGTA
* ** * *
87162 CTTAGCAAGCTTTGTGCTAGTGTGTTGATCAGGCTTAGTG
1 CCTAGCAAGCTTCATGCTAGTGTGTTGATCAAGCTTAGTA
*
87202 CCTAGCAGGCTTCATGCTAGTGT
1 CCTAGCAAGCTTCATGCTAGTGT
87225 AAAAATTCGT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 50 0.98
41 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (40 bp):
CCTAGCAAGCTTCATGCTAGTGTGTTGATCAAGCTTAGTA
Found at i:91381 original size:26 final size:26
Alignment explanation
Indices: 91352--91410 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
91342 AGTTTTCTTT
91352 TCTCTTCGTGGTGAAAATGAAAATTC
1 TCTCTTCGTGGTGAAAATGAAAATTC
91378 TCTCTTCGTGGTGAAAATGAAAATTC
1 TCTCTTCGTGGTGAAAATGAAAATTC
91404 TCTCTTC
1 TCTCTTC
91411 TTTAATAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (26 bp):
TCTCTTCGTGGTGAAAATGAAAATTC
Found at i:98064 original size:17 final size:18
Alignment explanation
Indices: 98037--98070 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
98027 ACGTAATTTT
*
98037 TAGATAATTATAGAAATA
1 TAGATAATTATAAAAATA
98055 TAGA-AATTATAAAAAT
1 TAGATAATTATAAAAAT
98071 TATTTGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (18 bp):
TAGATAATTATAAAAATA
Found at i:99406 original size:18 final size:19
Alignment explanation
Indices: 99356--99408 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
99346 TTTTAGGAAA
99356 AATCGAATTAATTT-GGTT
1 AATCGAATTAATTTCGGTT
*
99374 AATTG-ATTGAA-TTCGGTT
1 AATCGAATT-AATTTCGGTT
99392 AATCGAATT-ATTTCGGT
1 AATCGAATTAATTTCGGT
99409 CGAGGGTCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
17 6 0.21
18 20 0.69
19 3 0.10
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (19 bp):
AATCGAATTAATTTCGGTT
Found at i:100972 original size:16 final size:17
Alignment explanation
Indices: 100951--100989 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
100941 ATTATTAGTT
*
100951 TAATTATATTTT-ATTA
1 TAATTATATTTTGATAA
100967 TAATTA-ATTTTGATAA
1 TAATTATATTTTGATAA
100983 TAATTAT
1 TAATTAT
100990 TTGAGTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TAATTATATTTTGATAA
Found at i:104097 original size:97 final size:97
Alignment explanation
Indices: 103931--104124 Score: 298
Period size: 97 Copynumber: 2.0 Consensus size: 97
103921 AACCTTGAAA
* *
103931 AAGGGTATTCGATTATCCCGGTTTGAAGAAAAATCGTGCATAGTAAGTTAAAGCACCAATTTTCA
1 AAGGGTATTCGATTATCCCGGTTTGAAGAAAAATCGCGCATAGTAAGTTAAAGCACAAATTTTCA
* * *
103996 AAACCCGAGATAAAGGAATATTGCCTCAATTT
66 AAACCCAAAATAAAAGAATATTGCCTCAATTT
* * *
104028 AAGGGTATTCGATTATCCTGGTTTGAAGAAAAATCGCGCCTAGTAAGTTAAGGCACAAATTTTCA
1 AAGGGTATTCGATTATCCCGGTTTGAAGAAAAATCGCGCATAGTAAGTTAAAGCACAAATTTTCA
* *
104093 AAACCCAAAATAAAATAATATTGCCTCGATTT
66 AAACCCAAAATAAAAGAATATTGCCTCAATTT
104125 TAAATATTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (97 bp):
AAGGGTATTCGATTATCCCGGTTTGAAGAAAAATCGCGCATAGTAAGTTAAAGCACAAATTTTCA
AAACCCAAAATAAAAGAATATTGCCTCAATTT
Found at i:104273 original size:14 final size:15
Alignment explanation
Indices: 104254--104291 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
104244 GCACGAATGG
104254 ATAAATATACG-AAA
1 ATAAATATACGAAAA
*
104268 ATAAATATAAGAAAA
1 ATAAATATACGAAAA
104283 ATAAA-ATAC
1 ATAAATATAC
104292 AAATTATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (15 bp):
ATAAATATACGAAAA
Found at i:104573 original size:59 final size:59
Alignment explanation
Indices: 104420--104763 Score: 303
Period size: 59 Copynumber: 5.9 Consensus size: 59
104410 GTTCGAGGTT
* * * * * * * *
104420 AAAATATAA-TTTTG-GAAATTTTAGGAGTAAAAATGTCA-TGTTGGGAGAGTTCGGGGTA
1 AAAATGTAATTTTTGAGAAGTTTGAGG-GTAAAAATGTGATTTTTGAGA-AGTTAGGGGCA
* * * * ** *
104478 AAATTGTGATTTTTGAGAAGTTCGA-GGCAAAAATGTGATTTTTGAGAAGTCCGAGGCA
1 AAAATGTAATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAGTTAGGGGCA
* * * * *
104536 AAAATATAATTTTTGAGAAGTTTGAAGTTAAAAATGTGATATTTG-GAAGTTTAGGGGAA
1 AAAATGTAATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAG-TTAGGGGCA
* *
104595 AAAATGTATTTTTTGAGAAGTTTGAGGGTAAAAATGCT-ATTTTTG-GAAGTTTGGGAGC-
1 AAAATGTAATTTTTGAGAAGTTTGAGGGTAAAAATG-TGATTTTTGAGAAGTTAGGG-GCA
* *
104653 AAAATGTGATTTTTGAGAAGTTT-AGGGGTAAAAATGTGATTTTTGAGAAGTTTAGGGGTA
1 AAAATGTAATTTTTGAGAAGTTTGA-GGGTAAAAATGTGATTTTTGAGAAG-TTAGGGGCA
* * * *
104713 AAAATGTGATTTTTG-GAAGTTTGAGGGAAAAAATATAATTTTTGAGAAGTT
1 AAAATGTAATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAGTT
104764 TGAGGGTCCA
Statistics
Matches: 235, Mismatches: 38, Indels: 26
0.79 0.13 0.09
Matches are distributed among these distances:
57 2 0.01
58 95 0.40
59 110 0.47
60 28 0.12
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (59 bp):
AAAATGTAATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAGTTAGGGGCA
Found at i:104599 original size:88 final size:88
Alignment explanation
Indices: 104477--104735 Score: 255
Period size: 88 Copynumber: 3.0 Consensus size: 88
104467 AGTTCGGGGT
* * * * *
104477 AAAATTGTGATTTTTGAGAAG-TTCGAGGCAAAAATGTGATTTTTGAGAAGTCCGA-GGCAAAAA
1 AAAAATGTGATATTTGAGAAGTTTAGGGGAAAAAATGTGATTTTTGAGAAGTCCGAGGGCAAAAA
104540 T-ATAATTTTTGAGAAGTTT-GAAG
66 TGAT-ATTTTTG-GAAGTTTGGAAG
** *
104563 TTAAAAATGTGATATTTG-GAAGTTTAGGGGAAAAAATGT-ATTTTTTGAGAAGTTTGAGGGTAA
1 --AAAAATGTGATATTTGAGAAGTTTAGGGGAAAAAATGTGA-TTTTTGAGAAGTCCGAGGGCAA
* *
104626 AAATGCTATTTTTGGAAGTTTGGGAG
63 AAATGATATTTTTGGAAGTTTGGAAG
* * * ** *
104652 CAAAATGTGATTTTTGAGAAGTTTAGGGGTAAAAATGTGATTTTTGAGAAGT-TTAGGGGTAAAA
1 AAAAATGTGATATTTGAGAAGTTTAGGGGAAAAAATGTGATTTTTGAGAAGTCCGA-GGGCAAAA
104716 ATG-TGATTTTTGGAAGTTTG
65 ATGAT-ATTTTTGGAAGTTTG
104736 AGGGAAAAAA
Statistics
Matches: 148, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
87 22 0.15
88 106 0.72
89 19 0.13
90 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (88 bp):
AAAAATGTGATATTTGAGAAGTTTAGGGGAAAAAATGTGATTTTTGAGAAGTCCGAGGGCAAAAA
TGATATTTTTGGAAGTTTGGAAG
Found at i:104764 original size:59 final size:60
Alignment explanation
Indices: 104472--104769 Score: 328
Period size: 59 Copynumber: 5.0 Consensus size: 60
104462 GGGAGAGTTC
* * * **
104472 GGGGTAAAATTGTGATTTTTGAGAAGTTCGA-GGCAAAAATGTGATTTTTGAGAAG-TCC
1 GGGGTAAAAATGTGATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAGTTTA
* * * * * * *
104530 GAGGCAAAAATATAATTTTTGAGAAGTTTGAAGTTAAAAATGTGATATTTG-GAAGTTTA
1 GGGGTAAAAATGTGATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAGTTTA
*
104589 GGGGAAAAAATGT-ATTTTTTGAGAAGTTTGAGGGTAAAAATGCT-ATTTTTG-GAAGTTT-
1 GGGGTAAAAATGTGA-TTTTTGAGAAGTTTGAGGGTAAAAATG-TGATTTTTGAGAAGTTTA
*
104647 GGGAG-CAAAATGTGATTTTTGAGAAGTTT-AGGGGTAAAAATGTGATTTTTGAGAAGTTTA
1 GGG-GTAAAAATGTGATTTTTGAGAAGTTTGA-GGGTAAAAATGTGATTTTTGAGAAGTTTA
* * *
104707 GGGGTAAAAATGTGATTTTTG-GAAGTTTGAGGGAAAAAATATAATTTTTGAGAAGTTTGA
1 GGGGTAAAAATGTGATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAGTTT-A
104767 GGG
1 GGG
104770 TCCAAATATG
Statistics
Matches: 205, Mismatches: 22, Indels: 24
0.82 0.09 0.10
Matches are distributed among these distances:
57 2 0.01
58 72 0.35
59 107 0.52
60 24 0.12
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (60 bp):
GGGGTAAAAATGTGATTTTTGAGAAGTTTGAGGGTAAAAATGTGATTTTTGAGAAGTTTA
Found at i:104778 original size:30 final size:30
Alignment explanation
Indices: 104473--104770 Score: 314
Period size: 29 Copynumber: 10.1 Consensus size: 30
104463 GGAGAGTTCG
* *
104473 GGGTAAAATTGTGATTTTTGAGAAGTTCGA
1 GGGTAAAAATGTGATTTTTGAGAAGTTTGA
* **
104503 -GGCAAAAATGTGATTTTTGAGAAGTCCGA
1 GGGTAAAAATGTGATTTTTGAGAAGTTTGA
* * *
104532 -GGCAAAAATATAATTTTTGAGAAGTTTGA
1 GGGTAAAAATGTGATTTTTGAGAAGTTTGA
* * *
104561 AGTTAAAAATGTGATATTTG-GAAGTTT-A
1 GGGTAAAAATGTGATTTTTGAGAAGTTTGA
*
104589 GGGGAAAAAATGT-ATTTTTTGAGAAGTTTGA
1 -GGGTAAAAATGTGA-TTTTTGAGAAGTTTGA
104620 GGGTAAAAATGCT-ATTTTTG-GAAGTTTG-
1 GGGTAAAAATG-TGATTTTTGAGAAGTTTGA
*
104648 GGAG-CAAAATGTGATTTTTGAGAAGTTT-A
1 GG-GTAAAAATGTGATTTTTGAGAAGTTTGA
104677 GGGGTAAAAATGTGATTTTTGAGAAGTTT-A
1 -GGGTAAAAATGTGATTTTTGAGAAGTTTGA
104707 GGGGTAAAAATGTGATTTTTG-GAAGTTTGA
1 -GGGTAAAAATGTGATTTTTGAGAAGTTTGA
* * *
104737 GGGAAAAAATATAATTTTTGAGAAGTTTGA
1 GGGTAAAAATGTGATTTTTGAGAAGTTTGA
104767 GGGT
1 GGGT
104771 CCAAATATGA
Statistics
Matches: 231, Mismatches: 23, Indels: 28
0.82 0.08 0.10
Matches are distributed among these distances:
27 1 0.00
28 17 0.07
29 113 0.49
30 97 0.42
31 3 0.01
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (30 bp):
GGGTAAAAATGTGATTTTTGAGAAGTTTGA
Found at i:106641 original size:18 final size:17
Alignment explanation
Indices: 106609--106701 Score: 132
Period size: 17 Copynumber: 5.4 Consensus size: 17
106599 ACTTTGATAT
*
106609 TTTAAATTTAAAATAAG
1 TTTAAATTTAAAATAAA
106626 TTTAAATTTAAAAATAAA
1 TTTAAATTT-AAAATAAA
* * *
106644 TTTAAACTTAAGATGAA
1 TTTAAATTTAAAATAAA
106661 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
106678 TTTAAACTTTAAAATAAA
1 TTTAAA-TTTAAAATAAA
106696 TTTAAA
1 TTTAAA
106702 AATGGGTTCA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
17 35 0.52
18 32 0.48
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:106688 original size:7 final size:6
Alignment explanation
Indices: 106609--106701 Score: 61
Period size: 6 Copynumber: 16.0 Consensus size: 6
106599 ACTTTGATAT
* * ** *
106609 TTTAAA TTTAAA -ATAAG TTTAAA TTTAAA AATAAA TTTAAA CTTAAGA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAA-A
* * *
106657 --TGAA TTTAAA TTTAAA -ATAAA TTTAAA CTTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA -TTTAAA TTTAAA TTTAAA
106702 AATGGGTTCA
Statistics
Matches: 65, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
4 1 0.02
5 13 0.20
6 44 0.68
7 7 0.11
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (6 bp):
TTTAAA
Found at i:108522 original size:16 final size:17
Alignment explanation
Indices: 108494--108529 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
108484 TAAATTAATG
108494 TAAAAAATAAATAAAAT
1 TAAAAAATAAATAAAAT
*
108511 TAAAAAAT-AATAATAT
1 TAAAAAATAAATAAAAT
108527 TAA
1 TAA
108530 CACAATGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAAAAATAAATAAAAT
Found at i:109996 original size:20 final size:20
Alignment explanation
Indices: 109971--110009 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
109961 ATATATTATC
109971 ACTGTTCACGACATGACCCG
1 ACTGTTCACGACATGACCCG
* *
109991 ACTGTTCATGACTTGACCC
1 ACTGTTCACGACATGACCC
110010 CACTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (20 bp):
ACTGTTCACGACATGACCCG
Found at i:110200 original size:26 final size:26
Alignment explanation
Indices: 110155--110209 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
110145 CTTTGGTTCA
* *
110155 TGCGAGCTAGATCCGTGAGCTCCTCT
1 TGCGAGCTAGATCCGCGAGCTCCCCT
* *
110181 TGCGAGCTAGGTCTGCGAGCTCCCCT
1 TGCGAGCTAGATCCGCGAGCTCCCCT
110207 TGC
1 TGC
110210 TATCTTCTCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.33, G:0.29, T:0.25
Consensus pattern (26 bp):
TGCGAGCTAGATCCGCGAGCTCCCCT
Found at i:112181 original size:7 final size:7
Alignment explanation
Indices: 112167--112200 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
112157 GAACTCGACT
112167 CGTTGAC
1 CGTTGAC
*
112174 CATTGAC
1 CGTTGAC
112181 CGTTGAC
1 CGTTGAC
112188 CGTTGAC
1 CGTTGAC
112195 CGTTGA
1 CGTTGA
112201 TTGTTGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.29
Consensus pattern (7 bp):
CGTTGAC
Found at i:119131 original size:7 final size:7
Alignment explanation
Indices: 119119--119180 Score: 56
Period size: 7 Copynumber: 9.1 Consensus size: 7
119109 TCGAACCGAC
119119 CCGTTGA
1 CCGTTGA
119126 CCGTTGA
1 CCGTTGA
*
119133 CCATTGA
1 CCGTTGA
*
119140 CCATTGA
1 CCGTTGA
*
119147 CCATTGA
1 CCGTTGA
*
119154 TCGTTGA
1 CCGTTGA
*
119161 -CTTTGA
1 CCGTTGA
*
119167 -TGTTGA
1 CCGTTGA
119173 CCGTTGA
1 CCGTTGA
119180 C
1 C
119181 TTTTTTCAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
6 9 0.19
7 38 0.81
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (7 bp):
CCGTTGA
Found at i:119141 original size:14 final size:14
Alignment explanation
Indices: 119122--119161 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
119112 AACCGACCCG
119122 TTGACCGTTGACCA
1 TTGACCGTTGACCA
*
119136 TTGACCATTGACCA
1 TTGACCGTTGACCA
*
119150 TTGATCGTTGAC
1 TTGACCGTTGAC
119162 TTTGATGTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.33
Consensus pattern (14 bp):
TTGACCGTTGACCA
Found at i:126196 original size:50 final size:50
Alignment explanation
Indices: 126121--126233 Score: 199
Period size: 50 Copynumber: 2.3 Consensus size: 50
126111 AAAAAAAGAA
* *
126121 TATATACAAGTATAATTCATTGATAAAAGAATAAGCGGTACTATGAAAAT
1 TATATACAAATATAATTCATTGATAAAAGAATAAGCGATACTATGAAAAT
*
126171 TATACACAAATATAATTCATTGATAAAAGAATAAGCGATACTATGAAAAT
1 TATATACAAATATAATTCATTGATAAAAGAATAAGCGATACTATGAAAAT
126221 TATATACAAATAT
1 TATATACAAATAT
126234 TGTAACACCC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (50 bp):
TATATACAAATATAATTCATTGATAAAAGAATAAGCGATACTATGAAAAT
Found at i:127433 original size:24 final size:25
Alignment explanation
Indices: 127397--127578 Score: 201
Period size: 24 Copynumber: 7.3 Consensus size: 25
127387 GCAAGTTCAT
* *
127397 TACATTTATGCTCGTTAGCTT-ATA
1 TACATTTACGCTCGTCAGCTTGATA
*
127421 TACATTTACGCTCGTCAGCTTAAATA
1 TACATTTACGCTCGTCAGCTT-GATA
* *
127447 TATATTTACGCTCGTTAGCTTGCATA
1 TACATTTACGCTCGTCAGCTTG-ATA
* * *
127473 AACGTTTACGCTGGTCAGCTTGA-A
1 TACATTTACGCTCGTCAGCTTGATA
*
127497 TACATTTATGCTCGTCAGCTTGA-A
1 TACATTTACGCTCGTCAGCTTGATA
* *
127521 TACGTTTACGCTCATCAGCTTGATTA
1 TACATTTACGCTCGTCAGCTTGA-TA
*
127547 TACGTTTACGCTCGTCAGCTTGA-A
1 TACATTTACGCTCGTCAGCTTGATA
127571 TACATTTA
1 TACATTTA
127579 ATACTTTTAT
Statistics
Matches: 134, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
24 68 0.51
25 1 0.01
26 65 0.49
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (25 bp):
TACATTTACGCTCGTCAGCTTGATA
Found at i:127558 original size:74 final size:76
Alignment explanation
Indices: 127401--127578 Score: 220
Period size: 74 Copynumber: 2.4 Consensus size: 76
127391 GTTCATTACA
* * * * *
127401 TTTATGCTCGTTAGCTT-ATATACATTTACGCTCGTCAGCTTAAATATATATTTACGCTCGTTAG
1 TTTACGCTCGTCAGCTTGA-ATACATTTACGCTCGTCAGCTTAAATATACATTTACGCTCATCAG
127465 CTTGCATAAACG
65 CTTGCATAAACG
* * * *
127477 TTTACGCTGGTCAGCTTGAATACATTTATGCTCGTCAGCTT-GA-ATACGTTTACGCTCATCAGC
1 TTTACGCTCGTCAGCTTGAATACATTTACGCTCGTCAGCTTAAATATACATTTACGCTCATCAGC
*
127540 TTG-ATTATACG
66 TTGCA-TAAACG
127551 TTTACGCTCGTCAGCTTGAATACATTTA
1 TTTACGCTCGTCAGCTTGAATACATTTA
127579 ATACTTTTAT
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
73 1 0.01
74 51 0.57
75 1 0.01
76 35 0.39
77 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (76 bp):
TTTACGCTCGTCAGCTTGAATACATTTACGCTCGTCAGCTTAAATATACATTTACGCTCATCAGC
TTGCATAAACG
Found at i:128374 original size:12 final size:12
Alignment explanation
Indices: 128339--128366 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
128329 GAGAAGAAAA
128339 TTTGAACAATTT
1 TTTGAACAATTT
128351 TTTGAACAATTT
1 TTTGAACAATTT
128363 TTTG
1 TTTG
128367 TTCAATTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (12 bp):
TTTGAACAATTT
Found at i:134746 original size:26 final size:26
Alignment explanation
Indices: 134632--134866 Score: 208
Period size: 26 Copynumber: 9.2 Consensus size: 26
134622 GTTCATTACT
*
134632 TTTACGCTCATCATCTT--ATATACG
1 TTTACGCTCATCAGCTTGAATATACG
* * * *
134656 TTTACACTCGTTAGTTTG--TATACG
1 TTTACGCTCATCAGCTTGAATATACG
* * * * * *
134680 TTTATGCTTATCAACGTGCATATACA
1 TTTACGCTCATCAGCTTGAATATACG
** * *
134706 TTTATACTCGTCAGCTTGAATACACG
1 TTTACGCTCATCAGCTTGAATATACG
* *
134732 TTAACGCTCATCAGCTTGAATATATG
1 TTTACGCTCATCAGCTTGAATATACG
* * *
134758 TTTACGCTCGTCAGCTTGCATATACA
1 TTTACGCTCATCAGCTTGAATATACG
*
134784 TTTATGCTCATCAGCTTGAATATACG
1 TTTACGCTCATCAGCTTGAATATACG
* *
134810 TTTATGCTCGTCAGCTTGAATATACG
1 TTTACGCTCATCAGCTTGAATATACG
* * *
134836 TTTACGCTTATCAGCTTGATTATACA
1 TTTACGCTCATCAGCTTGAATATACG
134862 TTTAC
1 TTTAC
134867 ACTTGTTAGC
Statistics
Matches: 165, Mismatches: 43, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
24 28 0.17
26 137 0.83
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (26 bp):
TTTACGCTCATCAGCTTGAATATACG
Found at i:134755 original size:52 final size:52
Alignment explanation
Indices: 134632--134884 Score: 235
Period size: 52 Copynumber: 4.9 Consensus size: 52
134622 GTTCATTACT
* * * * *
134632 TTTACGCTCATCATCTT--ATATACGTTTACACTCGTTAGTTTG--TATACG
1 TTTACGCTCATCAGCTTGAATATACATTTACACTCGTCAGCTTGAATACACG
* * * * * *
134680 TTTATGCTTATCAACGTGCATATACATTTATACTCGTCAGCTTGAATACACG
1 TTTACGCTCATCAGCTTGAATATACATTTACACTCGTCAGCTTGAATACACG
* ** * * * *
134732 TTAACGCTCATCAGCTTGAATATATGTTTACGCTCGTCAGCTTGCATATACA
1 TTTACGCTCATCAGCTTGAATATACATTTACACTCGTCAGCTTGAATACACG
* * ** *
134784 TTTATGCTCATCAGCTTGAATATACGTTTATGCTCGTCAGCTTGAATATACG
1 TTTACGCTCATCAGCTTGAATATACATTTACACTCGTCAGCTTGAATACACG
* * * *
134836 TTTACGCTTATCAGCTTGATTATACATTTACACTTGTTAGCTTGAATAC
1 TTTACGCTCATCAGCTTGAATATACATTTACACTCGTCAGCTTGAATAC
134885 GTTTAATACT
Statistics
Matches: 164, Mismatches: 37, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
48 13 0.08
50 21 0.13
52 130 0.79
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (52 bp):
TTTACGCTCATCAGCTTGAATATACATTTACACTCGTCAGCTTGAATACACG
Found at i:134811 original size:78 final size:78
Alignment explanation
Indices: 134674--134884 Score: 253
Period size: 78 Copynumber: 2.7 Consensus size: 78
134664 CGTTAGTTTG
* * * * *
134674 TATACGTTTATGCTTATCAACGTGCATATACATTTATACTCGTCAGCTTGAATACACGTTAACGC
1 TATACGTTTACGCTCATCAGCTTGCATATACATTTATACTCATCAGCTTGAATACACGTTAACGC
134739 TCATCAGCTTGAA
66 TCATCAGCTTGAA
* * * * * *
134752 TATATGTTTACGCTCGTCAGCTTGCATATACATTTATGCTCATCAGCTTGAATATACGTTTATGC
1 TATACGTTTACGCTCATCAGCTTGCATATACATTTATACTCATCAGCTTGAATACACGTTAACGC
*
134817 TCGTCAGCTTGAA
66 TCATCAGCTTGAA
* * ** *
134830 TATACGTTTACGCTTATCAGCTTG-ATTATACATTTACACTTGTTAGCTTGAATAC
1 TATACGTTTACGCTCATCAGCTTGCA-TATACATTTATACTCATCAGCTTGAATAC
134885 GTTTAATACT
Statistics
Matches: 111, Mismatches: 21, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
77 1 0.01
78 110 0.99
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (78 bp):
TATACGTTTACGCTCATCAGCTTGCATATACATTTATACTCATCAGCTTGAATACACGTTAACGC
TCATCAGCTTGAA
Found at i:136449 original size:36 final size:36
Alignment explanation
Indices: 136409--136483 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
136399 AGAAAAACAA
136409 ATAATTTCATTTACATGGCATTCTAAGAAGATATAG
1 ATAATTTCATTTACATGGCATTCTAAGAAGATATAG
136445 ATAATTTCATTTACATGGCATTCTAAGAAGATATAG
1 ATAATTTCATTTACATGGCATTCTAAGAAGATATAG
136481 ATA
1 ATA
136484 TAACATGATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (36 bp):
ATAATTTCATTTACATGGCATTCTAAGAAGATATAG
Found at i:145703 original size:14 final size:15
Alignment explanation
Indices: 145684--145716 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
145674 ATGCATTTCT
145684 TTATTT-ACTTTCAG
1 TTATTTCACTTTCAG
*
145698 TTATTTCACTTTTAG
1 TTATTTCACTTTCAG
145713 TTAT
1 TTAT
145717 GTTGTTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (15 bp):
TTATTTCACTTTCAG
Found at i:148009 original size:17 final size:18
Alignment explanation
Indices: 147989--148028 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
147979 TTAGATTTAA
147989 TGCATTTT-TATTATCAT
1 TGCATTTTATATTATCAT
* *
148006 TGCATTTTATTTTGTCAT
1 TGCATTTTATATTATCAT
148024 TGCAT
1 TGCAT
148029 CATTTTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.57
Consensus pattern (18 bp):
TGCATTTTATATTATCAT
Found at i:148639 original size:18 final size:18
Alignment explanation
Indices: 148613--148658 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
148603 TTAGTCACTT
*
148613 GAAAAAAAATGAGAAAA-A
1 GAAAGAAAA-GAGAAAAGA
148631 GAAAGAAAAGAGAAAAGA
1 GAAAGAAAAGAGAAAAGA
148649 GAAAAGAAAA
1 G-AAAGAAAA
148659 AAATTATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 7 0.28
18 10 0.40
19 8 0.32
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (18 bp):
GAAAGAAAAGAGAAAAGA
Found at i:150875 original size:23 final size:23
Alignment explanation
Indices: 150845--150893 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
150835 AGACCGATGC
150845 CATAACATTGCTGACAGCCCAGG
1 CATAACATTGCTGACAGCCCAGG
150868 CATAACATTGCTGACAGCCCAGG
1 CATAACATTGCTGACAGCCCAGG
150891 CAT
1 CAT
150894 CATCTCTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (23 bp):
CATAACATTGCTGACAGCCCAGG
Found at i:152699 original size:15 final size:16
Alignment explanation
Indices: 152681--152713 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
152671 TTTCATTAAT
152681 TTCATTTTAT-TTTAC
1 TTCATTTTATATTTAC
152696 TTCATTTTATATTTAC
1 TTCATTTTATATTTAC
152712 TT
1 TT
152714 TACTTTGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (16 bp):
TTCATTTTATATTTAC
Found at i:160315 original size:5 final size:5
Alignment explanation
Indices: 160267--160314 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
160257 ACCCAGTCGC
*
160267 AAACA AAACA AAACA AAACA AAACA AAACA AAACA AAACA AAATA AAA
1 AAACA AAACA AAACA AAACA AAACA AAACA AAACA AAACA AAACA AAA
160315 TTTAAAAAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.02
Consensus pattern (5 bp):
AAACA
Found at i:161835 original size:14 final size:13
Alignment explanation
Indices: 161806--161847 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
161796 TCGATTTGCA
*
161806 TTTATTTAT-TTA
1 TTTATTTATATTG
161818 TTTATTTTATATTG
1 TTTA-TTTATATTG
161832 TTTATTTATTATTG
1 TTTATTTA-TATTG
161846 TT
1 TT
161848 GCCTATCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 4 0.15
13 9 0.35
14 13 0.50
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTATTTATATTG
Found at i:168033 original size:12 final size:13
Alignment explanation
Indices: 167991--168040 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
167981 TTGCAATTTG
*
167991 ATTTTCATTTCATT
1 ATTTTTATTT-ATT
*
168005 ATATTTATTTATCT
1 ATTTTTATTTAT-T
168019 ATTTTTA-TTATT
1 ATTTTTATTTATT
168031 A-TTTTATTTA
1 ATTTTTATTTA
168041 CTAACAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.16
12 5 0.16
13 6 0.19
14 15 0.48
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTTTATTTATT
Found at i:170927 original size:24 final size:24
Alignment explanation
Indices: 170900--170960 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 24
170890 ATAAGCATAC
170900 AAACTACTGATACATCAATACTAA
1 AAACTACTGATACATCAATACTAA
*
170924 AAACTA-TCGATGCATCAATACTAA
1 AAACTACT-GATACATCAATACTAA
170948 AAACTACTGATAC
1 AAACTACTGATAC
170961 TTGTAACTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 1 0.03
24 31 0.94
25 1 0.03
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.25
Consensus pattern (24 bp):
AAACTACTGATACATCAATACTAA
Found at i:171586 original size:49 final size:49
Alignment explanation
Indices: 171525--171624 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
171515 TTTACTCCCT
171525 ATTGACCCAGAGGTCATGCCTGTTACCACATACGATGTTATTTCTAACC
1 ATTGACCCAGAGGTCATGCCTGTTACCACATACGATGTTATTTCTAACC
*
171574 ATTGACCCAGAGGTCATGCTTGTTACCACATACGATGTTATTTCTAACC
1 ATTGACCCAGAGGTCATGCCTGTTACCACATACGATGTTATTTCTAACC
171623 AT
1 AT
171625 CGATACGATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (49 bp):
ATTGACCCAGAGGTCATGCCTGTTACCACATACGATGTTATTTCTAACC
Found at i:185170 original size:27 final size:28
Alignment explanation
Indices: 185122--185179 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
185112 CGATCATTGG
* *
185122 AATTTAGTTTTAGCTTTAAC-TTAGATT
1 AATTTAGTTTTAGATTAAACTTTAGATT
185149 AATTTAG-TTTAGATTAATACTTTAGATT
1 AATTTAGTTTTAGATTAA-ACTTTAGATT
185177 AAT
1 AAT
185180 ATTCTTCACA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 8 0.30
27 9 0.33
28 10 0.37
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.50
Consensus pattern (28 bp):
AATTTAGTTTTAGATTAAACTTTAGATT
Found at i:185174 original size:13 final size:13
Alignment explanation
Indices: 185142--185180 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
185132 TAGCTTTAAC
*
185142 TTAGATTAATTTAGT
1 TTAGATTAA--TACT
185157 TTAGATTAATACT
1 TTAGATTAATACT
185170 TTAGATTAATA
1 TTAGATTAATA
185181 TTCTTCACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 14 0.61
15 9 0.39
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (13 bp):
TTAGATTAATACT
Found at i:188471 original size:12 final size:11
Alignment explanation
Indices: 188455--188493 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
188445 TTTGAGAACA
188455 TAAAATAAAAG
1 TAAAATAAAAG
188466 ATAAAATAAAATG
1 -TAAAATAAAA-G
*
188479 GAAAATAAAAG
1 TAAAATAAAAG
188490 TAAA
1 TAAA
188494 TGTTTGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 4 0.17
12 19 0.79
13 1 0.04
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (11 bp):
TAAAATAAAAG
Found at i:189997 original size:23 final size:23
Alignment explanation
Indices: 189971--190016 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
189961 AAGATAGGTA
* *
189971 TGATTTTCAAAGAATAGTTAAGC
1 TGATTTTAAAAGAATAATTAAGC
189994 TGATTTTAAAAGAATAATTAAGC
1 TGATTTTAAAAGAATAATTAAGC
190017 AAAAAAGAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (23 bp):
TGATTTTAAAAGAATAATTAAGC
Found at i:190295 original size:23 final size:23
Alignment explanation
Indices: 190268--190312 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
190258 AAAAGTCTTC
190268 CTTTTT-CATTTTT-ACTCATTTT
1 CTTTTTGCATTTTTCACT-ATTTT
*
190290 CTTTTTGCCTTTTTCACTATTTT
1 CTTTTTGCATTTTTCACTATTTT
190313 TCTCTTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 11 0.55
24 3 0.15
ACGTcount: A:0.11, C:0.20, G:0.02, T:0.67
Consensus pattern (23 bp):
CTTTTTGCATTTTTCACTATTTT
Found at i:201546 original size:15 final size:15
Alignment explanation
Indices: 201522--201559 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
201512 TCACATTTAT
201522 AAAAAAAAAAAAGAAG
1 AAAAAAAAAAAA-AAG
*
201538 AAAAGAAAAAAAAAG
1 AAAAAAAAAAAAAAG
201553 AAAAAAA
1 AAAAAAA
201560 TTTAAATTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:201559 original size:18 final size:18
Alignment explanation
Indices: 201525--201559 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
201515 CATTTATAAA
*
201525 AAAAAAAAAGAAGAAAAG
1 AAAAAAAAAGAAAAAAAG
201543 AAAAAAAAAGAAAAAAA
1 AAAAAAAAAGAAAAAAA
201560 TTTAAATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAAG
Found at i:201898 original size:13 final size:13
Alignment explanation
Indices: 201880--201904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
201870 CCCATTTTAT
201880 CATTTTTAGCATG
1 CATTTTTAGCATG
201893 CATTTTTAGCAT
1 CATTTTTAGCAT
201905 TTTTAACTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (13 bp):
CATTTTTAGCATG
Found at i:206554 original size:50 final size:50
Alignment explanation
Indices: 206390--206555 Score: 124
Period size: 50 Copynumber: 3.3 Consensus size: 50
206380 CCAATCTCCT
* * * *
206390 TGAAGTTGCAATGGAATGGAGTGAAGTTACAAAACCAAATCCTATA-CCC
1 TGAAGTTGCAGTGGAATGGAGTGAAGCTACTAAACCAAATCTTATATCCC
** * * * * * * *
206439 TTGAAGTTGCAGTGGGTTAGG-TTAAAGGTA-TAGTAGCAAATCTCA-ATCTTCT
1 -TGAAGTTGCAGTGGAAT-GGAGTGAAGCTACTA-AACCAAATCTTATATC--CC
* *
206491 TGAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCTTATATCCC
1 TGAAGTTGCAGTGGAATGGAGTGAAGCTACTAAACCAAATCTTATATCCC
206541 TGAAGTTGCAGTGGA
1 TGAAGTTGCAGTGGA
206556 TCGGATTAGA
Statistics
Matches: 85, Mismatches: 23, Indels: 16
0.69 0.19 0.13
Matches are distributed among these distances:
49 2 0.02
50 46 0.54
51 31 0.36
52 6 0.07
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (50 bp):
TGAAGTTGCAGTGGAATGGAGTGAAGCTACTAAACCAAATCTTATATCCC
Found at i:206622 original size:202 final size:201
Alignment explanation
Indices: 206276--206958 Score: 848
Period size: 202 Copynumber: 3.4 Consensus size: 201
206266 AACAGTAGAT
* * * * *
206276 ATCTCAATCTTCCTAAAGTTATAGTGGAATTGAGTGAAGCTACTACACCAAATCCTATATCTCTA
1 ATCTCAATCTCCCTAAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATATCCCTG
* * * ** *
206341 AAGTTGCAATGGATCGAATTAAAACTATAGTAATGAATCCCAATCTC-CTTGAAGTTGCAATGGA
66 AAGTTGCAGTGGATCGGATTAGAACTACGGTAATGAATCTCAATCTCTC-TGAAGTTGCAAT-GA
* * * * * *
206405 ATGGAGTGAAGTTACAAAACCAAATCCTATACCCTTGAAGTTGCAGTGGGTTAGGTTAAAGGTAT
129 ATGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTAC
* *
206470 AGTAGCAA
194 AGAAGCGA
* * * *
206478 ATCTCAATCTTCTTGAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCTTATATCCCTG
1 ATCTCAATCTCCCTAAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATATCCCTG
* * * *
206543 AAGTTGCAGTGGATCGGATTAGAATTACGGTAATGAATCTTAATCTCTCTGAAGTTACAGTAGAA
66 AAGTTGCAGTGGATCGGATTAGAACTACGGTAATGAATCTCAATCTCTCTGAAGTTGCAAT-GAA
* * * *
206608 TGGAGTGAAGTTACAACATCAAATTCTATACCCCTGAAGTTGTAGTGGGTCAGTTTAAAGTTACA
130 TGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTACA
206673 GAAGCGA
195 GAAGCGA
* ** * * * * *
206680 ATCTCAATCTCCCTGAAGTTGTAGTGGAATGGAGTGAAGTTATTACACTAAATTCTATATCCTTG
1 ATCTCAATCTCCCTAAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATATCCCTG
* * * *
206745 AAGTTGTAGTGGATCGGATTAGAACTACGGTAACGAATCTCAATCTCTTTGAAATTGCAATGAAT
66 AAGTTGCAGTGGATCGGATTAGAACTACGGTAATGAATCTCAATCTCTCTGAAGTTGCAATGAA-
* *
206810 TGGAGTGAACTTACAACACCAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAAGTTACA
130 TGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTACA
*
206875 GAAGTGA
195 GAAGCGA
* * * *
206882 ATCTCAATCTCCCTAAAGTTGCAGTGAAATGGAGTGAAGCTACTACATCAAGTCCTATA-CCCTT
1 ATCTCAATCTCCCTAAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATATCCC-T
*
206946 GAAGTTGTAGTGG
65 GAAGTTGCAGTGG
206959 GTCAGATTGA
Statistics
Matches: 414, Mismatches: 64, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
201 5 0.01
202 408 0.99
203 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (201 bp):
ATCTCAATCTCCCTAAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATATCCCTG
AAGTTGCAGTGGATCGGATTAGAACTACGGTAATGAATCTCAATCTCTCTGAAGTTGCAATGAAT
GGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTACAG
AAGCGA
Found at i:206720 original size:51 final size:51
Alignment explanation
Indices: 206376--206920 Score: 182
Period size: 51 Copynumber: 10.8 Consensus size: 51
206366 TATAGTAATG
* * * *
206376 AATCCCAATCTCCTTGAAGTTGCAATGGAATGGAGTGAAGTTACAAAACCA
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGTTACAGAACCA
* * ** * * * * * *
206427 AATC-CTATAC-CCTTGAAGTTGCAGTGGGTTAGG-TTAAAGGTATAGTAGCA
1 AATCTCAAT-CTCCCTGAAGTTGCAGTGGAAT-GGAGTGAAGTTACAGAACCA
* * * * *
206477 AATCTCAATCTTCTTGAAGTTACAGTGGAATGGAGTGAAGCTACTA-CACCA
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGTTAC-AGAACCA
* * * * **
206528 AATCT-TATATCCCTGAAGTTGCAGTGG-ATCGGATTAGAA-TTACGGTAA-TG
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAAT-GGAGT-GAAGTTACAG-AACCA
* * * * *
206578 AATCTTAATCTCTCTGAAGTTACAGTAGAATGGAGTGAAGTTACA-ACATCA
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGTTACAGA-ACCA
* * * * * * *
206629 AAT-TCTATAC-CCCTGAAGTTGTAGTGG-GT-CAGTTTAAAGTTACAGAAGCG
1 AATCTCAAT-CTCCCTGAAGTTGCAGTGGAATGGAG--TGAAGTTACAGAACCA
* * * *
206679 AATCTCAATCTCCCTGAAGTTGTAGTGGAATGGAGTGAAGTTATTA-CACTA
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGTTA-CAGAACCA
* * * * * * * *
206730 AAT-TCTATATCCTTGAAGTTGTAGTGG-ATCGGATTAGAA-CTACGGTAA-CG
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAAT-GGAGT-GAAGTTACAG-AACCA
** * * *
206780 AATCTCAATCTCTTTGAAATTGCAAT-GAATTGGAGTGAACTTACA-ACACCA
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAA-TGGAGTGAAGTTACAGA-ACCA
* * * * * * ***
206831 AATC-CTATAC-CCCTAAAGTTGCAGTGG-GTCAGATTAAAGTTACAGAAGTG
1 AATCTCAAT-CTCCCTGAAGTTGCAGTGGAAT-GGAGTGAAGTTACAGAACCA
* *
206881 AATCTCAATCTCCCTAAAGTTGCAGTGAAATGGAGTGAAG
1 AATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAG
206921 CTACTACATC
Statistics
Matches: 351, Mismatches: 102, Indels: 82
0.66 0.19 0.15
Matches are distributed among these distances:
48 2 0.01
49 8 0.02
50 165 0.47
51 167 0.48
52 7 0.02
53 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (51 bp):
AATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGTTACAGAACCA
Found at i:206885 original size:303 final size:303
Alignment explanation
Indices: 206276--206963 Score: 730
Period size: 303 Copynumber: 2.3 Consensus size: 303
206266 AACAGTAGAT
* * * * * * * * *
206276 ATCTCAATCTTCCTAAAGTTATAGTGGAATTGAGTGAAGCTACTACACCAAATCCTATATCTCTA
1 ATCTCAATCTCCCTAAAGTTACAGTGAAATGGAGTGAAGCTACAACATCAAATCCTATACCCCTG
* * * * ** * * *
206341 AAGTTGCAATGGATC-GAATTAAAACTATAGTAA-TGAATCCCAATCTCCTTGAAGTTGCAATGG
66 AAGTTGTAGTGGGTCAG-TTTAAAGTTACAG-AAGCGAATCCCAATCTCCCTGAAGTTGCAATGG
* *
206404 AATGGAGTGAAGTTACAAAACCAAATCCTATACCCTTGAAGTTGCAGTGGGTTAGGTTAAAGGTA
129 AATGGAGTGAAGTTACAAAACCAAATCCTATACCCTTGAAGTTGCAGTGGGATAGGTTAAAGCTA
* * * * * *
206469 TAGTAGCAAATCTCAATCTTCTTGAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCTT
194 CAGTAACAAATCTCAATCTTCTTGAAATTACAATGGAATGGAGTGAAGCTACAACACCAAATCCT
* * * *
206534 ATATCCCTGAAGTTGCAGTGGATCGGATTAGAATTACGGTAATGA
259 ATACCCCTAAAGTTGCAGTGGATCAGATTAGAATTACAGTAATGA
* * * * *
206579 ATCTTAATCTCTCTGAAGTTACAGT-AGAATGGAGTGAAGTTACAACATCAAATTCTATACCCCT
1 ATCTCAATCTCCCTAAAGTTACAGTGA-AATGGAGTGAAGCTACAACATCAAATCCTATACCCCT
* * *
206643 GAAGTTGTAGTGGGTCAGTTTAAAGTTACAGAAGCGAATCTCAATCTCCCTGAAGTTGTAGTGGA
65 GAAGTTGTAGTGGGTCAGTTTAAAGTTACAGAAGCGAATCCCAATCTCCCTGAAGTTGCAATGGA
** * * * * * *
206708 ATGGAGTGAAGTTATTACACTAAATTCTATATCCTTGAAGTTGTAGT-GGATCGGATTAGAA-CT
130 ATGGAGTGAAGTTACAAAACCAAATCCTATACCCTTGAAGTTGCAGTGGGATAGG-TTA-AAGCT
* * *
206771 ACGGTAACGAATCTCAATC-TCTTTGAAATTGCAAT-GAATTGGAGTGAA-CTTACAACACCAAA
193 ACAGTAACAAATCTCAATCTTC-TTGAAATTACAATGGAA-TGGAGTGAAGC-TACAACACCAAA
*
206833 TCCTATACCCCTAAAGTTGCAGTGGGTCAGATTA-AAGTTACAG-AAGTGA
255 TCCTATACCCCTAAAGTTGCAGTGGATCAGATTAGAA-TTACAGTAA-TGA
* * * *
206882 ATCTCAATCTCCCTAAAGTTGCAGTGAAATGGAGTGAAGCTACTACATCAAGTCCTATACCCTTG
1 ATCTCAATCTCCCTAAAGTTACAGTGAAATGGAGTGAAGCTACAACATCAAATCCTATACCCCTG
206947 AAGTTGTAGTGGGTCAG
66 AAGTTGTAGTGGGTCAG
206964 ATTGAAGCTA
Statistics
Matches: 315, Mismatches: 59, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
302 17 0.05
303 294 0.93
304 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (303 bp):
ATCTCAATCTCCCTAAAGTTACAGTGAAATGGAGTGAAGCTACAACATCAAATCCTATACCCCTG
AAGTTGTAGTGGGTCAGTTTAAAGTTACAGAAGCGAATCCCAATCTCCCTGAAGTTGCAATGGAA
TGGAGTGAAGTTACAAAACCAAATCCTATACCCTTGAAGTTGCAGTGGGATAGGTTAAAGCTACA
GTAACAAATCTCAATCTTCTTGAAATTACAATGGAATGGAGTGAAGCTACAACACCAAATCCTAT
ACCCCTAAAGTTGCAGTGGATCAGATTAGAATTACAGTAATGA
Found at i:206961 original size:101 final size:101
Alignment explanation
Indices: 206276--206966 Score: 626
Period size: 101 Copynumber: 6.8 Consensus size: 101
206266 AACAGTAGAT
* * ** * *
206276 ATCTCAATCTTCCTAAAGTTATAGTGGAATTGAGTGAAGCTACTACACCAAATCCTATA-TCTCT
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATACCCT-T
* * * ** * *
206340 AAAGTTGCAATGGATC-GAATTAAAACTATAGTAATGA
65 GAAGTTGCAGTGGGTCAG-ATTAAAGTTACAGTAACGA
* * * * * *
206377 ATCCCAATCTCCTTGAAGTTGCAATGGAATGGAGTGAAGTTACAAAACCAAATCCTATACCCTTG
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATACCCTTG
* * * * * *
206442 AAGTTGCAGTGGGTTAGGTTAAAGGTATAGTAGCAA
66 AAGTTGCAGTGGGTCAGATTAAAGTTACAGTAACGA
* * * *
206478 ATCTCAATCTTCTTGAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCTTATATCCC-T
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATA-CCCTT
* * * *
206542 GAAGTTGCAGTGGATCGGATTAGAA-TTACGGTAATGA
65 GAAGTTGCAGTGGGTCAGATTA-AAGTTACAGTAACGA
* * * * * * * * *
206579 ATCTTAATCTCTCTGAAGTTACAGTAGAATGGAGTGAAGTTACAACATCAAATTCTATACCCCTG
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATACCCTTG
* *
206644 AAGTTGTAGTGGGTCAGTTTAAAGTTACAG-AAGCGA
66 AAGTTGCAGTGGGTCAGATTAAAGTTACAGTAA-CGA
* * * * * *
206680 ATCTCAATCTCCCTGAAGTTGTAGTGGAATGGAGTGAAGTTATTACACTAAATTCTATATCCTTG
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATACCCTTG
* * * * *
206745 AAGTTGTAGTGGATCGGATTAGAA-CTACGGTAACGA
66 AAGTTGCAGTGGGTCAGATTA-AAGTTACAGTAACGA
** * * * *
206781 ATCTCAATCTCTTTGAAATTGCAAT-GAATTGGAGTGAA-CTTACAACACCAAATCCTATACCCC
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAA-TGGAGTGAAGC-TACTACACCAAATCCTATACCCT
* *
206844 TAAAGTTGCAGTGGGTCAGATTAAAGTTACAG-AAGTGA
64 TGAAGTTGCAGTGGGTCAGATTAAAGTTACAGTAA-CGA
* * * *
206882 ATCTCAATCTCCCTAAAGTTGCAGTGAAATGGAGTGAAGCTACTACATCAAGTCCTATACCCTTG
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATACCCTTG
*
206947 AAGTTGTAGTGGGTCAGATT
66 AAGTTGCAGTGGGTCAGATT
206967 GAAGCTAGGA
Statistics
Matches: 472, Mismatches: 103, Indels: 30
0.78 0.17 0.05
Matches are distributed among these distances:
100 14 0.03
101 443 0.94
102 15 0.03
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (101 bp):
ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACCAAATCCTATACCCTTG
AAGTTGCAGTGGGTCAGATTAAAGTTACAGTAACGA
Found at i:206995 original size:202 final size:200
Alignment explanation
Indices: 206276--207136 Score: 744
Period size: 202 Copynumber: 4.3 Consensus size: 200
206266 AACAGTAGAT
* * ** * *
206276 ATCTCAATCTTCCTAAAGTTATAGTGGAATTGAGTGAAGCTACTACACCAAATCCTATA-TCTCT
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACA-CAAATCCTATACCCT-T
* * * * * * * * ** * *
206340 AAAGTTGCAATGGATCGAATTAAAACTATAGTAATG-AATCCCAATCTCCTTGAAGTTGCAATGG
64 GAAGTTGTAGTGGATCGGATTAGAACTA-CGGAAAGCAAT-CTTATCTCTTTGAAGTTGCAATAG
* * * * *
206404 AATGGAGTGAAGTTACAAAACCAAATCCTATACCCTTGAAGTTGCAGTGGGTTAGGTTAAAGGTA
127 AATGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTA
* * *
206469 TAGTAGCAA
192 CAGAAGCGA
* * * *
206478 ATCTCAATCTTCTTGAAGTTACAGTGGAATGGAGTGAAGCTACTACACCAAATCTTATATCCC-T
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACA-CAAATCCTATA-CCCTT
* * * * * *
206542 GAAGTTGCAGTGGATCGGATTAGAATTACGGTAATG-AATCTTAATCTCTCTGAAGTTACAGTAG
64 GAAGTTGTAGTGGATCGGATTAGAACTACGG-AAAGCAATCTT-ATCTCTTTGAAGTTGCAATAG
* * * *
206606 AATGGAGTGAAGTTACAACATCAAATTCTATACCCCTGAAGTTGTAGTGGGTCAGTTTAAAGTTA
127 AATGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTA
206671 CAGAAGCGA
192 CAGAAGCGA
* * * * *
206680 ATCTCAATCTCCCTGAAGTTGTAGTGGAATGGAGTGAAGTTATTACACTAAATTCTATATCCTTG
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACAC-AAATCCTATACCCTTG
* * *
206745 AAGTTGTAGTGGATCGGATTAGAACTACGGTAA-CGAATCTCAATCTCTTTGAAATTGCAAT-GA
65 AAGTTGTAGTGGATCGGATTAGAACTACGGAAAGC-AATCT-TATCTCTTTGAAGTTGCAATAGA
* *
206808 ATTGGAGTGAACTTACAACACCAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTAAAGTTA
128 A-TGGAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTA
*
206873 CAGAAGTGA
192 CAGAAGCGA
* * *
206882 ATCTCAATCTCCCTAAAGTTGCAGTGAAATGGAGTGAAGCTACTACATCAAGTCCTATACCCTTG
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACA-CAAATCCTATACCCTTG
* * * * *
206947 AAGTTGTAGTGGGTCAGATT-GAAGCTA-GGAAAGCAAATCCTTATCTCTTTAAAGTTGTAGCAG
65 AAGTTGTAGTGGATCGGATTAGAA-CTACGGAAAGC-AAT-CTTATCTCTTTGAAGTTGCA--AT
* * * * * * * * *
207010 AGCAA--GA-T-ACAGCTACAAAACCATATCCTATATCCCTAAAGTTGTAGTGGATCGGGTTAAA
125 AG-AATGGAGTGA-AGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAA
*
207071 ---ACCATGATAGTGA
188 GTTA-CA-GA-AGCGA
* * * *
207084 ATCTTAATCTCCCTGAAGTTGAAGTGGAATGGAGTAAAGCTACAACAACAAAT
1 ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTAC-ACAAAT
207137 TTTATCTCTT
Statistics
Matches: 547, Mismatches: 89, Indels: 46
0.80 0.13 0.07
Matches are distributed among these distances:
199 1 0.00
200 2 0.00
201 19 0.03
202 514 0.94
203 6 0.01
204 2 0.00
205 1 0.00
206 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (200 bp):
ATCTCAATCTCCCTGAAGTTGCAGTGGAATGGAGTGAAGCTACTACACAAATCCTATACCCTTGA
AGTTGTAGTGGATCGGATTAGAACTACGGAAAGCAATCTTATCTCTTTGAAGTTGCAATAGAATG
GAGTGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTAAAGTTACAGA
AGCGA
Found at i:207125 original size:101 final size:101
Alignment explanation
Indices: 206276--207136 Score: 554
Period size: 101 Copynumber: 8.5 Consensus size: 101
206266 AACAGTAGAT
* * * * *
206276 ATCTCAATCTTCCTAAAGTT-ATAGTGGAATTGAGTGAAGCTACTACACCAAATCCTATATCTCT
1 ATCTCAATCTCCCTGAAGTTGA-AGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCT
* * **
206340 AAAGTTGCAATGGATC-GAATTAAAACTAT-AGTAATGA
65 GAAGTTGCAGTGGATCAG-ATTAAAACTATGA-TAGCGA
* * * *
206377 ATCCCAATCTCCTTGAAGTTGCAA-TGGAATGGAGTGAAGTTACAAAACCAAATCCTATA-CCCT
1 ATCTCAATCTCCCTGAAGTTG-AAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCC-
* * * ** *
206440 TGAAGTTGCAGTGGGTTAGGTTAAAGGTAT-AGTAGCAA
64 TGAAGTTGCAGTGGATCAGATTAAAACTATGA-TAGCGA
* * * *
206478 ATCTCAATCTTCTTGAAGTT-ACAGTGGAATGGAGTGAAGCTACTACACCAAATCTTATATCCCT
1 ATCTCAATCTCCCTGAAGTTGA-AGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCT
* * * * * **
206542 GAAGTTGCAGTGGATCGGATTAGAATTACGGTAATGA
65 GAAGTTGCAGTGGATCAGATTAAAACTATGATAGCGA
* * * * * * *
206579 ATCTTAATCTCTCTGAAGTT-ACAGTAGAATGGAGTGAAGTTACAACATCAAATTCTATACCCCT
1 ATCTCAATCTCCCTGAAGTTGA-AGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCT
* * * ** *
206643 GAAGTTGTAGTGGGTCAGTTTAAAGTTACAGA-AGCGA
65 GAAGTTGCAGTGGATCAGATTAAAACTA-TGATAGCGA
* * ** * * *
206680 ATCTCAATCTCCCTGAAGTTGTAGTGGAATGGAGTGAAGTTATTACACTAAATTCTATATCCTTG
1 ATCTCAATCTCCCTGAAGTTGAAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTG
* * * * * *
206745 AAGTTGTAGTGGATCGGATTAGAACTACGGTAACGA
66 AAGTTGCAGTGGATCAGATTAAAACTATGATAGCGA
** * *
206781 ATCTCAATCTCTTTGAAATTGCAA-T-GAATTGGAGTGAA-CTTACAACACCAAATCCTATACCC
1 ATCTCAATCTCCCTGAAGTTG-AAGTGGAA-TGGAGTGAAGC-TACAACACCAAATCCTATATCC
* * ** * *
206843 CTAAAGTTGCAGTGGGTCAGATTAAAGTTACAGA-AGTGA
63 CTGAAGTTGCAGTGGATCAGATTAAAACTA-TGATAGCGA
* * * * * *
206882 ATCTCAATCTCCCTAAAGTTGCAGTGAAATGGAGTGAAGCTACTACATCAAGTCCTATA-CCCTT
1 ATCTCAATCTCCCTGAAGTTGAAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCC-T
* * * * * * *
206946 GAAGTTGTAGTGGGTCAGATTGAAGCTAGGAAAGCAA
65 GAAGTTGCAGTGGATCAGATTAAAACTATGATAGCGA
* ** * * * * *
206983 ATC-CTTATCTCTTTAAAGTTGTAGCAGAGCAA--GA-T-ACAGCTACAAAACCATATCCTATAT
1 ATCTC-AATCTCCCTGAAGTTG-A--AGTGGAATGGAGTGA-AGCTACAACACCAAATCCTATAT
* * * * * *
207043 CCCTAAAGTTGTAGTGGATCGGGTTAAAACCATGATAGTGA
61 CCCTGAAGTTGCAGTGGATCAGATTAAAACTATGATAGCGA
* * *
207084 ATCTTAATCTCCCTGAAGTTGAAGTGGAATGGAGTAAAGCTACAACAACAAAT
1 ATCTCAATCTCCCTGAAGTTGAAGTGGAATGGAGTGAAGCTACAACACCAAAT
207137 TTTATCTCTT
Statistics
Matches: 582, Mismatches: 147, Indels: 62
0.74 0.19 0.08
Matches are distributed among these distances:
98 5 0.01
99 1 0.00
100 18 0.03
101 535 0.92
102 17 0.03
103 1 0.00
104 5 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (101 bp):
ATCTCAATCTCCCTGAAGTTGAAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATATCCCTG
AAGTTGCAGTGGATCAGATTAAAACTATGATAGCGA
Found at i:207130 original size:303 final size:302
Alignment explanation
Indices: 206276--207136 Score: 689
Period size: 303 Copynumber: 2.8 Consensus size: 302
206266 AACAGTAGAT
* * * * * * * * *
206276 ATCTCAATCTTCCTAAAGTTATAGTGGAATTGAGTGAAGCTACTACACCAAATCCTATATCTCTA
1 ATCTCAATCTCCCTAAAGTTACAGTAGAATGGAGTGAAGCTACAACATCAAATCCTATACCCCTG
* * * * * * * * *
206341 AAGTTGCAATGGATC-GAATTAAAACTATAGTAATG--AATCCCAATCTCCTTGAAGTTGCA-AT
66 AAGTTGTAGTGGGTCAG-ATTAAAGCTACAG-AA-GCAAATCTCAATCTCCCTAAAGTTGTAGA-
* * * * *
206402 GGAATGGAGTGAAGTTACAAAACCAAATCCTATA-CCCTTGAAGTTGCAGTGGGTTAGG-TTAAA
127 GGAA-GGAGTGAAGCTACAAAACCAAATCCTATATCCC-TAAAGTTGTAGT-GGATCGGATTAAA
*** * * * * *
206465 GGTA-TAGTAGCAAATCTCAATCTTCTTGAAGTT-ACAGTGGAATGGAGTGAAGCTACTACACCA
189 ACCACGA-TAACGAATCTCAATCTCCTTGAAGTTGA-AGTGGAATGGAGTGAAGCTACAACACCA
* * * * *
206528 AATCTTATATCCCTGAAGTTGCAGTGGATCGGATTAGAATTACGGTAATGA
252 AATCCTATACCCCTAAAGTTGCAGTGGATCAGATTAGAATTACAGTAATGA
* * * * *
206579 ATCTTAATCTCTCTGAAGTTACAGTAGAATGGAGTGAAGTTACAACATCAAATTCTATACCCCTG
1 ATCTCAATCTCCCTAAAGTTACAGTAGAATGGAGTGAAGCTACAACATCAAATCCTATACCCCTG
* * * * *
206644 AAGTTGTAGTGGGTCAGTTTAAAGTTACAGAAGCGAATCTCAATCTCCCTGAAGTTGTAGTGGAA
66 AAGTTGTAGTGGGTCAGATTAAAGCTACAGAAGCAAATCTCAATCTCCCTAAAGTTGTAGAGGAA
* ** * * * * * * *
206709 TGGAGTGAAGTTATTACACTAAATTCTATATCCTTGAAGTTGTAGTGGATCGGATTAGAACTACG
131 -GGAGTGAAGCTACAAAACCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTAAAACCACG
* * *
206774 GTAACGAATCTCAATCTCTTTGAAATTGCAA-T-GAATTGGAGTGAA-CTTACAACACCAAATCC
195 ATAACGAATCTCAATCTCCTTGAAGTTG-AAGTGGAA-TGGAGTGAAGC-TACAACACCAAATCC
*
206836 TATACCCCTAAAGTTGCAGTGGGTCAGATTA-AAGTTACAG-AAGTGA
257 TATACCCCTAAAGTTGCAGTGGATCAGATTAGAA-TTACAGTAA-TGA
* * * *
206882 ATCTCAATCTCCCTAAAGTTGCAGT-GAAATGGAGTGAAGCTACTACATCAAGTCCTATACCCTT
1 ATCTCAATCTCCCTAAAGTTACAGTAG-AATGGAGTGAAGCTACAACATCAAATCCTATACCCCT
* * * **
206946 GAAGTTGTAGTGGGTCAGATTGAAGCTA-GGAAAGCAAATC-CTTATCTCTTTAAAGTTGTAGCA
65 GAAGTTGTAGTGGGTCAGATTAAAGCTACAG-AAGCAAATCTC-AATCTCCCTAAAGTTGTAG-A
* *
207009 GAGCAA-GA-T-ACAGCTACAAAACCATATCCTATATCCCTAAAGTTGTAGTGGATCGGGTTAAA
127 G-G-AAGGAGTGA-AGCTACAAAACCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTAAA
* ** * * * *
207071 ACCATGATAGTGAATCTTAATCTCCCTGAAGTTGAAGTGGAATGGAGTAAAGCTACAACAACAAA
189 ACCACGATAACGAATCTCAATCTCCTTGAAGTTGAAGTGGAATGGAGTGAAGCTACAACACCAAA
207136 T
254 T
207137 TTTATCTCTT
Statistics
Matches: 443, Mismatches: 92, Indels: 46
0.76 0.16 0.08
Matches are distributed among these distances:
301 1 0.00
302 21 0.05
303 406 0.92
304 11 0.02
305 2 0.00
306 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (302 bp):
ATCTCAATCTCCCTAAAGTTACAGTAGAATGGAGTGAAGCTACAACATCAAATCCTATACCCCTG
AAGTTGTAGTGGGTCAGATTAAAGCTACAGAAGCAAATCTCAATCTCCCTAAAGTTGTAGAGGAA
GGAGTGAAGCTACAAAACCAAATCCTATATCCCTAAAGTTGTAGTGGATCGGATTAAAACCACGA
TAACGAATCTCAATCTCCTTGAAGTTGAAGTGGAATGGAGTGAAGCTACAACACCAAATCCTATA
CCCCTAAAGTTGCAGTGGATCAGATTAGAATTACAGTAATGA
Found at i:208894 original size:14 final size:12
Alignment explanation
Indices: 208862--208973 Score: 59
Period size: 12 Copynumber: 8.9 Consensus size: 12
208852 GCCCTTTTCA
*
208862 TTTTGTTTA-TT
1 TTTTATTTATTT
*
208873 TTTAATTTAATCTT
1 TTTTATTT-AT-TT
208887 TTTTATTTATTT
1 TTTTATTTATTT
208899 TTATTATTTTATTT
1 TT-TTA-TTTATTT
*
208913 ATTTTAATATTCA-AT
1 -TTTT-AT-TT-ATTT
**
208928 TTGCATTTATTT
1 TTTTATTTATTT
*
208940 ATTTATTTATTT
1 TTTTATTTATTT
*
208952 TTATA-TTATTT
1 TTTTATTTATTT
*
208963 ATTTATTTATT
1 TTTTATTTATT
208974 ATTGTTGCTT
Statistics
Matches: 76, Mismatches: 14, Indels: 21
0.68 0.13 0.19
Matches are distributed among these distances:
11 16 0.21
12 25 0.33
13 7 0.09
14 21 0.28
15 6 0.08
16 1 0.01
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTTATTTATTT
Found at i:208905 original size:9 final size:10
Alignment explanation
Indices: 208886--208976 Score: 64
Period size: 11 Copynumber: 8.8 Consensus size: 10
208876 AATTTAATCT
208886 TTTTTATTTA
1 TTTTTATTTA
208896 TTTTTA-TTA
1 TTTTTATTTA
208905 -TTTTATTTA
1 TTTTTATTTA
*
208914 TTTTAATATTCAA
1 TTTT--TATT-TA
**
208927 TTTGCATTTA
1 TTTTTATTTA
208937 TTTATTTATTTA
1 -TT-TTTATTTA
208949 TTTTTA--TA
1 TTTTTATTTA
208957 TTATTTATTTA
1 TT-TTTATTTA
208968 TTTATTATT
1 TTT-TTATT
208977 GTTGCTTATC
Statistics
Matches: 64, Mismatches: 6, Indels: 21
0.70 0.07 0.23
Matches are distributed among these distances:
8 9 0.14
9 10 0.16
10 15 0.23
11 16 0.25
12 10 0.16
13 4 0.06
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.71
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:208923 original size:17 final size:18
Alignment explanation
Indices: 208887--208970 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 18
208877 ATTTAATCTT
*
208887 TTTTATTTATTTTTATTA
1 TTTTATTTATTTTTAATA
208905 TTTTATTTA-TTTTAATA
1 TTTTATTTATTTTTAATA
**
208922 TTCAATTTGCATTTATT--TA
1 TTTTATTT--ATTT-TTAATA
208941 -TTTATTTATTTTT-ATA
1 TTTTATTTATTTTTAATA
208957 TTATTTATTTATTT
1 -T-TTTATTTATTT
208971 ATTATTGTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
15 2 0.04
16 6 0.11
17 13 0.25
18 14 0.26
19 14 0.26
20 2 0.04
21 2 0.04
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.71
Consensus pattern (18 bp):
TTTTATTTATTTTTAATA
Found at i:208941 original size:4 final size:4
Alignment explanation
Indices: 208932--208973 Score: 61
Period size: 4 Copynumber: 10.8 Consensus size: 4
208922 TTCAATTTGC
208932 ATTT ATTT ATTT ATTT A-TT -TTT ATATT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT-TT ATTT ATTT ATTT ATT
208974 ATTGTTGCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 4 0.11
4 27 0.77
5 4 0.11
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:208945 original size:35 final size:31
Alignment explanation
Indices: 208889--208973 Score: 98
Period size: 35 Copynumber: 2.5 Consensus size: 31
208879 TTAATCTTTT
*
208889 TTATTTATTTTTATTATTTTATTTATTTTAATA
1 TTATTTATTTAT-TTA-TTTATTTATTTTAATA
*
208922 TTCAATTTGCATTTATTTATTTATTTATTTTTATA
1 TT--ATTT--ATTTATTTATTTATTTATTTTAATA
208957 TTATTTATTTATTTATT
1 TTATTTATTTATTTATT
208974 ATTGTTGCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
31 11 0.24
33 6 0.13
35 21 0.46
36 3 0.07
37 5 0.11
ACGTcount: A:0.26, C:0.02, G:0.01, T:0.71
Consensus pattern (31 bp):
TTATTTATTTATTTATTTATTTATTTTAATA
Found at i:208946 original size:23 final size:23
Alignment explanation
Indices: 208920--208969 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
208910 TTTATTTTAA
208920 TATTCAATTTGCAT-TTATTTATT
1 TATT-AATTTGCATATTATTTATT
* **
208943 TATTTATTTTTATATTATTTATT
1 TATTAATTTGCATATTATTTATT
208966 TATT
1 TATT
208970 TATTATTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (23 bp):
TATTAATTTGCATATTATTTATT
Found at i:213490 original size:15 final size:15
Alignment explanation
Indices: 213470--213500 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
213460 AGGAACCCTA
213470 CTACCCCTGCACCCC
1 CTACCCCTGCACCCC
213485 CTACCCCTGCACCCC
1 CTACCCCTGCACCCC
213500 C
1 C
213501 GATTGTGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.68, G:0.06, T:0.13
Consensus pattern (15 bp):
CTACCCCTGCACCCC
Found at i:222378 original size:16 final size:17
Alignment explanation
Indices: 222340--222380 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
222330 TAAAAATAAA
222340 ATAAGT-ATAATAAAAC
1 ATAAGTAATAATAAAAC
*
222356 ATTAGTAATAATAAAAC
1 ATAAGTAATAATAAAAC
222373 A-AAGTAAT
1 ATAAGTAAT
222381 GGAAAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (17 bp):
ATAAGTAATAATAAAAC
Found at i:229392 original size:26 final size:27
Alignment explanation
Indices: 229357--229408 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
229347 CTTTACATGT
229357 TTTCTTACTCATGATTCTCTTCTTTTA
1 TTTCTTACTCATGATTCTCTTCTTTTA
** *
229384 TTTC-TACTCATTTTTCTTTTCTTTT
1 TTTCTTACTCATGATTCTCTTCTTTT
229409 TGATTTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.12, C:0.21, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTCTTACTCATGATTCTCTTCTTTTA
Found at i:230535 original size:31 final size:31
Alignment explanation
Indices: 230497--230559 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
230487 CCTTTGTGTC
230497 ACGATCCCTTTGATCCTCATCGGTTCCTCCT
1 ACGATCCCTTTGATCCTCATCGGTTCCTCCT
230528 ACGATCCCTTTGATCCTCATCGGTTCCTCCT
1 ACGATCCCTTTGATCCTCATCGGTTCCTCCT
230559 A
1 A
230560 ACTCTTCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.14, C:0.38, G:0.13, T:0.35
Consensus pattern (31 bp):
ACGATCCCTTTGATCCTCATCGGTTCCTCCT
Found at i:232441 original size:55 final size:55
Alignment explanation
Indices: 232357--232466 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
232347 TGTTAGTGTG
232357 CACTTCAGCACCCGAGAACAGCTCGTTCTATCACTGTTCGTCCAGTAGTTGTCGT
1 CACTTCAGCACCCGAGAACAGCTCGTTCTATCACTGTTCGTCCAGTAGTTGTCGT
232412 CACTTCAGCACCCGAGAACAGCTCGTTCTATCACTGTTCGTCCAGTAGTTGTCGT
1 CACTTCAGCACCCGAGAACAGCTCGTTCTATCACTGTTCGTCCAGTAGTTGTCGT
232467 GCCTGGCTAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.20, C:0.31, G:0.20, T:0.29
Consensus pattern (55 bp):
CACTTCAGCACCCGAGAACAGCTCGTTCTATCACTGTTCGTCCAGTAGTTGTCGT
Found at i:239838 original size:77 final size:77
Alignment explanation
Indices: 239709--239851 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 77
239699 TATTCTTGAT
* * *
239709 AGCTCGTGTGAGCAGCATCGTTAGGGAACAATTATATGCACAGATATCGTATCGATGGTTGGGGT
1 AGCTCGTATGAGCAGCATCGTTAGGGAACAATTATATACACAGATATCGTATCGATGGCTGGGGT
239774 ATCGTCCTCGAC
66 ATCGTCCTCGAC
*
239786 AGCTCGTATGAGCAGCATCGTTAGGGAACAATTATATACACAGATATTGTATCGATGGCTGGGGT
1 AGCTCGTATGAGCAGCATCGTTAGGGAACAATTATATACACAGATATCGTATCGATGGCTGGGGT
239851 A
66 A
239852 CCGCATATGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 62 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (77 bp):
AGCTCGTATGAGCAGCATCGTTAGGGAACAATTATATACACAGATATCGTATCGATGGCTGGGGT
ATCGTCCTCGAC
Found at i:244855 original size:25 final size:25
Alignment explanation
Indices: 244822--244870 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
244812 GGGTTAAATT
*
244822 AATTAAATTAACTCAATTAATTAAC
1 AATTAAATTAACCCAATTAATTAAC
* *
244847 AATTTAATTAACCCAATTTATTAA
1 AATTAAATTAACCCAATTAATTAA
244871 TGAAATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (25 bp):
AATTAAATTAACCCAATTAATTAAC
Found at i:255558 original size:21 final size:22
Alignment explanation
Indices: 255513--255558 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
255503 CTGTTTAATG
** *
255513 TTTTGGATTTTTTTTTTTTGGT
1 TTTTGGATTTTTTTTGCTTGAT
255535 TTTTGGA-TTTTTTTGCTTGAT
1 TTTTGGATTTTTTTTGCTTGAT
255556 TTT
1 TTT
255559 GTTCTTATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.07, C:0.02, G:0.17, T:0.74
Consensus pattern (22 bp):
TTTTGGATTTTTTTTGCTTGAT
Found at i:258642 original size:57 final size:57
Alignment explanation
Indices: 258563--258683 Score: 134
Period size: 57 Copynumber: 2.1 Consensus size: 57
258553 TTATTTCTAC
* ** * * **
258563 ATTTATGTTGTCTTAATATAATTTATAGTTGGTGTCAAAATGACTCTTAATGTGCAT
1 ATTTATGCTGTCCAAATATAATTTAAAGCTACTGTCAAAATGACTCTTAATGTGCAT
* * ** *
258620 ATTTATGCTGTCCAAATGTAATTTAAAGCTACTGTCATAATGTTTCTTCATGTGCAT
1 ATTTATGCTGTCCAAATATAATTTAAAGCTACTGTCAAAATGACTCTTAATGTGCAT
258677 ATTTATG
1 ATTTATG
258684 TTATCAAAAT
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.45
Consensus pattern (57 bp):
ATTTATGCTGTCCAAATATAATTTAAAGCTACTGTCAAAATGACTCTTAATGTGCAT
Found at i:260532 original size:20 final size:20
Alignment explanation
Indices: 260502--260619 Score: 89
Period size: 20 Copynumber: 5.9 Consensus size: 20
260492 TAAATAAATA
*
260502 TGTACGCACTTTGGTGCCTC
1 TGTATGCACTTTGGTGCCTC
* *
260522 TCTATGCACTTCGGTGCCTC
1 TGTATGCACTTTGGTGCCTC
* * ***
260542 TCTATGCAGTTCATTGCCT-
1 TGTATGCACTTTGGTGCCTC
*
260561 TAGTATGCACTCTGGTGCC-C
1 T-GTATGCACTTTGGTGCCTC
* *
260581 ATGTATACACTCTGGTGCC-C
1 -TGTATGCACTTTGGTGCCTC
260601 TTGTATGCACTTTGGTGCC
1 -TGTATGCACTTTGGTGCC
260620 CTAGTTTGAA
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
19 1 0.01
20 77 0.97
21 1 0.01
ACGTcount: A:0.14, C:0.29, G:0.22, T:0.36
Consensus pattern (20 bp):
TGTATGCACTTTGGTGCCTC
Found at i:273542 original size:28 final size:28
Alignment explanation
Indices: 273492--273556 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 28
273482 TATTACCTAT
* *
273492 TTTTTACTCTTTTTATTGTGTAATCCCA
1 TTTTTACTCTCTTTATTGTGTAACCCCA
273520 CTTTTTACTCTCTTTATT-TGTAACCCCA
1 -TTTTTACTCTCTTTATTGTGTAACCCCA
273548 TTTTTACTC
1 TTTTTACTC
273557 CAATTGACTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 9 0.26
28 9 0.26
29 16 0.47
ACGTcount: A:0.17, C:0.23, G:0.05, T:0.55
Consensus pattern (28 bp):
TTTTTACTCTCTTTATTGTGTAACCCCA
Found at i:279730 original size:28 final size:28
Alignment explanation
Indices: 279684--279751 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
279674 CTTTTATGGC
* *
279684 CCCCTTTTTACTCATTTTATTGTGTAAT
1 CCCCTTTTTACACATTTTATTATGTAAT
279712 CCCCTTTTTACAC-TCTTTATTATGTAAT
1 CCCCTTTTTACACAT-TTTATTATGTAAT
279740 CCCCATTTTTAC
1 CCCC-TTTTTAC
279752 TCCAACTGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 1 0.03
28 28 0.78
29 7 0.19
ACGTcount: A:0.19, C:0.26, G:0.04, T:0.50
Consensus pattern (28 bp):
CCCCTTTTTACACATTTTATTATGTAAT
Found at i:280762 original size:36 final size:36
Alignment explanation
Indices: 280715--280803 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
280705 TCTGATCCGT
* *
280715 ATGTTAAGCATGCCACTGCTTCTGATTCTAATTCGC
1 ATGTTAAGCATGCCACTGCTTCTAATTCTAATTCAC
* * *
280751 ATGTTAAGCATGCCATTGTTTCTAATTCTTATTCAC
1 ATGTTAAGCATGCCACTGCTTCTAATTCTAATTCAC
*
280787 ATGTTAAGCATGTCACT
1 ATGTTAAGCATGCCACT
280804 ATGATAAACC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (36 bp):
ATGTTAAGCATGCCACTGCTTCTAATTCTAATTCAC
Found at i:280838 original size:46 final size:46
Alignment explanation
Indices: 280781--280934 Score: 188
Period size: 46 Copynumber: 3.4 Consensus size: 46
280771 TCTAATTCTT
* *
280781 ATTCACATGTTAAGCATGTCACTATGATAAACCATAATGAGATATA
1 ATTCGCATGTTAAGCATGTCACTATGATAAACCATAATGAGATATG
* * *
280827 ATTCGCATGTTAAGCATGTTATTGTGAT--ACCATAATGAGATATG
1 ATTCGCATGTTAAGCATGTCACTATGATAAACCATAATGAGATATG
* * **
280871 ATTCGCATGTTAAGCATGCCACTGA-GTTAAACTGTAATGAGATATG
1 ATTCGCATGTTAAGCATGTCACT-ATGATAAACCATAATGAGATATG
*
280917 ATTCGCATGTAAAGCATG
1 ATTCGCATGTTAAGCATG
280935 CCTACTGAAA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
44 37 0.40
46 55 0.60
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (46 bp):
ATTCGCATGTTAAGCATGTCACTATGATAAACCATAATGAGATATG
Found at i:290670 original size:12 final size:12
Alignment explanation
Indices: 290653--290711 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
290643 AATTAATCAC
290653 TTTAATATTAAA
1 TTTAATATTAAA
290665 TTTAATA-TAATA
1 TTTAATATTAA-A
* *
290677 TTT-ATCTT-GA
1 TTTAATATTAAA
290687 TATT-ATATTAAA
1 T-TTAATATTAAA
290699 TTTAATATTAAA
1 TTTAATATTAAA
290711 T
1 T
290712 CTTATTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
10 2 0.05
11 13 0.34
12 23 0.61
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:290707 original size:17 final size:17
Alignment explanation
Indices: 290657--290708 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
290647 AATCACTTTA
*
290657 ATATTAAATTTAATATA
1 ATATTAAATTTAATATT
* *
290674 ATATT-TATCTTGATATT
1 ATATTAAAT-TTAATATT
290691 ATATTAAATTTAATATT
1 ATATTAAATTTAATATT
290708 A
1 A
290709 AATCTTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 2 0.07
17 24 0.86
18 2 0.07
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATTAAATTTAATATT
Found at i:290845 original size:37 final size:36
Alignment explanation
Indices: 290783--290858 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
290773 GATAATCAAT
*
290783 TTAATATTAAATTAATAAAATACTATTAGAATAATTA
1 TTAATATTAAATTAATAAAATACTATTAAAATAA-TA
*
290820 TTAA-ATTAAATTTAATATTAA-ACTATTAAAATAATA
1 TTAATATTAAA-TTAATA-AAATACTATTAAAATAATA
290856 TTA
1 TTA
290859 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 11 0.31
37 22 0.63
38 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAATACTATTAAAATAATA
Found at i:298170 original size:22 final size:21
Alignment explanation
Indices: 298140--298180 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
298130 TATTTTCATT
* *
298140 AAAATTTAATTTTAACTCCTTA
1 AAAACTTAATCTTAA-TCCTTA
298162 AAAACTTAATCTTAATCCT
1 AAAACTTAATCTTAATCCT
298181 ACATTGGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAACTTAATCTTAATCCTTA
Found at i:298345 original size:67 final size:67
Alignment explanation
Indices: 298236--298399 Score: 217
Period size: 67 Copynumber: 2.4 Consensus size: 67
298226 AGTGTCAATT
* *
298236 TTTTCACTATTTTCATTAAAAAATTAATTTTAATCCTACATTGACTAGAAAATAC-TCTTATAGC
1 TTTTCACTATTTTCAATAAAAAA-TAATTTTAATCCTACATTGACTAGAAAATACTTC-CATAGC
298300 TCAC
64 TCAC
*
298304 TTTTCACCATTTTCAATAAAAAATAATTTTAAT-CTCACATTGACTAGAAAATACTTCCATAGCT
1 TTTTCACTATTTTCAATAAAAAATAATTTTAATCCT-ACATTGACTAGAAAATACTTCCATAGCT
298368 CAC
65 CAC
* * *
298371 TTATTGAATATTTT-GATAAAAAATAATTT
1 TT-TTCACTATTTTCAATAAAAAATAATTT
298400 AAACCCTTAA
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
66 2 0.02
67 53 0.62
68 31 0.36
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.40
Consensus pattern (67 bp):
TTTTCACTATTTTCAATAAAAAATAATTTTAATCCTACATTGACTAGAAAATACTTCCATAGCTC
AC
Found at i:310714 original size:24 final size:24
Alignment explanation
Indices: 310666--310712 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
310656 AAGAGTTAGC
310666 TTGTCAACGCAAATATAAAATAAA
1 TTGTCAACGCAAATATAAAATAAA
*
310690 TTGTCAGA-GCAAAT-TAAGATAAA
1 TTGTCA-ACGCAAATATAAAATAAA
310713 ATGAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
24 12 0.57
25 1 0.05
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.26
Consensus pattern (24 bp):
TTGTCAACGCAAATATAAAATAAA
Found at i:331733 original size:28 final size:27
Alignment explanation
Indices: 331693--331819 Score: 110
Period size: 28 Copynumber: 4.6 Consensus size: 27
331683 TGAAGCGAAA
* * *
331693 GGCTAGGATAGAGCAATGTTCTGATTTT
1 GGCTCGGATAGAGCAATATTCT-ATTCT
*
331721 GGCTCGGATAGAGCGATATTCTGATTCT
1 GGCTCGGATAGAGCAATATTCT-ATTCT
* * **
331749 AGCTTGGATAGAGTGATATTCTATATCT
1 GGCTCGGATAGAGCAATATTCTAT-TCT
* *
331777 GGCTCGGGTAGAGCATTATTCTATTTCT
1 GGCTCGGATAGAGCAATATTCTA-TTCT
* *
331805 GGTTCGGGTAGAGCA
1 GGCTCGGATAGAGCA
331820 TTACTTTGAA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
27 2 0.02
28 80 0.96
29 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (27 bp):
GGCTCGGATAGAGCAATATTCTATTCT
Found at i:331817 original size:56 final size:56
Alignment explanation
Indices: 331757--331966 Score: 178
Period size: 56 Copynumber: 3.8 Consensus size: 56
331747 CTAGCTTGGA
*
331757 TAGAGTGATATTCTATATCTGGCTCGGGTAGAGCATTATTCTATTTCTGGTTCGGG
1 TAGAGCGATATTCTATATCTGGCTCGGGTAGAGCATTATTCTATTTCTGGTTCGGG
* * * * * *
331813 TAGAGC-ATTACTT-TGA-ATTTGGATCGAGTAGAGAATTATTCTATTTCT-ATCTCCGG
1 TAGAGCGA-TA-TTCT-ATATCTGGCTCGGGTAGAGCATTATTCTATTTCTGGT-TCGGG
* * * * *
331869 TAGAGCGTTACTCTAAATCTAGCTTGGGTAGAGCATTATTCTATTTCTGGCTT-GGG
1 TAGAGCGATATTCTATATCTGGCTCGGGTAGAGCATTATTCTATTTCTGG-TTCGGG
* * * * **
331925 TAGAGCGTTATTCTATTTTTGGCTTGGAAAGAGCATTATTCT
1 TAGAGCGATATTCTATATCTGGCTCGGGTAGAGCATTATTCT
331967 GTATCTAGGC
Statistics
Matches: 121, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
55 4 0.03
56 112 0.93
57 4 0.03
58 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.40
Consensus pattern (56 bp):
TAGAGCGATATTCTATATCTGGCTCGGGTAGAGCATTATTCTATTTCTGGTTCGGG
Found at i:331820 original size:28 final size:28
Alignment explanation
Indices: 331765--331966 Score: 155
Period size: 28 Copynumber: 7.2 Consensus size: 28
331755 GATAGAGTGA
* *
331765 TATTCTATATCTGGCTCGGGTAGAGCAT
1 TATTCTATTTCTGGTTCGGGTAGAGCAT
331793 TATTCTATTTCTGGTTCGGGTAGAGCAT
1 TATTCTATTTCTGGTTCGGGTAGAGCAT
* * * *
331821 TACTT-TGAATT-TGGATCGAGTAGAGAAT
1 TA-TTCT-ATTTCTGGTTCGGGTAGAGCAT
* * *
331849 TATTCTATTTCT-ATCTCCGGTAGAGCGT
1 TATTCTATTTCTGGT-TCGGGTAGAGCAT
* ** *
331877 TACTCTAAATCTAGCTT-GGGTAGAGCAT
1 TATTCTATTTCT-GGTTCGGGTAGAGCAT
*
331905 TATTCTATTTCTGGCTT-GGGTAGAGCGT
1 TATTCTATTTCTGG-TTCGGGTAGAGCAT
* **
331933 TATTCTATTTTTGGCTT-GGAAAGAGCAT
1 TATTCTATTTCTGG-TTCGGGTAGAGCAT
331961 TATTCT
1 TATTCT
331967 GTATCTAGGC
Statistics
Matches: 138, Mismatches: 28, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
27 6 0.04
28 125 0.91
29 6 0.04
30 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.23, T:0.40
Consensus pattern (28 bp):
TATTCTATTTCTGGTTCGGGTAGAGCAT
Found at i:333838 original size:25 final size:25
Alignment explanation
Indices: 333804--333854 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
333794 TCTTTAAGGC
333804 CGATTGAGGCCTAAAGGTTAGCTAA
1 CGATTGAGGCCTAAAGGTTAGCTAA
333829 CGATTGAGGCCTAAAGGTTAGCTAA
1 CGATTGAGGCCTAAAGGTTAGCTAA
333854 C
1 C
333855 ATACTTTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (25 bp):
CGATTGAGGCCTAAAGGTTAGCTAA
Found at i:338253 original size:21 final size:21
Alignment explanation
Indices: 338221--338260 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
338211 AAAGTTAGAG
338221 TCCTCAATTGACCTTTCAAGT
1 TCCTCAATTGACCTTTCAAGT
338242 TCCT-AATATGACCTTTCAA
1 TCCTCAAT-TGACCTTTCAA
338261 AATTGGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (21 bp):
TCCTCAATTGACCTTTCAAGT
Done.