Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011911.1 Kokia drynarioides strain JFW-HI SEQ_126909, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 344796
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33

Warning! 122 characters in sequence are not A, C, G, or T


File 2 of 2

Found at i:339083 original size:51 final size:50

Alignment explanation


    Indices: 339016--339139  Score: 178
    Period size: 50  Copynumber: 2.5  Consensus size: 50

     339006 TATGAAAATT

                              *                         *    * 
     339016 AATTAC-TAATGCATGACTTTATTTAAGATGCAAACTTTAACTATCATGGG
          1 AATTACATAATGCATGACATTATTTAAGATGCAAA-TTTAACTAACATGAG

                                *     *                       
     339066 AATTACATAATGCATGACATAATTTATGATGCAAATTTAACTAACATGAG
          1 AATTACATAATGCATGACATTATTTAAGATGCAAATTTAACTAACATGAG

             *                      
     339116 AGTTACATAATGCATGACATTATT
          1 AATTACATAATGCATGACATTATT

     339140 AAATGTAGAA


Statistics
Matches: 66,  Mismatches: 7, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  50   41  0.62
  51   25  0.38

ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35


Consensus pattern (50 bp):   
AATTACATAATGCATGACATTATTTAAGATGCAAATTTAACTAACATGAG

Found at i:343185 original size:3 final size:3

Alignment explanation


    Indices: 343177--343201  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

     343167 TGAAATATAG

                                             
     343177 TAA TAA TAA TAA TAA TAA TAA TAA T
          1 TAA TAA TAA TAA TAA TAA TAA TAA T

     343202 TAAATGAGAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (3 bp):   
TAA


Done.