Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011916.1 Kokia drynarioides strain JFW-HI SEQ_126914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1982
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:1189 original size:53 final size:53

Alignment explanation


    Indices: 1109--1215  Score: 214
    Period size: 53  Copynumber: 2.0  Consensus size: 53

       1099 TCATTAGTAG

                                                                 
       1109 AATGTAAATCTCTCTCTAGAGCTTCCCTTTCAATGTTGTCACGTTCTTCAAGT
          1 AATGTAAATCTCTCTCTAGAGCTTCCCTTTCAATGTTGTCACGTTCTTCAAGT

                                                                 
       1162 AATGTAAATCTCTCTCTAGAGCTTCCCTTTCAATGTTGTCACGTTCTTCAAGT
          1 AATGTAAATCTCTCTCTAGAGCTTCCCTTTCAATGTTGTCACGTTCTTCAAGT

             
       1215 A
          1 A

       1216 TCGAAAGAAC


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  53   54  1.00

ACGTcount: A:0.23, C:0.24, G:0.13, T:0.39


Consensus pattern (53 bp):   
AATGTAAATCTCTCTCTAGAGCTTCCCTTTCAATGTTGTCACGTTCTTCAAGT
Done.