genome.fa.s11927.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011927.1 Kokia drynarioides strain JFW-HI SEQ_126925, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95113

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--202	78	2.6	77	79	1	209	23	30	21	25	1.99
705--759	16	3.4	16	76	16	51	41	0	1	56	1.10
707--757	27	1.9	27	92	4	86	39	0	1	58	1.09
793--834	20	2.2	20	86	4	59	38	33	14	14	1.86
2248--2463	30	7.2	30	78	3	222	35	22	3	38	1.71
4419--4448	7	4.3	7	95	0	51	26	43	0	30	1.55
13761--13801	17	2.4	17	83	0	55	46	7	0	46	1.30
14016--14049	16	2.1	16	100	0	68	23	29	0	47	1.52
14393--14418	13	2.0	13	100	0	52	38	15	7	38	1.76
17209--17319	28	4.0	28	88	1	170	31	14	29	24	1.94
21228--21449	30	7.5	30	77	4	182	37	20	3	38	1.69
21228--21440	59	3.6	60	80	6	227	38	20	3	37	1.69
52802--52977	88	2.0	88	100	0	352	27	17	20	35	1.94
55330--55377	23	2.1	23	88	0	69	45	14	0	39	1.45
65266--65676	42	10.1	42	78	9	413	30	26	17	26	1.97
65278--65611	122	2.8	119	80	5	350	30	25	16	27	1.96
65271--65670	161	2.5	159	82	4	446	29	26	17	27	1.97
65265--65676	203	2.0	202	81	8	471	30	25	17	26	1.97
65273--65674	80	5.0	81	81	6	431	29	26	17	26	1.97
67333--67366	17	2.0	17	88	0	50	17	8	2	70	1.25
67440--67666	30	7.6	30	80	11	227	37	22	3	36	1.70
67440--67607	59	2.8	59	81	10	209	39	22	1	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74472--74503	6	5.3	6	100	0	64	0	15	0	84	0.63
74522--74569	24	2.0	24	88	8	71	4	22	8	64	1.38
74859--74894	18	2.0	18	89	10	56	2	22	2	72	1.11
90943--91054	28	4.0	28	86	0	134	33	15	27	24	1.95
90948--91053	56	1.9	56	86	0	149	33	15	28	23	1.95
91771--91818	20	2.3	21	82	3	53	29	12	27	31	1.93

Tables:   1

The End!