Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011929.1 Kokia drynarioides strain JFW-HI SEQ_126927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62393
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Found at i:281 original size:31 final size:31
Alignment explanation
Indices: 246--319 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
236 CAAAATTTCT
*
246 AAAAATTCTAATACGACCCCTAAATTTTCCA
1 AAAAATTCTAATACAACCCCTAAATTTTCCA
*
277 AAAAATT-TGAATTCAACCCCTAAATTTTCCA
1 AAAAATTCT-AATACAACCCCTAAATTTTCCA
308 AAAAATTCTAAT
1 AAAAATTCTAAT
320 TTAACCTCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.45, C:0.22, G:0.03, T:0.31
Consensus pattern (31 bp):
AAAAATTCTAATACAACCCCTAAATTTTCCA
Found at i:331 original size:31 final size:30
Alignment explanation
Indices: 232--372 Score: 113
Period size: 31 Copynumber: 4.6 Consensus size: 30
222 ATTTTTTTGA
* * * *
232 CCCTCAAAATTTCTAAAAATTCTAATACGAC
1 CCCT-AAATTTTCAAAAAATTCTAATTCAAC
263 CCCTAAATTTTCCAAAAAATT-TGAATTCAAC
1 CCCTAAATTTT-CAAAAAATTCT-AATTCAAC
*
294 CCCTAAATTTTCCAAAAAATTCTAATTTAAC
1 CCCTAAATTTT-CAAAAAATTCTAATTCAAC
* * * * * **
325 CTCTAAACTTTCTAAAACTTCCAATTTGAC
1 CCCTAAATTTTCAAAAAATTCTAATTCAAC
*
355 CTCTAAAATTTTCAAAAA
1 CCCT-AAATTTTCAAAAA
373 TTTAAATTTG
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
30 26 0.28
31 66 0.71
32 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.02, T:0.33
Consensus pattern (30 bp):
CCCTAAATTTTCAAAAAATTCTAATTCAAC
Found at i:7463 original size:57 final size:57
Alignment explanation
Indices: 7394--7511 Score: 227
Period size: 57 Copynumber: 2.1 Consensus size: 57
7384 ACTATTCCCG
7394 ATAATACACTGTCAAGTTTCTTAGAATCTACTCTGATACTAATTATCACAATTTCGT
1 ATAATACACTGTCAAGTTTCTTAGAATCTACTCTGATACTAATTATCACAATTTCGT
*
7451 ATAATACACTGTCAAGTTTCTTAGAATCTGCTCTGATACTAATTATCACAATTTCGT
1 ATAATACACTGTCAAGTTTCTTAGAATCTACTCTGATACTAATTATCACAATTTCGT
7508 ATAA
1 ATAA
7512 GAAATCATCC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (57 bp):
ATAATACACTGTCAAGTTTCTTAGAATCTACTCTGATACTAATTATCACAATTTCGT
Found at i:9600 original size:61 final size:61
Alignment explanation
Indices: 9505--9629 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 61
9495 TAGATATGTG
* *
9505 GCGGAGGATGCAAGGGGAGGTGACGTGGCGTTACACAACCAATTAGAAGCGAAGAAATTAT
1 GCGGAGGATGCAAGGGGAGGTGACGTGACGTTACACAACCAATTAGAAGCGAAGAAATGAT
9566 GCGGAGGATGCAAGGGGAGGTGACGTGACGTTACACAACCAATTAGAAGCGAAGAAATGAT
1 GCGGAGGATGCAAGGGGAGGTGACGTGACGTTACACAACCAATTAGAAGCGAAGAAATGAT
9627 GCG
1 GCG
9630 AAACAAAAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.34, C:0.15, G:0.35, T:0.15
Consensus pattern (61 bp):
GCGGAGGATGCAAGGGGAGGTGACGTGACGTTACACAACCAATTAGAAGCGAAGAAATGAT
Found at i:11296 original size:22 final size:22
Alignment explanation
Indices: 11237--11297 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
11227 ATATTACCAG
*
11237 AGAATCTCATTATTAATGTCAA
1 AGAATCTCATTATTTATGTCAA
* *
11259 AGAATTTCATTGTTTATGTCAA
1 AGAATCTCATTATTTATGTCAA
*
11281 AGAATCTCACTATTTAT
1 AGAATCTCATTATTTAT
11298 TTTTTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (22 bp):
AGAATCTCATTATTTATGTCAA
Found at i:11377 original size:92 final size:92
Alignment explanation
Indices: 11225--11398 Score: 215
Period size: 92 Copynumber: 1.9 Consensus size: 92
11215 AATTACAAGA
* * * * * *
11225 GAATATTACCAGAGAATCTCATTATTAATGTCAAAGAATTTCATTGTTTATGTCAAAGAATCTCA
1 GAATATTACCAGAGAATCTCACTATTAATGTCAAAAAATATCACTGTTCATGCCAAAGAATCTCA
* *
11290 CTATTTATTTTTTTTTTTTCTTGCAAT
66 CTATTCATTTTGTTTTTTTCTTGCAAT
* * * *
11317 GAATATTGCCAGAGAATCTCACTATTCATGT-AAGAAAATATCACTGTTCATGCCAGAGAATTTC
1 GAATATTACCAGAGAATCTCACTATTAATGTCAA-AAAATATCACTGTTCATGCCAAAGAATCTC
*
11381 ACTGTTCATTTTGTTTTT
65 ACTATTCATTTTGTTTTT
11399 CTTGTAGGAA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
91 2 0.03
92 66 0.97
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (92 bp):
GAATATTACCAGAGAATCTCACTATTAATGTCAAAAAATATCACTGTTCATGCCAAAGAATCTCA
CTATTCATTTTGTTTTTTTCTTGCAAT
Found at i:11382 original size:22 final size:22
Alignment explanation
Indices: 11323--11389 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
11313 CAATGAATAT
* *
11323 TGCCAGAGAATCTCACTATTCA
1 TGCCAGAGAATATCACTGTTCA
** *
11345 TGTAAGAAAATATCACTGTTCA
1 TGCCAGAGAATATCACTGTTCA
*
11367 TGCCAGAGAATTTCACTGTTCA
1 TGCCAGAGAATATCACTGTTCA
11389 T
1 T
11390 TTTGTTTTTC
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (22 bp):
TGCCAGAGAATATCACTGTTCA
Found at i:13822 original size:6 final size:6
Alignment explanation
Indices: 13813--13851 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
13803 AGTAGGCCCA
*
13813 AAAAAG AAAAAG AAAAAG AAAAAG AAAATG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
13852 TGAAAAAGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:13858 original size:12 final size:12
Alignment explanation
Indices: 13813--13859 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
13803 AGTAGGCCCA
*
13813 AAAAAGAAAAAG
1 AAAATGAAAAAG
*
13825 AAAAAGAAAAAG
1 AAAATGAAAAAG
13837 AAAATGAAAAAG
1 AAAATGAAAAAG
13849 -AAATGAAAAAG
1 AAAATGAAAAAG
13860 GGAGAGGAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 11 0.32
12 23 0.68
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (12 bp):
AAAATGAAAAAG
Found at i:13858 original size:18 final size:16
Alignment explanation
Indices: 13815--13859 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
13805 TAGGCCCAAA
13815 AAAGAAAAAGAAAAAG
1 AAAGAAAAAGAAAAAG
*
13831 AAAAAGAAAATGAAAAAG
1 --AAAGAAAAAGAAAAAG
13849 AAATGAAAAAG
1 AAA-GAAAAAG
13860 GGAGAGGAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 3 0.12
17 6 0.25
18 15 0.62
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAG
Found at i:18673 original size:23 final size:22
Alignment explanation
Indices: 18647--18689 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
18637 TGATTCCAAA
*
18647 TTGATAATGCCTCCAACATATTG
1 TTGATAAT-CCCCCAACATATTG
*
18670 TTGATGATCCCCCAACATAT
1 TTGATAATCCCCCAACATAT
18690 CAAGTTGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (22 bp):
TTGATAATCCCCCAACATATTG
Found at i:21028 original size:20 final size:20
Alignment explanation
Indices: 21003--21045 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
20993 TTTATTACAA
21003 TTTAACCAATGATTTAATTT
1 TTTAACCAATGATTTAATTT
*
21023 TTTAACCAATTATTTAATTT
1 TTTAACCAATGATTTAATTT
21043 TTT
1 TTT
21046 GGGCTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTAACCAATGATTTAATTT
Found at i:28243 original size:24 final size:24
Alignment explanation
Indices: 28216--28264 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
28206 ATGTGGAACT
*
28216 AGTAAAAAATGAATATCCAACTCC
1 AGTAAAAAATGAAGATCCAACTCC
*
28240 AGTAGAAAATGAAGATCCAACTCC
1 AGTAAAAAATGAAGATCCAACTCC
28264 A
1 A
28265 TGTATGGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.18
Consensus pattern (24 bp):
AGTAAAAAATGAAGATCCAACTCC
Found at i:28956 original size:21 final size:21
Alignment explanation
Indices: 28932--28989 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
28922 TAGTGCAAAC
* *
28932 TTCTACTGATACCAGTGACAG
1 TTCTACCGATACAAGTGACAG
**
28953 TTCTACCGATACAAGTGACTC
1 TTCTACCGATACAAGTGACAG
* *
28974 TTCTATCAATACAAGT
1 TTCTACCGATACAAGT
28990 CTTGCTTCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (21 bp):
TTCTACCGATACAAGTGACAG
Found at i:29006 original size:21 final size:20
Alignment explanation
Indices: 28953--29006 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
28943 CCAGTGACAG
28953 TTCTACCGATACAAGTGACTC
1 TTCTACCGATACAAGT-ACTC
* *
28974 TTCTATCAATACAAGT-CTTGC
1 TTCTACCGATACAAGTAC-T-C
28995 TTCTACCGATAC
1 TTCTACCGATAC
29007 TAAAAACTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 1 0.04
20 1 0.04
21 25 0.93
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (20 bp):
TTCTACCGATACAAGTACTC
Found at i:29224 original size:20 final size:20
Alignment explanation
Indices: 29199--29252 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
29189 CTCTAGTGAG
* *
29199 ACTTCTACCGATAGAACTCC
1 ACTTCTACTGATACAACTCC
*
29219 ACTTCTATTGATACAACTCC
1 ACTTCTACTGATACAACTCC
29239 ACTTCTACTGATAC
1 ACTTCTACTGATAC
29253 CTTGAAGACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.31
Consensus pattern (20 bp):
ACTTCTACTGATACAACTCC
Found at i:33859 original size:22 final size:22
Alignment explanation
Indices: 33831--33927 Score: 149
Period size: 22 Copynumber: 4.4 Consensus size: 22
33821 CTGTTGGGAA
*
33831 AACAGAAGCACACACAGTGTTG
1 AACAGAAGCACACACAGTGCTG
33853 AACAGAAGCACACACAGTGCTG
1 AACAGAAGCACACACAGTGCTG
*
33875 AACAGAAGCACACACAGTGCTA
1 AACAGAAGCACACACAGTGCTG
* *
33897 AACAGTAGCACACACAGTACTG
1 AACAGAAGCACACACAGTGCTG
*
33919 AACAAAAGC
1 AACAGAAGC
33928 TCGCTAGCGT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 68 1.00
ACGTcount: A:0.44, C:0.26, G:0.20, T:0.10
Consensus pattern (22 bp):
AACAGAAGCACACACAGTGCTG
Found at i:37504 original size:17 final size:19
Alignment explanation
Indices: 37466--37504 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
37456 TTGTATATCG
*
37466 GGGAGTGTTGGAAGTCGAC
1 GGGAGTGTTGCAAGTCGAC
37485 GGGAG-GTTGCAAGT-GAC
1 GGGAGTGTTGCAAGTCGAC
37502 GGG
1 GGG
37505 TGCGAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 8 0.42
19 5 0.26
ACGTcount: A:0.21, C:0.10, G:0.51, T:0.18
Consensus pattern (19 bp):
GGGAGTGTTGCAAGTCGAC
Found at i:39346 original size:17 final size:17
Alignment explanation
Indices: 39324--39368 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
39314 CGGTTCATGG
*
39324 TTTAAGGTTTATGATTA
1 TTTAAGGTTTAAGATTA
*
39341 TTTAAGGTTTAAGATTT
1 TTTAAGGTTTAAGATTA
*
39358 TTTAAGATTTA
1 TTTAAGGTTTA
39369 GGGAATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (17 bp):
TTTAAGGTTTAAGATTA
Found at i:40504 original size:43 final size:43
Alignment explanation
Indices: 40439--40538 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
40429 AACTGCACAA
40439 TTAATAACATGTCACAATATTAACAAAAGTCAAGTAATATAAT
1 TTAATAACATGTCACAATATTAACAAAAGTCAAGTAATATAAT
* * **
40482 TTAGTAACATGTCACCATATTAACACGAGTCAAGTAATATAAT
1 TTAATAACATGTCACAATATTAACAAAAGTCAAGTAATATAAT
40525 TTAATAACATGTCA
1 TTAATAACATGTCA
40539 ATGAATAACA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (43 bp):
TTAATAACATGTCACAATATTAACAAAAGTCAAGTAATATAAT
Found at i:41894 original size:3 final size:3
Alignment explanation
Indices: 41853--41877 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
41843 TAGATCTTTG
41853 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
41878 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:42104 original size:30 final size:30
Alignment explanation
Indices: 42072--42129 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
42062 ATATAATACA
42072 AAAAT-AATAATTAAATACCAAAATGGTAC
1 AAAATAAATAATTAAATACCAAAATGGTAC
* *
42101 AAAATAAATATTTATATACCAAAATGGTA
1 AAAATAAATAATTAAATACCAAAATGGTA
42130 TCCCCACCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.28
Consensus pattern (30 bp):
AAAATAAATAATTAAATACCAAAATGGTAC
Found at i:42356 original size:12 final size:12
Alignment explanation
Indices: 42339--42378 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
42329 TTTACTCAAC
42339 TAAATAAAAAAT
1 TAAATAAAAAAT
*
42351 TAAATAACAAAT
1 TAAATAAAAAAT
42363 TAAAT-AAAAAT
1 TAAATAAAAAAT
42374 TAAAT
1 TAAAT
42379 TAAACAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (12 bp):
TAAATAAAAAAT
Found at i:61807 original size:17 final size:18
Alignment explanation
Indices: 61775--61808 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
61765 TTTTTCCTTT
*
61775 TTTTCACCTCTATTTTTC
1 TTTTCACCTATATTTTTC
61793 TTTTCA-CTATATTTTT
1 TTTTCACCTATATTTTT
61809 TCACCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTCACCTATATTTTTC
Found at i:61955 original size:18 final size:18
Alignment explanation
Indices: 61932--62013 Score: 164
Period size: 18 Copynumber: 4.6 Consensus size: 18
61922 ATTTTTCTTC
61932 CTTTTTTTTCACCATTTT
1 CTTTTTTTTCACCATTTT
61950 CTTTTTTTTCACCATTTT
1 CTTTTTTTTCACCATTTT
61968 CTTTTTTTTCACCATTTT
1 CTTTTTTTTCACCATTTT
61986 CTTTTTTTTCACCATTTT
1 CTTTTTTTTCACCATTTT
62004 CTTTTTTTTC
1 CTTTTTTTTC
62014 TTTTCTTCTC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.10, C:0.22, G:0.00, T:0.68
Consensus pattern (18 bp):
CTTTTTTTTCACCATTTT
Found at i:62038 original size:28 final size:28
Alignment explanation
Indices: 62004--62191 Score: 376
Period size: 28 Copynumber: 6.7 Consensus size: 28
61994 TCACCATTTT
62004 CTTTTTTTTCTTTTCTTCTCTTCATTAG
1 CTTTTTTTTCTTTTCTTCTCTTCATTAG
62032 CTTTTTTTTCTTTTCTTCTCTTCATTAG
1 CTTTTTTTTCTTTTCTTCTCTTCATTAG
62060 CTTTTTTTTCTTTTCTTCTCTTCATTAG
1 CTTTTTTTTCTTTTCTTCTCTTCATTAG
62088 CTTTTTTTTCTTTTCTTCTCTTCATTAG
1 CTTTTTTTTCTTTTCTTCTCTTCATTAG
62116 CTTTTTTTTCTTTTCTTCTCTTCATTAG
1 CTTTTTTTTCTTTTCTTCTCTTCATTAG
62144 CTTTTTTTTCTTTTCTTCTCTTCATTAG
1 CTTTTTTTTCTTTTCTTCTCTTCATTAG
62172 CTTTTTTTTCTTTTCTTCTC
1 CTTTTTTTTCTTTTCTTCTC
62192 CTTGGTAAGA
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 160 1.00
ACGTcount: A:0.06, C:0.22, G:0.03, T:0.69
Consensus pattern (28 bp):
CTTTTTTTTCTTTTCTTCTCTTCATTAG
Found at i:62315 original size:21 final size:21
Alignment explanation
Indices: 62289--62338 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
62279 AGACCAGGTA
62289 GGCACCAATGCATGCAGTCCT
1 GGCACCAATGCATGCAGTCCT
62310 GGCACCAATGCATGCAGTCCT
1 GGCACCAATGCATGCAGTCCT
*
62331 GGCCCCAA
1 GGCACCAA
62339 ATCGACACAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (21 bp):
GGCACCAATGCATGCAGTCCT
Done.