Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011931.1 Kokia drynarioides strain JFW-HI SEQ_126929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4513
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.31

Warning! 599 characters in sequence are not A, C, G, or T


Found at i:4008 original size:14 final size:15

Alignment explanation


    Indices: 3989--4017  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       3979 ATAACCTCCT

                           
       3989 AAATATTT-ATTTTA
          1 AAATATTTAATTTTA

                           
       4003 AAATATTTAATTTTA
          1 AAATATTTAATTTTA

       4018 TATATAAAAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    8  0.57
  15    6  0.43

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (15 bp):   
AAATATTTAATTTTA
Done.