Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011934.1 Kokia drynarioides strain JFW-HI SEQ_126932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193694

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1605--6805
208
24.6
212
82
5
5243
28
18
13
39
1.89
1605--6805
425
12.3
418
80
5
5255
28
18
13
39
1.89
14405--14651
122
2.0
123
94
0
433
35
13
21
29
1.92
23170--23656
243
2.0
243
97
0
929
23
31
11
34
1.90
26976--27025
24
2.1
24
92
0
82
40
16
18
26
1.90
29052--29091
21
1.9
21
100
0
80
62
17
0
20
1.33
30235--30300
30
2.1
32
83
10
84
65
0
3
31
1.08
54709--54747
20
1.9
20
84
5
51
0
35
0
64
0.94
56625--56663
15
2.7
14
84
7
51
71
7
5
15
1.26
56622--56663
14
2.9
14
82
6
57
71
7
4
16
1.26
80676--80719
20
2.2
20
100
0
88
38
15
13
31
1.87
97188--97230
21
2.0
21
82
8
52
9
20
9
60
1.55
100355--100385
13
2.4
13
94
0
53
32
16
0
51
1.44
100782--100941
20
8.0
20
78
7
92
40
16
29
13
1.87
100786--100943
40
3.9
39
80
4
140
41
15
29
13
1.86
100795--100940
60
2.4
60
82
2
168
40
15
30
14
1.86
102095--102119
10
2.5
10
100
0
50
48
8
0
44
1.32
109578--109610
4
8.5
4
86
6
50
48
0
3
48
1.17
111418--111486
19
3.6
19
88
0
93
21
27
15
34
1.94
127126--127157
16
2.0
16
100
0
64
37
6
31
25
1.81
131199--131233
17
2.0
18
88
5
54
48
2
5
42
1.41
134039--134072
17
2.0
17
88
0
50
26
14
5
52
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
135527--135559
17
1.9
17
93
0
57
18
12
9
60
1.57
139148--139269
61
2.0
61
96
0
226
32
10
13
42
1.79
145417--145566
39
3.8
39
75
1
147
41
22
14
21
1.89
151590--151643
27
2.0
27
100
0
108
22
22
14
40
1.90
155591--155689
39
2.5
39
85
0
135
54
14
5
26
1.60
158817--158855
13
2.9
14
80
7
53
5
28
0
66
1.12
158877--158913
18
2.0
19
89
5
58
10
16
0
72
1.10
162137--162235
39
2.6
38
88
3
153
51
17
6
25
1.68
170118--170158
17
2.4
18
80
19
52
21
17
9
51
1.74
172897--172949
15
3.5
15
84
0
52
13
30
3
52
1.57
174683--174723
16
2.5
17
81
18
52
68
9
7
14
1.39
180310--180359
19
2.8
17
77
11
55
62
10
12
16
1.55
185403--185487
33
2.6
33
94
0
143
49
21
5
23
1.71
185505--185543
14
2.8
14
88
0
60
33
25
7
33
1.84
188326--188358
17
1.9
17
93
0
57
39
3
0
57
1.14
188381--188424
19
2.3
19
84
4
52
61
6
2
29
1.34
189060--189114
3
18.0
3
83
3
56
58
0
3
38
1.16
190034--190466
29
14.7
29
77
10
339
34
27
4
33
1.77
190034--190466
59
7.4
58
80
7
351
34
27
4
33
1.77
190097--190388
118
2.5
118
87
2
410
34
27
4
33
1.76

Tables:   1

The End!