Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011941.1 Kokia drynarioides strain JFW-HI SEQ_126939, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1617
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37


Found at i:733 original size:14 final size:15

Alignment explanation


    Indices: 708--741  Score: 52
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        698 AATTTATACT

                         * 
        708 TAAATAACACTAATA
          1 TAAATAACACTAAGA

                           
        723 TAAAT-ACACTAAGA
          1 TAAATAACACTAAGA

                 
        737 TAAAT
          1 TAAAT

        742 TAAAATAAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   13  0.72
  15    5  0.28

ACGTcount: A:0.59, C:0.12, G:0.03, T:0.26


Consensus pattern (15 bp):   
TAAATAACACTAAGA
Done.