genome.fa.s11944.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011944.1 Kokia drynarioides strain JFW-HI SEQ_126942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66552

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601--725	23	5.5	22	83	8	117	11	20	24	44	1.84
604--716	45	2.5	46	78	9	108	11	22	24	41	1.87
1606--1650	19	2.2	21	84	7	58	66	0	0	33	0.92
1616--1657	20	2.0	21	86	13	61	61	0	0	38	0.96
2254--2288	6	5.7	6	96	3	61	14	2	0	82	0.77
2409--2475	31	2.2	31	84	7	84	43	8	7	40	1.64
8379--8409	2	15.5	2	93	0	53	51	0	45	3	1.17
23591--23621	16	1.9	16	93	0	53	38	22	3	35	1.71
28030--28181	63	2.4	63	92	0	241	31	5	25	37	1.80
32323--32422	48	2.1	48	84	0	128	37	16	6	41	1.72
32490--32534	23	2.0	23	90	0	72	33	0	13	53	1.40
33332--33518	22	8.0	22	86	4	185	39	24	25	10	1.87
37748--37896	23	6.5	23	77	12	137	10	22	22	44	1.82
39283--39414	22	6.0	22	85	3	158	38	23	23	14	1.91
39374--39463	26	3.6	26	81	8	100	38	22	27	11	1.88
39839--39939	23	4.4	23	81	7	100	40	20	25	12	1.88
40002--40049	26	1.9	24	83	8	60	31	20	0	47	1.50
41841--41886	13	3.4	14	77	17	53	67	0	0	32	0.91
41841--41909	23	3.3	20	77	15	59	65	0	0	34	0.93
41839--41909	15	5.1	13	75	20	63	64	0	0	35	0.94
41922--41963	17	2.4	18	77	22	54	23	9	14	52	1.71
41959--41984	7	3.7	7	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43523--43548	2	13.0	2	100	0	52	50	0	50	0	1.00
48645--48673	3	9.7	3	100	0	58	0	31	0	68	0.89
49460--49493	5	6.8	5	100	0	68	0	0	61	38	0.96

Tables:   1

The End!