genome.fa.s11950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011950.1 Kokia drynarioides strain JFW-HI SEQ_126948, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  522875

Tables:   1   2   

This is table  1  of  2  ( 136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4870--4901	15	2.1	15	94	0	55	78	3	0	18	0.89
7075--7120	24	1.9	24	95	0	83	28	13	6	52	1.65
13214--13268	25	2.3	24	78	15	60	27	3	25	43	1.71
14072--14127	19	3.0	19	75	15	62	62	0	5	32	1.18
14095--14156	29	2.1	29	82	5	72	56	0	6	37	1.25
14139--14220	31	2.6	32	81	11	82	59	4	10	24	1.50
14337--14366	15	2.0	15	93	0	51	56	6	16	20	1.62
20979--21165	37	5.0	37	83	3	187	30	29	21	17	1.97
27730--27768	20	2.0	20	85	10	53	48	28	5	17	1.68
28071--28200	37	3.5	36	75	4	116	30	29	21	18	1.97
30457--30521	18	3.6	19	87	10	100	69	13	15	1	1.27
30473--30517	9	5.1	8	80	19	54	68	13	15	2	1.30
30872--30946	37	2.0	37	97	0	141	34	12	22	30	1.91
37026--37072	23	2.0	23	100	0	94	12	14	17	55	1.70
47118--47153	19	1.9	18	94	5	63	61	11	13	13	1.58
49433--49470	15	2.6	15	87	4	51	65	7	10	15	1.45
65639--65665	2	13.5	2	100	0	54	51	0	0	48	1.00
70148--70177	2	15.0	2	100	0	60	50	0	50	0	1.00
70285--70361	23	3.2	23	76	16	93	44	9	18	28	1.80
70272--70362	23	3.8	24	74	17	82	43	10	18	26	1.83
75822--75858	17	2.1	17	90	5	56	8	5	5	81	0.99
75831--75877	17	2.8	17	83	6	51	6	12	4	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75830--75869	17	2.3	17	86	4	53	5	12	5	77	1.09
87610--87763	77	2.0	77	96	0	281	42	3	6	48	1.45
87631--87752	39	3.2	39	66	19	110	45	2	5	45	1.40
89433--89460	4	7.0	4	100	0	56	25	0	25	50	1.50
89458--89484	4	6.8	4	100	0	54	25	22	25	25	2.00
94725--94759	2	17.5	2	100	0	70	51	48	0	0	1.00
95629--95695	31	2.2	31	94	0	116	38	8	5	46	1.60
112305--112355	15	3.4	16	76	15	54	70	0	27	1	0.98
112300--112357	21	2.8	21	76	7	64	67	0	29	3	1.07
115024--115055	15	2.2	15	94	5	57	18	0	21	59	1.38
118573--118614	17	2.6	16	85	11	50	19	2	2	76	1.01
128285--128327	22	2.0	22	82	13	54	18	13	23	44	1.86
138255--138354	26	3.8	26	78	4	103	24	11	24	41	1.87
149697--149758	18	3.3	18	80	12	79	53	11	27	8	1.64
149696--149748	21	2.5	21	84	0	70	52	9	32	5	1.57
155941--155983	21	2.1	20	83	12	52	4	39	0	55	1.20
155934--155987	18	2.9	19	79	15	60	7	38	0	53	1.29
163547--163627	39	2.1	39	100	0	162	30	23	9	35	1.87
163569--163630	19	3.2	19	63	4	52	29	22	9	38	1.86
169903--169960	21	2.7	22	79	12	68	36	18	8	36	1.82
170679--170816	51	2.7	51	95	0	240	30	23	13	33	1.92
181107--181131	12	2.1	12	100	0	50	36	8	16	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182662--182751	45	2.0	45	100	0	180	33	8	13	44	1.75
203472--203795	51	6.3	51	88	2	443	28	23	15	32	1.95
204602--204626	2	12.5	2	100	0	50	48	0	0	52	1.00
205947--206016	26	2.7	26	72	18	65	25	12	22	38	1.90
206015--206100	26	3.3	26	80	0	73	27	19	20	31	1.97
206035--206107	26	2.8	26	80	0	74	26	21	20	31	1.98
210964--211022	27	2.2	27	81	6	66	35	18	20	25	1.95
216980--217044	6	9.4	7	90	9	75	15	3	0	81	0.81
216985--217036	15	3.8	14	90	9	81	13	3	0	82	0.80
225318--225363	20	2.3	20	92	0	74	47	17	13	21	1.81
232492--232526	2	17.5	2	87	0	52	57	0	0	42	0.99
234819--234847	14	2.1	14	100	0	58	31	27	20	20	1.98
236479--236524	18	2.5	19	92	3	76	15	6	0	78	0.95
236479--236525	19	2.6	18	89	3	67	14	6	0	78	0.93
239507--239576	17	4.1	18	78	14	69	54	17	12	15	1.71
239507--239576	34	2.1	34	81	10	81	54	17	12	15	1.71
239969--240023	15	3.5	16	80	11	69	0	30	5	63	1.17
250562--250615	27	2.0	27	100	0	108	44	14	7	33	1.73
251416--251577	80	2.0	80	81	2	191	35	2	25	35	1.70
252219--252281	28	2.2	29	86	5	85	58	4	6	30	1.43
252205--252301	30	3.3	28	76	13	90	53	5	8	32	1.53
252742--252775	6	5.7	6	100	0	68	85	0	0	14	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258957--259018	31	2.1	30	85	11	83	35	3	8	53	1.47
258844--259272	148	2.9	146	84	9	553	44	2	9	42	1.51
274343--274372	16	1.9	16	93	6	53	60	3	16	20	1.50
286192--286257	21	3.1	21	78	8	71	31	24	12	31	1.92
286521--286558	20	1.9	20	84	10	51	34	23	10	31	1.89
302512--302662	41	3.7	41	80	0	167	38	11	23	26	1.89
305807--305897	30	3.0	30	85	0	119	24	29	20	25	1.99
310231--310302	36	2.0	36	81	10	85	76	5	16	1	1.05
310703--310798	42	2.3	42	88	0	147	19	20	25	34	1.96
310825--311205	42	9.1	42	85	3	453	21	17	23	37	1.94
311556--311603	3	16.0	3	86	0	51	33	8	2	56	1.41
312023--312305	147	1.9	145	85	7	394	44	3	8	43	1.52
318457--318539	26	3.2	26	79	6	96	34	22	21	20	1.96
318553--318642	27	3.3	27	80	0	99	37	21	17	23	1.94
320265--320298	14	2.3	15	90	5	52	50	11	0	38	1.39
322517--322647	28	4.7	28	75	4	122	23	9	24	41	1.85
322522--322647	56	2.2	56	83	5	148	23	10	25	40	1.86
322605--322715	28	4.0	28	72	9	75	24	11	25	38	1.89
327184--327515	165	2.0	165	95	0	601	38	17	23	20	1.93
327667--327697	16	1.9	16	93	0	53	61	0	16	22	1.34
328498--328551	26	2.1	26	89	0	81	27	22	22	27	1.99
331811--331841	16	1.9	16	93	0	53	61	0	16	22	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332643--332694	26	2.0	26	88	0	77	28	23	21	26	1.99
332797--332880	37	2.3	37	87	0	123	22	19	32	26	1.97
347257--347314	19	3.3	19	68	22	54	36	12	6	44	1.68
347370--347513	50	2.8	50	78	8	157	36	14	12	36	1.84
348718--348776	29	1.9	32	86	10	88	64	1	11	22	1.35
348709--348809	27	3.8	27	74	16	86	66	1	11	19	1.33
349735--349782	21	2.4	20	77	16	55	75	0	16	8	1.04
364431--364481	21	2.5	20	78	9	57	15	9	29	45	1.79
365530--365578	25	2.0	25	95	0	89	14	30	22	32	1.93
379472--379510	21	2.0	21	90	10	64	17	5	10	66	1.39
382292--382334	18	2.4	18	85	11	61	69	0	20	9	1.15
397203--397251	22	2.2	22	81	0	62	20	8	10	61	1.53
399984--400064	31	2.7	29	83	11	83	34	4	9	50	1.57
400006--400064	29	2.0	30	90	9	95	33	5	10	50	1.58
400198--400291	31	3.1	31	75	3	84	44	9	7	38	1.65
402929--402973	19	2.3	19	84	3	54	55	6	6	31	1.52
403481--403793	140	2.2	140	96	0	572	33	18	20	27	1.96
404863--405103	41	5.8	41	84	1	275	24	24	11	39	1.88
404858--405057	82	2.4	82	94	1	339	24	25	11	39	1.88
405881--405928	22	2.2	21	77	3	51	33	14	0	52	1.42
412027--412285	41	6.2	41	80	3	259	26	25	10	37	1.88
412027--412239	82	2.6	82	89	1	311	26	25	9	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413083--413130	22	2.2	21	77	3	51	35	14	0	50	1.44
413513--413543	12	2.6	12	94	0	53	19	16	41	22	1.89
414394--414464	31	2.3	31	88	11	103	21	14	21	43	1.87
414958--414992	6	5.8	6	100	0	70	14	34	0	51	1.42
415640--415719	39	2.1	39	97	0	151	25	15	20	40	1.90
421868--421976	53	2.1	53	100	0	218	41	19	5	33	1.74
422698--422887	94	2.0	94	100	0	380	29	14	14	41	1.85
423515--424071	138	4.1	138	89	3	840	45	6	7	40	1.58
423515--424071	277	2.0	272	90	2	882	45	6	7	40	1.58
424710--424949	36	6.7	36	78	3	205	28	15	20	35	1.94

Tables:   1   2