Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011952.1 Kokia drynarioides strain JFW-HI SEQ_126950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 350774
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:4724 original size:21 final size:21
Alignment explanation
Indices: 4662--4739 Score: 59
Period size: 21 Copynumber: 3.8 Consensus size: 21
4652 GTGTAACATC
* * *
4662 AACC-TAAACTTGATACCCTC
1 AACCTTAAACTTGAGACCTTA
* **
4682 AACCTTAAACTTGAAATATTA
1 AACCTTAAACTTGAGACCTTA
*
4703 AAGCTTAAACTTGAGACCTTA
1 AACCTTAAACTTGAGACCTTA
** *
4724 AATTTTAAAATTGAGA
1 AACCTTAAACTTGAGA
4740 GTTTTTAGTA
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
20 4 0.09
21 41 0.91
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (21 bp):
AACCTTAAACTTGAGACCTTA
Found at i:8173 original size:5 final size:5
Alignment explanation
Indices: 8163--8200 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
8153 ATTCATCTAG
8163 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AAT
8201 TATTAGTATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:14728 original size:29 final size:28
Alignment explanation
Indices: 14696--14763 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 28
14686 TAATAGCTCT
* *
14696 TTTTTTTCTTTTCCAT-TTTGTTAAACCAA
1 TTTTTTTCTCTTCCATATTAG-TAAA-CAA
14725 TTTTTTTCTCTTCCATATTAGTAAACAA
1 TTTTTTTCTCTTCCATATTAGTAAACAA
14753 TTTTTTTCTCT
1 TTTTTTTCTCT
14764 CTTTTTTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 14 0.39
29 19 0.53
30 3 0.08
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.59
Consensus pattern (28 bp):
TTTTTTTCTCTTCCATATTAGTAAACAA
Found at i:18877 original size:21 final size:22
Alignment explanation
Indices: 18851--18891 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
18841 TAAATTTTAA
18851 AAATATTAAAATATT-AATATC
1 AAATATTAAAATATTCAATATC
*
18872 AAATATTATAATATTCAATA
1 AAATATTAAAATATTCAATA
18892 ATATTAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAATATTAAAATATTCAATATC
Found at i:18943 original size:26 final size:24
Alignment explanation
Indices: 18911--18975 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 24
18901 ACACATATTT
18911 AATTATTTATATTTTATAATATAATA
1 AATTATTTATATTTTAT--TATAATA
* * *
18937 AGTTATTAATATAATTATTATAATA
1 AATTATTTATAT-TTTATTATAATA
18962 AATTATTTAATATT
1 AATTATTT-ATATT
18976 ACCATTTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
25 13 0.42
26 14 0.45
27 4 0.13
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
AATTATTTATATTTTATTATAATA
Found at i:26073 original size:14 final size:14
Alignment explanation
Indices: 26050--26079 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26040 GGAAAGGAGG
*
26050 AGACGGCAGAGGAA
1 AGACGACAGAGGAA
26064 AGACGACAGAGGAA
1 AGACGACAGAGGAA
26078 AG
1 AG
26080 GGGAAAGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.40, T:0.00
Consensus pattern (14 bp):
AGACGACAGAGGAA
Found at i:29828 original size:28 final size:28
Alignment explanation
Indices: 29775--29860 Score: 120
Period size: 28 Copynumber: 3.1 Consensus size: 28
29765 ACCTAAATAA
* * *
29775 CCATAAAGGCG-CCATTAATAATAGATAG
1 CCATAAAGACGTCCATTCACAA-AGATAG
29803 CCATAAAGACGTCCATTCACAAAGATAG
1 CCATAAAGACGTCCATTCACAAAGATAG
*
29831 CCATAATGACGTCCATTCACAAAGATAG
1 CCATAAAGACGTCCATTCACAAAGATAG
29859 CC
1 CC
29861 GCAAGGCACT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
28 45 0.85
29 8 0.15
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (28 bp):
CCATAAAGACGTCCATTCACAAAGATAG
Found at i:32448 original size:28 final size:28
Alignment explanation
Indices: 32395--32459 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
32385 TTTGGATGTT
*
32395 ACAAAGGCTCACTTGAATAGAGTCAACC
1 ACAAAGGCTCACTTAAATAGAGTCAACC
* * *
32423 ACAAATGCTCACTTTAAAT-GATTCAATC
1 ACAAAGGCTCAC-TTAAATAGAGTCAACC
32451 ACAAAGGCT
1 ACAAAGGCT
32460 TACATTTCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 26 0.84
29 5 0.16
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (28 bp):
ACAAAGGCTCACTTAAATAGAGTCAACC
Found at i:36735 original size:11 final size:11
Alignment explanation
Indices: 36716--36758 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
36706 CTACGTCAAT
36716 AAATTATTTTA
1 AAATTATTTTA
*
36727 AAATGATTTTA
1 AAATTATTTTA
36738 AAATTATTTTA
1 AAATTATTTTA
36749 AAATTATTTT
1 AAATTATTTT
36759 TTTGAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (11 bp):
AAATTATTTTA
Found at i:37450 original size:9 final size:9
Alignment explanation
Indices: 37436--37505 Score: 65
Period size: 9 Copynumber: 7.8 Consensus size: 9
37426 TTTTCAAAAA
37436 AATAATTTT
1 AATAATTTT
37445 AATAATTTT
1 AATAATTTT
37454 AAAATAATTTT
1 --AATAATTTT
37465 AATAATTTT
1 AATAATTTT
**
37474 -AT-ATTAAA
1 AATAATT-TT
*
37482 AATTATTTT
1 AATAATTTT
37491 AATAATTTT
1 AATAATTTT
37500 AA-AATT
1 AATAATT
37506 ATTTGCTGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
7 3 0.06
8 6 0.12
9 30 0.59
10 3 0.06
11 9 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
AATAATTTT
Found at i:37491 original size:46 final size:44
Alignment explanation
Indices: 37409--37509 Score: 143
Period size: 46 Copynumber: 2.3 Consensus size: 44
37399 AAATTGAAAA
37409 TTAAAATTA-TTTAATAATTTTCAAAAAAATAATTTTAATAATT
1 TTAAAATTATTTTAATAATTTTCAAAAAAATAATTTTAATAATT
* *
37452 TTAAAATAATTTTAATAATTTT-ATATTAAAAATTATTTTAATAATT
1 TTAAAATTATTTTAATAATTTTCA-A--AAAAATAATTTTAATAATT
37498 TTAAAATTATTT
1 TTAAAATTATTT
37510 GCTGATGTGG
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
43 9 0.18
44 13 0.25
46 29 0.57
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (44 bp):
TTAAAATTATTTTAATAATTTTCAAAAAAATAATTTTAATAATT
Found at i:37505 original size:20 final size:20
Alignment explanation
Indices: 37409--37509 Score: 87
Period size: 20 Copynumber: 4.6 Consensus size: 20
37399 AAATTGAAAA
37409 TTAAAATTA-TTTAATAATT
1 TTAAAATTATTTTAATAATT
*
37428 TTCAAAAAAATAATTTTAATAATT
1 TT----AAAATTATTTTAATAATT
*
37452 TTAAAATAATTTTAATAATTTTAT
1 TTAAAATTATTTTAATAA---T-T
37476 ATTAAAAATTATTTTAATAATT
1 -TT-AAAATTATTTTAATAATT
37498 TTAAAATTATTT
1 TTAAAATTATTT
37510 GCTGATGTGG
Statistics
Matches: 69, Mismatches: 2, Indels: 21
0.75 0.02 0.23
Matches are distributed among these distances:
19 2 0.03
20 26 0.38
21 2 0.03
22 1 0.01
23 8 0.12
24 13 0.19
25 2 0.03
26 15 0.22
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAAAATTATTTTAATAATT
Found at i:39863 original size:46 final size:46
Alignment explanation
Indices: 39784--39916 Score: 160
Period size: 46 Copynumber: 2.9 Consensus size: 46
39774 TTATCACTTA
* * * * *
39784 TCACATTTTTAGCAT-TTTCATCCCCACATATCACATATTATGATTT
1 TCAC-TTTTTAGCATGTATCATACTCACATATCACATATCACGATTT
39830 TCACTTTTTAGCATGTATCATACTCACATATCACATATCACGATTT
1 TCACTTTTTAGCATGTATCATACTCACATATCACATATCACGATTT
* * * * *
39876 CCACATTTTGGCATGTATTATGCTCACATATCACATATCAC
1 TCACTTTTTAGCATGTATCATACTCACATATCACATATCAC
39917 ATAATTTCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
45 10 0.13
46 66 0.87
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (46 bp):
TCACTTTTTAGCATGTATCATACTCACATATCACATATCACGATTT
Found at i:40087 original size:21 final size:21
Alignment explanation
Indices: 40051--40143 Score: 116
Period size: 21 Copynumber: 4.4 Consensus size: 21
40041 GAGATGAAAT
* *
40051 CACATATTATACATCACATAA
1 CACATATCATAGATCACATAA
* * *
40072 CACTTATCATAAATCACATAG
1 CACATATCATAGATCACATAA
40093 CACATATCATAGATCACATAA
1 CACATATCATAGATCACATAA
40114 CACAT-TCTATAGATCACATAA
1 CACATATC-ATAGATCACATAA
*
40135 CATATATCA
1 CACATATCA
40144 CGATTTTTAG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
20 2 0.03
21 58 0.94
22 2 0.03
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.28
Consensus pattern (21 bp):
CACATATCATAGATCACATAA
Found at i:53811 original size:105 final size:105
Alignment explanation
Indices: 53623--53824 Score: 291
Period size: 105 Copynumber: 1.9 Consensus size: 105
53613 CTTTTTTTTC
* * * * *
53623 TTTTCCTTAAGAATATATTGGCCCTTTTGATGCGAAATGGAATGACAACCCAAGCATCCCATCTC
1 TTTTACTTAAGAATATATTGACCCTTTTAACGCGAAATGGAATGACAACCCAAGCATCCCATCCC
*
53688 GGTTACTCAGCCCGACACACT-CTCAATTTATTATCATCAT
66 GGTTACTCAGCCCAACACACTCCT-AATTTATTATCATCAT
* * *
53728 TTTTACTTAAGAATGTATTGACCCTTTTAACGTGAAATGGAATGATAACCCAAGCA-CTCCATCC
1 TTTTACTTAAGAATATATTGACCCTTTTAACGCGAAATGGAATGACAACCCAAGCATC-CCATCC
53792 CGGTTACTCAGCCCAACACACTCCTAATTTATT
65 CGGTTACTCAGCCCAACACACTCCTAATTTATT
53825 TTTTCCATAA
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
104 1 0.01
105 83 0.97
106 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (105 bp):
TTTTACTTAAGAATATATTGACCCTTTTAACGCGAAATGGAATGACAACCCAAGCATCCCATCCC
GGTTACTCAGCCCAACACACTCCTAATTTATTATCATCAT
Found at i:54602 original size:5 final size:5
Alignment explanation
Indices: 54592--54624 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
54582 AACATGCAAG
54592 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
54625 ACAAAATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:59565 original size:16 final size:16
Alignment explanation
Indices: 59522--59571 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
59512 CTTAAAATAA
59522 AAATATTTTT-ATTTA-
1 AAAT-TTTTTAATTTAT
*
59537 AATTTTTTATAATTTAT
1 AAATTTTT-TAATTTAT
*
59554 AAATTTTTTAATTAAT
1 AAATTTTTTAATTTAT
59570 AA
1 AA
59572 TAATAATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 4 0.14
15 4 0.14
16 14 0.48
17 7 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
AAATTTTTTAATTTAT
Found at i:67355 original size:179 final size:178
Alignment explanation
Indices: 67154--67512 Score: 632
Period size: 180 Copynumber: 2.0 Consensus size: 178
67144 TATTCAACTT
* *
67154 AAAAAAGTTATGATAATTTTTTTTTAAATTGTATAAATGCTGAATATAT-GTTAAAAATTATTTA
1 AAAAAAGTTATGATAATTTTTTTTTAAATTGTATAAATGCTGAATATATACTAAAAAATTATTTA
*
67218 TCATTAATGGGTTAAAGTATAAACTTATCTGTAAATAAATATTGAAATTCGTTACTACACTTTA-
66 TCATTAATGGGTTAAAGTATAAACTTATCTGTAAATAAATATTAAAATTCGTTACTACACTTTAT
67282 TTTTTTTTAATTTTTGTTATTATATTTTGAAATTGAGTAATTTTGTCAATC
131 TTTTTTTTAATTTTTGTTATTATATTTTGAAA-T-A-TAATTTTGTCAATC
67333 AAAAAAGTTATGATAATTTTTTTTTAAATTGTATAAATGCTGAATATATACTAAAAAATTATTTA
1 AAAAAAGTTATGATAATTTTTTTTTAAATTGTATAAATGCTGAATATATACTAAAAAATTATTTA
*
67398 TCATTAATGGGTTAAAGTATAAACTTATCTGTAAATAAATATTAAAATTCGTTATTACACTTTAT
66 TCATTAATGGGTTAAAGTATAAACTTATCTGTAAATAAATATTAAAATTCGTTACTACACTTTAT
*
67463 TTTTTTTTAATTTTTGTTATTATATTTTGAAATATAATTTTGTCATTC
131 TTTTTTTTAATTTTTGTTATTATATTTTGAAATATAATTTTGTCAATC
67511 AA
1 AA
67513 TTATTATGTG
Statistics
Matches: 173, Mismatches: 5, Indels: 5
0.95 0.03 0.03
Matches are distributed among these distances:
178 15 0.09
179 50 0.29
180 76 0.44
181 32 0.18
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.48
Consensus pattern (178 bp):
AAAAAAGTTATGATAATTTTTTTTTAAATTGTATAAATGCTGAATATATACTAAAAAATTATTTA
TCATTAATGGGTTAAAGTATAAACTTATCTGTAAATAAATATTAAAATTCGTTACTACACTTTAT
TTTTTTTTAATTTTTGTTATTATATTTTGAAATATAATTTTGTCAATC
Found at i:68933 original size:23 final size:22
Alignment explanation
Indices: 68907--68956 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
68897 AACAAATAAC
*
68907 AAAAT-GAACAGAACTTAATAAAA
1 AAAATCGAACA-AAATTAA-AAAA
*
68930 AAAATCGAACAAAATTAAAAAG
1 AAAATCGAACAAAATTAAAAAA
68952 AAAAT
1 AAAAT
68957 AAAATAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 8 0.33
23 11 0.46
24 5 0.21
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (22 bp):
AAAATCGAACAAAATTAAAAAA
Found at i:70615 original size:62 final size:62
Alignment explanation
Indices: 70539--70663 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
70529 AATTTTCAAG
70539 TCAAACAATTGACCTAATAGGTAATTGAACTTGTCAGATTAACTATTCCAAAAATAATAATA
1 TCAAACAATTGACCTAATAGGTAATTGAACTTGTCAGATTAACTATTCCAAAAATAATAATA
70601 TCAAACAATTGACCTAATAGGTAATTGAACTTGTCAGATTAACTATTCCAAAAATAATAATA
1 TCAAACAATTGACCTAATAGGTAATTGAACTTGTCAGATTAACTATTCCAAAAATAATAATA
70663 T
1 T
70664 TTTAATAATT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (62 bp):
TCAAACAATTGACCTAATAGGTAATTGAACTTGTCAGATTAACTATTCCAAAAATAATAATA
Found at i:71317 original size:20 final size:20
Alignment explanation
Indices: 71268--71317 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
71258 TCTGAAACTT
71268 CTACCGATACCCAAATCCAA
1 CTACCGATACCCAAATCCAA
* * *
71288 CTGCCAATACCCAAATCTAA
1 CTACCGATACCCAAATCCAA
71308 CTACCGATAC
1 CTACCGATAC
71318 AACTAGGGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.38, G:0.06, T:0.18
Consensus pattern (20 bp):
CTACCGATACCCAAATCCAA
Found at i:72480 original size:158 final size:158
Alignment explanation
Indices: 72183--72579 Score: 643
Period size: 158 Copynumber: 2.5 Consensus size: 158
72173 ACATGTAATC
* * *
72183 ATATGTGCTCACACGAGCTGTGGAGAATCTGCAACCAATG-ATGGACCTCAGCCATTGGTAAGAC
1 ATAT-TGCTCACACGAGCTGTGGAGAATCCGCAACCAATGCA-GGACCTCAGCCATCGATAAGAC
* *
72247 ATCTAAAACCAGCACCCATATAACCTGTAATGCTCACACGAGCTGTGAAATGGGCCTACTCACAC
64 ATCTAAGACCAGCACCCATATAACCTATAATGCTCACACGAGCTGTGAAATGGGCCTACTCACAC
72312 GAGCTATGGGTCGAGATGTTAGGCTACGCG
129 GAGCTATGGGTCGAGATGTTAGGCTACGCG
72342 ATATTGCTCACACGAGCTGTGGAGAATCCGCAACCAATGCAGGACCTCAGCCATCGATAAGACAT
1 ATATTGCTCACACGAGCTGTGGAGAATCCGCAACCAATGCAGGACCTCAGCCATCGATAAGACAT
*
72407 CTAAGACCAGCACCCATATAACCTATAATGCTCACACGAGCTGTGAAATGGGCCTGCTCACACGA
66 CTAAGACCAGCACCCATATAACCTATAATGCTCACACGAGCTGTGAAATGGGCCTACTCACACGA
*
72472 GCTGTGGGTCGAGATGTTAGGCTACGCG
131 GCTATGGGTCGAGATGTTAGGCTACGCG
** * * * *
72500 ATGCTGCTCACACGAGCTGTGGAAAATCCACAACCAATACAGGACCTCAGCCATCGATAGGACAT
1 ATATTGCTCACACGAGCTGTGGAGAATCCGCAACCAATGCAGGACCTCAGCCATCGATAAGACAT
*
72565 CTAAGACCAACACCC
66 CTAAGACCAGCACCC
72580 GGATCTGTAA
Statistics
Matches: 223, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
158 218 0.98
159 5 0.02
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.19
Consensus pattern (158 bp):
ATATTGCTCACACGAGCTGTGGAGAATCCGCAACCAATGCAGGACCTCAGCCATCGATAAGACAT
CTAAGACCAGCACCCATATAACCTATAATGCTCACACGAGCTGTGAAATGGGCCTACTCACACGA
GCTATGGGTCGAGATGTTAGGCTACGCG
Found at i:72732 original size:2 final size:2
Alignment explanation
Indices: 72725--72752 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72715 CATATTTTTC
72725 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72753 GATTTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76575 original size:27 final size:27
Alignment explanation
Indices: 76537--76592 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
76527 TAACATCAAA
76537 GATAGTTCGATGAGATATC-AAACACGG
1 GATAGTTCGATGAGA-ATCTAAACACGG
* *
76564 GATAG-TCTGATGGGACTCTAAACACGG
1 GATAGTTC-GATGAGAATCTAAACACGG
76591 GA
1 GA
76593 ATCCAGAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (27 bp):
GATAGTTCGATGAGAATCTAAACACGG
Found at i:80855 original size:15 final size:16
Alignment explanation
Indices: 80819--80855 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
80809 TCCAAAATTG
*
80819 AATTAAAACAAATGAA
1 AATTAAAAAAAATGAA
80835 AA-TAAAAAAAAT-AA
1 AATTAAAAAAAATGAA
80849 AATTAAA
1 AATTAAA
80856 TCAAGACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 4 0.21
15 13 0.68
16 2 0.11
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AATTAAAAAAAATGAA
Found at i:85325 original size:59 final size:59
Alignment explanation
Indices: 85253--85372 Score: 231
Period size: 59 Copynumber: 2.0 Consensus size: 59
85243 AGGTGAGAAG
85253 TTATGTTAATATGCCATTGTTAGAAAACAATAAGAATCTGAAAAGGATCGACGAATTTA
1 TTATGTTAATATGCCATTGTTAGAAAACAATAAGAATCTGAAAAGGATCGACGAATTTA
*
85312 TTATGTTAATATGCCATTGTTAGCAAACAATAAGAATCTGAAAAGGATCGACGAATTTA
1 TTATGTTAATATGCCATTGTTAGAAAACAATAAGAATCTGAAAAGGATCGACGAATTTA
85371 TT
1 TT
85373 TATTTGGAAG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.32
Consensus pattern (59 bp):
TTATGTTAATATGCCATTGTTAGAAAACAATAAGAATCTGAAAAGGATCGACGAATTTA
Found at i:87437 original size:15 final size:15
Alignment explanation
Indices: 87410--87446 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
87400 CAAGCGTCGT
*
87410 AAAA-AATATCGCTA
1 AAAATAATACCGCTA
87424 AAAATAATACCGCTA
1 AAAATAATACCGCTA
87439 AAAATAAT
1 AAAATAAT
87447 GGTGTTCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.59, C:0.14, G:0.05, T:0.22
Consensus pattern (15 bp):
AAAATAATACCGCTA
Found at i:87527 original size:43 final size:43
Alignment explanation
Indices: 87480--87650 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
87470 AAGCCGTTAT
* * * *
87480 AAAACATGGTCTTTAGCGACGCTGTTAC-CACAAACGCCGCTAA
1 AAAACATGGT-TTTAACGACGCTTTTTCTCACAAACACCGCTAA
* *
87523 AAAACATGGGTTTTAGCGACGC--TTTCTCACAAATACCGCTAA
1 AAAACAT-GGTTTTAACGACGCTTTTTCTCACAAACACCGCTAA
***
87565 AAAACATGGTTTTTAACGGTACTTTTT-TCACAAACACCGCTAA
1 AAAACATGG-TTTTAACGACGCTTTTTCTCACAAACACCGCTAA
* * *
87608 AAAACATGATATTTAACGACG-TTTTTCTTACAAACGCCGCTAA
1 AAAACATGGT-TTTAACGACGCTTTTTCTCACAAACACCGCTAA
87651 TGTTAACAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
41 5 0.05
42 34 0.32
43 62 0.58
44 6 0.06
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
AAAACATGGTTTTAACGACGCTTTTTCTCACAAACACCGCTAA
Found at i:91139 original size:35 final size:36
Alignment explanation
Indices: 91100--91177 Score: 92
Period size: 35 Copynumber: 2.2 Consensus size: 36
91090 ATATAAAACC
* *
91100 AAAATAATT-TAA-TTTTTTAATTTATATAAATTTTA
1 AAAATAATTAGAATTTTTTTAATTTATAT-AAGTTTA
*
91135 AAAAT--TTAGAATTTTTTTAGTTTATATAAGTTTA
1 AAAATAATTAGAATTTTTTTAATTTATATAAGTTTA
91169 AAAATAATT
1 AAAATAATT
91178 GTTAATATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.06
34 13 0.36
35 19 0.53
36 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (36 bp):
AAAATAATTAGAATTTTTTTAATTTATATAAGTTTA
Found at i:91293 original size:41 final size:41
Alignment explanation
Indices: 91248--91361 Score: 129
Period size: 41 Copynumber: 2.8 Consensus size: 41
91238 TGGTGTTTTT
* * ** *
91248 TCATAAGCGCCATTAATGCTTTGATTTTTAGCAGCGCTTTC
1 TCATAAGCGCCACTAATGCTCTGACCTTTAGCAGCGCTTCC
*
91289 TCATAAGCGCCACTAATGCTCTGACCTTTAGCGGCGCTTCC
1 TCATAAGCGCCACTAATGCTCTGACCTTTAGCAGCGCTTCC
** * * *
91330 TCATAAATGCCGCTAATGCTCTAACTTTTAGC
1 TCATAAGCGCCACTAATGCTCTGACCTTTAGC
91362 GGCATTTTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (41 bp):
TCATAAGCGCCACTAATGCTCTGACCTTTAGCAGCGCTTCC
Found at i:96258 original size:22 final size:22
Alignment explanation
Indices: 96217--96260 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
96207 ATGATAAATC
*
96217 AAATAAATTTTATTTCTGTAAA
1 AAATAAATTTAATTTCTGTAAA
96239 AAATAAATTTAATATT-TGTAAA
1 AAATAAATTTAAT-TTCTGTAAA
96261 TTGAAATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (22 bp):
AAATAAATTTAATTTCTGTAAA
Found at i:98888 original size:41 final size:41
Alignment explanation
Indices: 98828--98909 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
98818 AAACTAAACT
* *
98828 AAGGGATGTGTAAACCTAACTGCTAAATGCCCTATTTATAG
1 AAGGGATGTGTAAAACTAACTGCTAAAGGCCCTATTTATAG
98869 AAGGGATGTGTAAAACTAACTGCTAAAGGCCCTATTTATAG
1 AAGGGATGTGTAAAACTAACTGCTAAAGGCCCTATTTATAG
98910 CCTTGGATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (41 bp):
AAGGGATGTGTAAAACTAACTGCTAAAGGCCCTATTTATAG
Found at i:100029 original size:218 final size:220
Alignment explanation
Indices: 99650--100087 Score: 774
Period size: 218 Copynumber: 2.0 Consensus size: 220
99640 GTGGCTTAGA
* *
99650 TTTTGTAAATTTACAAAAAGAAAGCAAATTTAAAAATTTCTTTGAGAAACCAAGCTACATTTTTT
1 TTTTGTAAATTTACAAAAAGAAAGCAAATTTAAAAATTTCTTTGAGAAACCAAGCTACATTTATG
* * *
99715 ATGCCTCACTCTTATGCACTCATTTTCATAAAAAAGGGCATGATAGGCAAGTTTGTTTTTTAAGG
66 ATGCCTCACTCTTATGCACTCATTTTCATAAAAAAGGGCATGATAGGAAAGTTTCTTCTTTAAGG
*
99780 AAGCTCACATCTAGAAGCAAATTCACTAAGAGTGTGTAGATCCCAAAAGGTTTAAACACACTGCA
131 AAGCTCACATCTAGAAGCAAACTCACTAAGAGTGTGTAGATCCCAAAAGGTTTAAACACACTGCA
99845 AAATGAGGAAGCTTTAAA-AAAAGG
196 AAATGAGGAAGCTTTAAAGAAAAGG
*
99869 TTTTGTAAATTTACAAAAAGAAAGCAAATTT-AAAATTTCTTTGGGAAACCAAGCTACATTTATG
1 TTTTGTAAATTTACAAAAAGAAAGCAAATTTAAAAATTTCTTTGAGAAACCAAGCTACATTTATG
99933 ATGCCTCACTCTTATGCACTCA-TTTCATAAAAAAGGGGCATGATAGGAAAGTTTCTTCTTTAAG
66 ATGCCTCACTCTTATGCACTCATTTTCATAAAAAA-GGGCATGATAGGAAAGTTTCTTCTTTAAG
*
99997 GAAGCTCACATCTAGAAGCAAACTCACTAAGAGTGTGTAGATCCCAAAAGGTTTAAACACACTGT
130 GAAGCTCACATCTAGAAGCAAACTCACTAAGAGTGTGTAGATCCCAAAAGGTTTAAACACACTGC
100062 AAAATGAGGAAGCTTTAAAGAAAAGG
195 AAAATGAGGAAGCTTTAAAGAAAAGG
100088 ATTCCTAAGG
Statistics
Matches: 209, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
217 12 0.06
218 160 0.77
219 37 0.18
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (220 bp):
TTTTGTAAATTTACAAAAAGAAAGCAAATTTAAAAATTTCTTTGAGAAACCAAGCTACATTTATG
ATGCCTCACTCTTATGCACTCATTTTCATAAAAAAGGGCATGATAGGAAAGTTTCTTCTTTAAGG
AAGCTCACATCTAGAAGCAAACTCACTAAGAGTGTGTAGATCCCAAAAGGTTTAAACACACTGCA
AAATGAGGAAGCTTTAAAGAAAAGG
Found at i:103254 original size:26 final size:26
Alignment explanation
Indices: 103223--103285 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
103213 TCCTGCAGCA
103223 ACAATTCTGGGCATGCA-CATGCAGTG
1 ACAATTCTGGGCAT-CATCATGCAGTG
* * * * *
103249 ATAATTTTTGACATCATCATGGAGTG
1 ACAATTCTGGGCATCATCATGCAGTG
103275 ACAATTCTGGG
1 ACAATTCTGGG
103286 AGTAATTTTG
Statistics
Matches: 27, Mismatches: 9, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (26 bp):
ACAATTCTGGGCATCATCATGCAGTG
Found at i:103301 original size:38 final size:38
Alignment explanation
Indices: 103250--103332 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 38
103240 CATGCAGTGA
* *
103250 TAATTTTTGACATCATCATGGAGTGACAATTCTGGGAG
1 TAATTTTGGACATCATCATGCAGTGACAATTCTGGGAG
* * * *
103288 TAATTTTGGACATCGTTATTCAGTGACAATTCTGGGTG
1 TAATTTTGGACATCATCATGCAGTGACAATTCTGGGAG
*
103326 CAATTTT
1 TAATTTT
103333 AAATAGACTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.39
Consensus pattern (38 bp):
TAATTTTGGACATCATCATGCAGTGACAATTCTGGGAG
Found at i:109194 original size:48 final size:46
Alignment explanation
Indices: 109135--109231 Score: 133
Period size: 46 Copynumber: 2.1 Consensus size: 46
109125 GCACATTAGC
*
109135 AAATGATTTTAAAATT-ATTAAAATTATTTTTTAAAATATAAAAATTTT
1 AAATGATTTTAAAATTAATTAAAA--ATTTTTT-AAATATAAAAATATT
* *
109183 AAATTATTTTAAAATTAATTTAAAATTTTTTAAATATAAAAATATT
1 AAATGATTTTAAAATTAATTAAAAATTTTTTAAATATAAAAATATT
109229 AAA
1 AAA
109232 ATCATCATCA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
46 17 0.38
47 7 0.16
48 15 0.33
49 6 0.13
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (46 bp):
AAATGATTTTAAAATTAATTAAAAATTTTTTAAATATAAAAATATT
Found at i:109206 original size:21 final size:21
Alignment explanation
Indices: 109135--109216 Score: 60
Period size: 22 Copynumber: 3.6 Consensus size: 21
109125 GCACATTAGC
* *
109135 AAATGATTTTAAAATT-ATTA
1 AAATTATTTTAAAATTAATTT
109155 AAATTATTTTTTAAAATATAAAAATTTT
1 AAATTA--TTTTAAAAT-T---AA-TTT
109183 AAATTATTTTAAAATTAATTT
1 AAATTATTTTAAAATTAATTT
109204 AAAATT-TTTTAAA
1 -AAATTATTTTAAA
109217 TATAAAAATA
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
20 5 0.10
21 10 0.20
22 16 0.31
23 1 0.02
25 1 0.02
26 9 0.18
27 1 0.02
28 8 0.16
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
AAATTATTTTAAAATTAATTT
Found at i:112081 original size:50 final size:52
Alignment explanation
Indices: 111995--112132 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 52
111985 TGCATGACTT
111995 GATTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGATAG
1 GATTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGATAG
* * **
112047 GATTT-ATGATGCATA-TTTAACTAACATGTA-AGTTACTTAATGCATG-TCTT
1 GATTTAATGATGCAAACTTTAACTAACATG-AGAGTTACATAATGCATGAT-AG
*
112097 TATTT-ATGATGCAAAC-TTAACTAATCATGAGAGTTA
1 GATTTAATGATGCAAACTTTAACTAA-CATGAGAGTTA
112133 ATGGATGTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 11
0.82 0.07 0.12
Matches are distributed among these distances:
49 1 0.01
50 50 0.67
51 19 0.25
52 5 0.07
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (52 bp):
GATTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGATAG
Found at i:112347 original size:17 final size:17
Alignment explanation
Indices: 112327--112359 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
112317 AAAACACTTA
112327 TTAAACTAAAA-TAAAAC
1 TTAAA-TAAAATTAAAAC
112344 TTAAATAAAATTAAAA
1 TTAAATAAAATTAAAA
112360 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAATAAAATTAAAAC
Found at i:115819 original size:70 final size:70
Alignment explanation
Indices: 115736--115938 Score: 336
Period size: 70 Copynumber: 2.9 Consensus size: 70
115726 AGCAGCGGGG
* *
115736 TTTTATATATCAAAGTTAATTGTTAACTTAGTGATAATTTCGAAAGGGAAAAATGGTTGTTCCAA
1 TTTTATATATCAAAGTTAATTGTTAACTTACTGATAATTTCGAAAGGGAACAATGGTTGTTCCAA
115801 TGGGA
66 TGGGA
* *
115806 TTTTATATATCAAAGTTAATTGTTAACTTACTGATAATTTCAAAAGGGAACAATGGTTGTTCCAG
1 TTTTATATATCAAAGTTAATTGTTAACTTACTGATAATTTCGAAAGGGAACAATGGTTGTTCCAA
*
115871 TGGGG
66 TGGGA
*
115876 TTTTATATATCCAAA-TTAATTGTTAACTTACTGATAATTTCGAAAGAGAACAATGGTTGTTCC
1 TTTTATATAT-CAAAGTTAATTGTTAACTTACTGATAATTTCGAAAGGGAACAATGGTTGTTCC
115939 GGTAAGAATA
Statistics
Matches: 125, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
70 121 0.97
71 4 0.03
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (70 bp):
TTTTATATATCAAAGTTAATTGTTAACTTACTGATAATTTCGAAAGGGAACAATGGTTGTTCCAA
TGGGA
Found at i:123155 original size:12 final size:12
Alignment explanation
Indices: 123130--123171 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
123120 TAGTAAAATA
123130 AAATAAA-A-AT
1 AAATAAATAGAT
123140 AAATAAATAGAT
1 AAATAAATAGAT
*
123152 AAATAAACAGAT
1 AAATAAATAGAT
123164 AAATAAAT
1 AAATAAAT
123172 GAAATGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 7 0.25
11 1 0.04
12 20 0.71
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (12 bp):
AAATAAATAGAT
Found at i:125062 original size:16 final size:17
Alignment explanation
Indices: 125035--125067 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
125025 AATTTACATG
125035 ATTTTAATTATTTATTT
1 ATTTTAATTATTTATTT
125052 ATTTT-ATTATTTATTT
1 ATTTTAATTATTTATTT
125068 GTTACTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTTAATTATTTATTT
Found at i:129079 original size:9 final size:9
Alignment explanation
Indices: 129065--129107 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
129055 CCTTTCATTT
129065 AAAAAAATA
1 AAAAAAATA
129074 AAAAAAATA
1 AAAAAAATA
129083 AAAAAAA-A
1 AAAAAAATA
* *
129091 TAATAAATA
1 AAAAAAATA
129100 AAACAAAA
1 AAA-AAAA
129108 ATAAGAATCC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
8 6 0.21
9 19 0.68
10 3 0.11
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAAATA
Found at i:129095 original size:22 final size:21
Alignment explanation
Indices: 129065--129108 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
129055 CCTTTCATTT
*
129065 AAAAAAATAAAAAAAATAAAA
1 AAAAAAATAAAAAAAACAAAA
*
129086 AAAAATAATAAATAAAACAAAA
1 AAAAA-AATAAAAAAAACAAAA
129108 A
1 A
129109 TAAGAATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.11
Consensus pattern (21 bp):
AAAAAAATAAAAAAAACAAAA
Found at i:129108 original size:18 final size:17
Alignment explanation
Indices: 129064--129111 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
129054 GCCTTTCATT
*
129064 TAAAAAAATAA-AAAAAA
1 TAAAAAAA-AATAATAAA
129081 TAAAAAAAAATAATAAA
1 TAAAAAAAAATAATAAA
129098 TAAAACAAAAATAA
1 TAAAA-AAAAATAA
129112 GAATCCTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 2 0.07
17 18 0.64
18 8 0.29
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (17 bp):
TAAAAAAAAATAATAAA
Found at i:145391 original size:25 final size:25
Alignment explanation
Indices: 145363--145413 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
145353 GTTGATATTC
*
145363 TTGACTAATGTTTGCTATCATTCAT
1 TTGACCAATGTTTGCTATCATTCAT
145388 TTGACCAATGTTTGCTATCATTCAT
1 TTGACCAATGTTTGCTATCATTCAT
145413 T
1 T
145414 CTCATTTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (25 bp):
TTGACCAATGTTTGCTATCATTCAT
Found at i:146136 original size:49 final size:49
Alignment explanation
Indices: 146080--146723 Score: 366
Period size: 49 Copynumber: 13.2 Consensus size: 49
146070 AACATCGAAC
* **
146080 CTAACACCCTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGGTGGAT
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * * * * * * *
146129 CTTACACCATAAAACTGAAGAGGGACAGGTTGAAGTCATAATGGCGGAC
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
** * **** * *
146178 CTAACACCTTAAAACCAAAGAGGGAAATATTGAAGTTACAACAACGAAT
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * * * * **
146227 CTTACACCTTAAAACTGAAGAGGGATAGGTTGAAACCGCAATGATAGAT
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * * * ** ** * *** *
146276 TTTACATCTTAAAATTGAAGAGGGATAGGCTGAAGCAATAATGGTAGAC
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * **
146325 CTAACACCTTAAAA-TCGAAGAGGGATAGATTGAAGTCGTAATGGTGGAT
1 CTAACACCTTAAAACT-GAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * *
146374 CTAACACCCTAAAACTGAAGAGAGAAAGATTAAAGCCGTAAAGACGGAT
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * * * * * * * *
146423 CTTACATCTTAAAATTGAAGAGAGATAGGTTAAACCCGTAACGACAGAC
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * *
146472 CTAACACCTTAAAA-TCGAAGAGGGATAGATTGAAGTCATAACGAC-TAT
1 CTAACACCTTAAAACT-GAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * *
146520 CTAACACCCTAAAA-TCGAAGAGGGAAAGATTGAAGCCCTAACAATGGAT
1 CTAACACCTTAAAACT-GAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * * * *
146569 CTTACACCTTAAAACTGAAGAGGGATAGGTTGAAGTCGTAACAACGGAT
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * *** * **
146618 CTAACA-CTCTAAAA-TCGAAAAGGGAAATATTGAAATTGCAATAACGGAT
1 CTAACACCT-TAAAACT-GAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
* * ** ** * *
146667 CTTATACCCCAAAACCAAAGAGGGAAAGATTGAAGTCGTAAC-AGCGAAT
1 CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGA-CGGAT
146716 CTAACACC
1 CTAACACC
146724 CTATGAAAAA
Statistics
Matches: 461, Mismatches: 124, Indels: 20
0.76 0.20 0.03
Matches are distributed among these distances:
48 46 0.10
49 412 0.89
50 3 0.01
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.20
Consensus pattern (49 bp):
CTAACACCTTAAAACTGAAGAGGGAAAGATTGAAGCCGTAACGACGGAT
Found at i:146317 original size:147 final size:146
Alignment explanation
Indices: 146047--146603 Score: 573
Period size: 147 Copynumber: 3.8 Consensus size: 146
146037 TCCTAGAGTT
* * * * *
146047 GAAGAGAGATAGGTTGAAGTCGCAACATCGAACCTAACACCCTAAAACTGAAGAGGGAAAGATTG
1 GAAGAGGGATAGATTGAAGTCACAACAACGAATCTAACACCCTAAAACTGAAGAGGGAAAGATTG
* * * * * *
146112 AAGCCGTAACGGTGGATCTTACACCATAAAACTGAAGAGGGACAGGTTGAAGTCATAATGGCGGA
66 AAACCGCAACGATGGATCTTACACCTTAAAACTGAAGAGGGATAGGTTGAAG-CATAATGGCAGA
*
146177 CCTAACACCTTAAAACC
130 CCTAACACCTTAAAATC
* * * * * * * *
146194 AAAGAGGGAAATATTGAAGTTACAACAACGAATCTTACACCTTAAAACTGAAGAGGGATAGGTTG
1 GAAGAGGGATAGATTGAAGTCACAACAACGAATCTAACACCCTAAAACTGAAGAGGGAAAGATTG
* * * * * * *
146259 AAACCGCAATGATAGATTTTACATCTTAAAATTGAAGAGGGATAGGCTGAAGCAATAATGGTAGA
66 AAACCGCAACGATGGATCTTACACCTTAAAACTGAAGAGGGATAGGTTGAAGC-ATAATGGCAGA
146324 CCTAACACCTTAAAATC
130 CCTAACACCTTAAAATC
** **** * *
146341 GAAGAGGGATAGATTGAAGTCGTAATGGTGGATCTAACACCCTAAAACTGAAGAGAGAAAGATT-
1 GAAGAGGGATAGATTGAAGTCACAACAACGAATCTAACACCCTAAAACTGAAGAGGGAAAGATTG
* * * * * * * * * * *
146405 AAAGCCGTAAAGACGGATCTTACATCTTAAAATTGAAGAGAGATAGGTTAAACCCGTAACGACAG
66 AAA-CCGCAACGATGGATCTTACACCTTAAAACTGAAGAGGGATAGGTTGAA-GCATAATGGCAG
146470 ACCTAACACCTTAAAATC
129 ACCTAACACCTTAAAATC
* * *
146488 GAAGAGGGATAGATTGAAGTCATAACGAC-TATCTAACACCCTAAAA-TCGAAGAGGGAAAGATT
1 GAAGAGGGATAGATTGAAGTCACAACAACGAATCTAACACCCTAAAACT-GAAGAGGGAAAGATT
* *
146551 GAAGCC-CTAACAATGGATCTTACACCTTAAAACTGAAGAGGGATAGGTTGAAG
65 GAAACCGC-AACGATGGATCTTACACCTTAAAACTGAAGAGGGATAGGTTGAAG
146604 TCGTAACAAC
Statistics
Matches: 332, Mismatches: 72, Indels: 14
0.79 0.17 0.03
Matches are distributed among these distances:
145 1 0.00
146 73 0.22
147 257 0.77
148 1 0.00
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.20
Consensus pattern (146 bp):
GAAGAGGGATAGATTGAAGTCACAACAACGAATCTAACACCCTAAAACTGAAGAGGGAAAGATTG
AAACCGCAACGATGGATCTTACACCTTAAAACTGAAGAGGGATAGGTTGAAGCATAATGGCAGAC
CTAACACCTTAAAATC
Found at i:148421 original size:12 final size:12
Alignment explanation
Indices: 148378--148430 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
148368 TTATGGTGAA
148378 TTTATTTTTTAT
1 TTTATTTTTTAT
*
148390 GTTGCATTTTTTA-
1 -TT-TATTTTTTAT
**
148403 TGCATTTTTTAT
1 TTTATTTTTTAT
148415 TTTATTTTTTAT
1 TTTATTTTTTAT
148427 TTTA
1 TTTA
148431 ATTATATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 2 0.06
14 8 0.24
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.74
Consensus pattern (12 bp):
TTTATTTTTTAT
Found at i:148547 original size:11 final size:11
Alignment explanation
Indices: 148531--148582 Score: 52
Period size: 11 Copynumber: 4.4 Consensus size: 11
148521 ATTTACTAAC
148531 ATTTAATTTTT
1 ATTTAATTTTT
148542 ATTTAATTTATT
1 ATTTAATTT-TT
148554 AGTATTAATTATTT
1 A-T-TTAATT-TTT
148568 ATTT-ATGTTTT
1 ATTTAAT-TTTT
148579 ATTT
1 ATTT
148583 TATGATATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
11 18 0.50
12 6 0.17
13 2 0.06
14 9 0.25
15 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTT
Found at i:148604 original size:16 final size:16
Alignment explanation
Indices: 148565--148607 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
148555 GTATTAATTA
* * *
148565 TTTATTTATGTTTTAT
1 TTTATTGATATTTAAT
148581 TTTA-TGATATTTAAT
1 TTTATTGATATTTAAT
148596 TTTATTGATATT
1 TTTATTGATATT
148608 CTATTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (16 bp):
TTTATTGATATTTAAT
Found at i:148613 original size:16 final size:14
Alignment explanation
Indices: 148563--148613 Score: 54
Period size: 16 Copynumber: 3.6 Consensus size: 14
148553 TAGTATTAAT
148563 TATTTA-TTTATG-
1 TATTTATTTTATGA
148575 T-TTTATTTTATGA
1 TATTTATTTTATGA
148588 TATTTAATTTTATTGA
1 TATTT-ATTTTA-TGA
148604 TATTCTATTT
1 TATT-TATTT
148614 ATTTGCATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 4 0.12
12 7 0.21
13 1 0.03
14 3 0.09
15 6 0.18
16 11 0.33
17 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (14 bp):
TATTTATTTTATGA
Found at i:150844 original size:55 final size:55
Alignment explanation
Indices: 150784--150942 Score: 210
Period size: 55 Copynumber: 2.9 Consensus size: 55
150774 TTATCCAGAC
* * *
150784 AGTTGTTAGATGCGACGACAAGTCTGGGCGCAATTCTGGATATGCTCATGCAGTG
1 AGTTGTCAGATGCGACGACAATTCTGGGCGCAATTCTGGATATGCTCATGCAATG
* * *
150839 AGTTGTCAGATGCGGCGACAATTCTAGGCGCAATTCTAGATATGCTCATGCAATG
1 AGTTGTCAGATGCGACGACAATTCTGGGCGCAATTCTGGATATGCTCATGCAATG
* * ** * *
150894 AGCTGTCAAAAACGACGACAATTCTGGGTGCAATTCTGGATAGGCTCAT
1 AGTTGTCAGATGCGACGACAATTCTGGGCGCAATTCTGGATATGCTCAT
150943 TCAGCGACAT
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (55 bp):
AGTTGTCAGATGCGACGACAATTCTGGGCGCAATTCTGGATATGCTCATGCAATG
Found at i:154349 original size:56 final size:56
Alignment explanation
Indices: 154260--154369 Score: 175
Period size: 56 Copynumber: 2.0 Consensus size: 56
154250 AGAGTTTGAT
*
154260 GAGTTTCTAAAGGAATTTGGGATTGTCTCACAACATACAACTCCCGGTACTCCATA
1 GAGTTTCTAAAGGAATGTGGGATTGTCTCACAACATACAACTCCCGGTACTCCATA
* * * *
154316 GAGTTTCTAAAGGAATGTGGGATTGTCTTACAACTTACACCTCTCGGTACTCCA
1 GAGTTTCTAAAGGAATGTGGGATTGTCTCACAACATACAACTCCCGGTACTCCA
154370 CAATGAAACA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (56 bp):
GAGTTTCTAAAGGAATGTGGGATTGTCTCACAACATACAACTCCCGGTACTCCATA
Found at i:178051 original size:19 final size:19
Alignment explanation
Indices: 178027--178073 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
178017 TTGATTTTTC
*
178027 AAAGAAATAATGTAA-AAT
1 AAAGAAATAATGCAATAAT
178045 AAAAGAAGA-AATGCAATAAT
1 -AAAGAA-ATAATGCAATAAT
178065 AAAGAAATA
1 AAAGAAATA
178074 GGGTCCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 1 0.04
19 19 0.79
20 4 0.17
ACGTcount: A:0.68, C:0.02, G:0.13, T:0.17
Consensus pattern (19 bp):
AAAGAAATAATGCAATAAT
Found at i:182210 original size:21 final size:21
Alignment explanation
Indices: 182186--182226 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
182176 TAAATCGTTG
182186 TTAAAAC-ATATTAAACATGCA
1 TTAAAACAAT-TTAAACATGCA
*
182207 TTAAGACAATTTAAACATGC
1 TTAAAACAATTTAAACATGC
182227 CAATAAGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (21 bp):
TTAAAACAATTTAAACATGCA
Found at i:182512 original size:50 final size:50
Alignment explanation
Indices: 182433--182570 Score: 170
Period size: 50 Copynumber: 2.7 Consensus size: 50
182423 TGCATAACTT
182433 GATTTAATGATGCAAACTTTAACTAACATGTGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGTGAGTTACATAATGCATG-TCAG
* * * *
182485 GATTTATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATGTGAGTTACATAATGCATGTCAG
* * *
182535 TATTTATGATGCAAACTTAACTAATCATGAGAGTTA
1 GATTTATGATGCAAATTTAACTAA-CATGTGAGTTA
182571 ATGGATGTCA
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.01
50 51 0.68
51 18 0.24
52 5 0.07
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGTGAGTTACATAATGCATGTCAG
Found at i:184940 original size:101 final size:101
Alignment explanation
Indices: 184765--184968 Score: 408
Period size: 101 Copynumber: 2.0 Consensus size: 101
184755 AATGAGTCAT
184765 AAGTGACAGTACAATAATACGAACTGCATTGACAATAAGGTCCTAGTGCGTCGATAATGGCACCT
1 AAGTGACAGTACAATAATACGAACTGCATTGACAATAAGGTCCTAGTGCGTCGATAATGGCACCT
184830 GATAATTCTGCAAAAACAAGAAGTAAAACAAACTTG
66 GATAATTCTGCAAAAACAAGAAGTAAAACAAACTTG
184866 AAGTGACAGTACAATAATACGAACTGCATTGACAATAAGGTCCTAGTGCGTCGATAATGGCACCT
1 AAGTGACAGTACAATAATACGAACTGCATTGACAATAAGGTCCTAGTGCGTCGATAATGGCACCT
184931 GATAATTCTGCAAAAACAAGAAGTAAAACAAACTTG
66 GATAATTCTGCAAAAACAAGAAGTAAAACAAACTTG
184967 AA
1 AA
184969 CAATAACAAA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 103 1.00
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.22
Consensus pattern (101 bp):
AAGTGACAGTACAATAATACGAACTGCATTGACAATAAGGTCCTAGTGCGTCGATAATGGCACCT
GATAATTCTGCAAAAACAAGAAGTAAAACAAACTTG
Found at i:194499 original size:21 final size:20
Alignment explanation
Indices: 194475--194520 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
194465 AAAAAGTATC
194475 TACAAAAAGAATCTCTAAGAT
1 TACAAAAAG-ATCTCTAAGAT
**
194496 TACAATCAGATCTCTAAGAT
1 TACAAAAAGATCTCTAAGAT
*
194516 CACAA
1 TACAA
194521 GGATCATATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.24
Consensus pattern (20 bp):
TACAAAAAGATCTCTAAGAT
Found at i:219279 original size:10 final size:9
Alignment explanation
Indices: 219260--219284 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
219250 AGAATATGAG
219260 AAAAATAAA
1 AAAAATAAA
219269 AAAAATAAA
1 AAAAATAAA
219278 AAAAATA
1 AAAAATA
219285 TTCTGTGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAATAAA
Found at i:230170 original size:50 final size:51
Alignment explanation
Indices: 230058--230178 Score: 131
Period size: 50 Copynumber: 2.4 Consensus size: 51
230048 GATTTAATGA
*
230058 TGCAAACTTTAACTAACATGGGAGTTACATAATGCATGATAGGATTTATAAT
1 TGCAAAC-TTAACTAACATGGAAGTTACATAATGCATGATAGGATTTATAAT
* * * * **
230110 T-CATATTTAACTAACATGTAAGTTACTTAATGCATG-TCATTATTTAT-AT
1 TGCAAACTTAACTAACATGGAAGTTACATAATGCATGAT-AGGATTTATAAT
230159 TGCAAACTTAACTAATCATG
1 TGCAAACTTAACTAA-CATG
230179 AGAGTTAATG
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
49 4 0.07
50 45 0.79
51 7 0.12
52 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (51 bp):
TGCAAACTTAACTAACATGGAAGTTACATAATGCATGATAGGATTTATAAT
Found at i:230411 original size:17 final size:17
Alignment explanation
Indices: 230380--230412 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
230370 CAAACACTTA
230380 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
230397 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
230413 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:231202 original size:84 final size:84
Alignment explanation
Indices: 231061--231215 Score: 274
Period size: 84 Copynumber: 1.8 Consensus size: 84
231051 CATCAGCCTA
*
231061 AAAGAGGAGTTAATGAATACACTGAAGCTTACTATCCTTAAACTACTAGGACTATTCCTTAACCG
1 AAAGAGGAGTTAATGAATACACTGAAGCTTACTATCCCTAAACTACTAGGACTATTCCTTAACCG
231126 CTCCTCTTGTGTCTGCACC
66 CTCCTCTTGTGTCTGCACC
* *
231145 AAAGAGGAGTTAATGAATACACTGAATCTTACTATCCCTAGACTACTAGGACTATTCCTTAACCG
1 AAAGAGGAGTTAATGAATACACTGAAGCTTACTATCCCTAAACTACTAGGACTATTCCTTAACCG
*
231210 TTCCTC
66 CTCCTC
231216 GTCAGGAGTC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (84 bp):
AAAGAGGAGTTAATGAATACACTGAAGCTTACTATCCCTAAACTACTAGGACTATTCCTTAACCG
CTCCTCTTGTGTCTGCACC
Found at i:244988 original size:16 final size:16
Alignment explanation
Indices: 244969--245001 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
244959 TATTCTTTAT
244969 TCATTTGTCACAACAA
1 TCATTTGTCACAACAA
*
244985 TCATTTGTCATAACAA
1 TCATTTGTCACAACAA
245001 T
1 T
245002 TCTTTTCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (16 bp):
TCATTTGTCACAACAA
Found at i:251582 original size:17 final size:17
Alignment explanation
Indices: 251539--251592 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
251529 TGATATATGG
**
251539 AAATGCAATGACAATGT
1 AAATGCAATGACAATAA
*
251556 AGATGCAATGACAATAA
1 AAATGCAATGACAATAA
*
251573 AAATGTAATGACAAATAA
1 AAATGCAATGAC-AATAA
251591 AA
1 AA
251593 TGTGGTGACA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 24 0.77
18 7 0.23
ACGTcount: A:0.56, C:0.09, G:0.15, T:0.20
Consensus pattern (17 bp):
AAATGCAATGACAATAA
Found at i:256010 original size:20 final size:21
Alignment explanation
Indices: 255969--256010 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
255959 TAAGCTTTAT
*
255969 TAAGTTAGAAAATGTAATAAA
1 TAAGTTAGAAAATCTAATAAA
255990 TAAGTTA-AAAATACTAA-AAA
1 TAAGTTAGAAAAT-CTAATAAA
256010 T
1 T
256011 GTGTGCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.29
Consensus pattern (21 bp):
TAAGTTAGAAAATCTAATAAA
Found at i:262789 original size:17 final size:17
Alignment explanation
Indices: 262753--262791 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
262743 ATTGTCATTA
*
262753 CATTTTAATTGTCCATG
1 CATTTTAATTGTCCACG
* *
262770 CATTTTATTTGTCGACG
1 CATTTTAATTGTCCACG
262787 CATTT
1 CATTT
262792 GCATTGTAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (17 bp):
CATTTTAATTGTCCACG
Found at i:264219 original size:50 final size:52
Alignment explanation
Indices: 264124--264279 Score: 137
Period size: 50 Copynumber: 3.1 Consensus size: 52
264114 TGACATCCAT
* **
264124 TAACTCTCATGATTAGTT-AAGCT-TGCATCA-TAAAT-AATGAAATGCATTAAG
1 TAACTCACATG-TTAGTTAAAG-TATGCATCATTAAATCAA-GTCATGCATTAAG
* * * *
264175 TAACTTACATGTTAGTTAAA-TATGCATCA-TAAATCCTA-TCATGCAATATG
1 TAACTCACATGTTAGTTAAAGTATGCATCATTAAAT-CAAGTCATGCATTAAG
* * *
264225 TAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATCAAGTCATGCATTTAG
1 TAACTCACATGTTAGTTAAAGTATGCATCATTAAATCAAGTCATGCATTAAG
264277 TAA
1 TAA
264280 TCCATTAGTT
Statistics
Matches: 84, Mismatches: 14, Indels: 13
0.76 0.13 0.12
Matches are distributed among these distances:
49 1 0.01
50 44 0.52
51 21 0.25
52 18 0.21
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (52 bp):
TAACTCACATGTTAGTTAAAGTATGCATCATTAAATCAAGTCATGCATTAAG
Found at i:266623 original size:21 final size:21
Alignment explanation
Indices: 266599--266640 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
266589 AAAAGCGTGC
266599 AAGAGAGAAGAAA-AAGAAAGT
1 AAGAGAGAA-AAAGAAGAAAGT
**
266620 AAGATTGAAAAAGAAGAAAGT
1 AAGAGAGAAAAAGAAGAAAGT
266641 GCTCAAGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.64, C:0.00, G:0.26, T:0.10
Consensus pattern (21 bp):
AAGAGAGAAAAAGAAGAAAGT
Found at i:268253 original size:50 final size:52
Alignment explanation
Indices: 268199--268313 Score: 128
Period size: 50 Copynumber: 2.2 Consensus size: 52
268189 AAATAATGAA
* * * *
268199 ATGCATTAAGTAACTTACATGTTAGTTAAA-TATGCATCAT-AAATCCTA-TC
1 ATGCATTAAGTAACTCACACGTTAGTTAAAGTATACATCATCAAAT-CAAGTC
* * *
268249 ATGCATTACGTAACTCCCACGTTAGTTAAAGTCTACATCATCAAATCAAGTC
1 ATGCATTAAGTAACTCACACGTTAGTTAAAGTATACATCATCAAATCAAGTC
*
268301 ATGCATTTAGTAA
1 ATGCATTAAGTAA
268314 TTCATTAGTT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
50 26 0.49
51 10 0.19
52 17 0.32
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (52 bp):
ATGCATTAAGTAACTCACACGTTAGTTAAAGTATACATCATCAAATCAAGTC
Found at i:270368 original size:17 final size:17
Alignment explanation
Indices: 270348--270380 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
270338 TTTAAGGACT
270348 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
270365 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
270381 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:272912 original size:41 final size:41
Alignment explanation
Indices: 272847--273019 Score: 215
Period size: 41 Copynumber: 4.2 Consensus size: 41
272837 AGTCGTAGAC
* * * *
272847 CTTCCTCTTAA-ACAATCTTATGCTC-TACCGAGTCATAAGT
1 CTTCCT-TTAATATAATCTCATGCTCATCCCGAGACATAAGT
* **
272887 CTTCCTTTAAATATAATCTCATGCTCATCCCGAGTCACGAGT
1 CTTCCTTT-AATATAATCTCATGCTCATCCCGAGACATAAGT
272929 CTTCCTTTAATATAATCTCATGCTCATCCCGAGACATAAGT
1 CTTCCTTTAATATAATCTCATGCTCATCCCGAGACATAAGT
* * * *
272970 CTTCCTTTAATATAATCTCATACTCATTCCAAGACATGAGT
1 CTTCCTTTAATATAATCTCATGCTCATCCCGAGACATAAGT
273011 CTTCCTTTA
1 CTTCCTTTA
273020 TACTTAATGT
Statistics
Matches: 118, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.02
40 8 0.07
41 88 0.75
42 20 0.17
ACGTcount: A:0.28, C:0.27, G:0.09, T:0.36
Consensus pattern (41 bp):
CTTCCTTTAATATAATCTCATGCTCATCCCGAGACATAAGT
Found at i:274695 original size:17 final size:17
Alignment explanation
Indices: 274675--274707 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
274665 TTTAAGGACT
274675 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
274692 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
274708 TAACTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:277131 original size:24 final size:24
Alignment explanation
Indices: 277102--277175 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
277092 ATGAAAATGA
277102 AAGAAAAATAAAGGAGATTGAGAG
1 AAGAAAAATAAAGGAGATTGAGAG
* *
277126 AAG-AAAA-AAA-GAAAAT--GA-
1 AAGAAAAATAAAGGAGATTGAGAG
277144 AAGAAAAATAAAGGAGATTGAGAG
1 AAGAAAAATAAAGGAGATTGAGAG
277168 AAGAAAAA
1 AAGAAAAA
277176 AAGAAATGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
18 3 0.08
19 6 0.15
20 3 0.08
21 8 0.20
22 3 0.08
23 6 0.15
24 11 0.28
ACGTcount: A:0.66, C:0.00, G:0.24, T:0.09
Consensus pattern (24 bp):
AAGAAAAATAAAGGAGATTGAGAG
Found at i:277191 original size:41 final size:42
Alignment explanation
Indices: 277094--277200 Score: 180
Period size: 42 Copynumber: 2.5 Consensus size: 42
277084 TTTTGTGAAT
277094 GAAAATGAAAGAAAAATAAAGGAGATTGAGAGAAGAAAAAAA
1 GAAAATGAAAGAAAAATAAAGGAGATTGAGAGAAGAAAAAAA
277136 GAAAATGAAAGAAAAATAAAGGAGATTGAGAGAAGAAAAAAA
1 GAAAATGAAAGAAAAATAAAGGAGATTGAGAGAAGAAAAAAA
**
277178 G-AAATGAGGGAAAAATATAAGGA
1 GAAAATGAAAGAAAAATA-AAGGA
277201 AATAAAAAGA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
41 14 0.23
42 48 0.77
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.10
Consensus pattern (42 bp):
GAAAATGAAAGAAAAATAAAGGAGATTGAGAGAAGAAAAAAA
Found at i:277328 original size:21 final size:21
Alignment explanation
Indices: 277304--277345 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
277294 AAAAGAGTGC
277304 AAGAGAGAAGAAA-AAGAAAGT
1 AAGAGAGAA-AAAGAAGAAAGT
**
277325 AAGATTGAAAAAGAAGAAAGT
1 AAGAGAGAAAAAGAAGAAAGT
277346 GATCAAGCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.64, C:0.00, G:0.26, T:0.10
Consensus pattern (21 bp):
AAGAGAGAAAAAGAAGAAAGT
Found at i:278658 original size:17 final size:17
Alignment explanation
Indices: 278638--278670 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
278628 TTTAAGGACT
278638 TTTTAGTTTTA-TTTAAG
1 TTTTA-TTTTAGTTTAAG
278655 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
278671 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:278915 original size:50 final size:51
Alignment explanation
Indices: 278846--278986 Score: 155
Period size: 50 Copynumber: 2.8 Consensus size: 51
278836 AATCTCTAGA
* * *
278846 TTAGTT-AAGTTTTCATCATAAATAATGACATGCATTAAGTAACTTACATG
1 TTAGTTAAAGTATGCATCATAAATAATGACATGCATTAAGTAACTCACATG
* * *
278896 TTAGTTAAA-TATGCATCATAAATCAT-ATCATGCATTATGTAACTCCCATG
1 TTAGTTAAAGTATGCATCATAAATAATGA-CATGCATTAAGTAACTCACATG
* *
278946 TTAGTTAAAGTTTGCATCATTAAATCAA-GTCATGCATTAAG
1 TTAGTTAAAGTATGCATCA-TAAAT-AATGACATGCATTAAG
278987 AAATTCATTA
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
49 1 0.01
50 48 0.64
51 10 0.13
52 15 0.20
53 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (51 bp):
TTAGTTAAAGTATGCATCATAAATAATGACATGCATTAAGTAACTCACATG
Found at i:280829 original size:37 final size:38
Alignment explanation
Indices: 280751--280830 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
280741 TAATGTCGCT
* **
280751 ACATGAGCACTTCTAGATTGCACCCAAAAACTATCGTC
1 ACATGAGCACTTCTAAATTGCACCCAAAAACTATCACC
280789 ACATGAGCACTT-TCAAATTGCACCC-AAAACTATCACC
1 ACATGAGCACTTCT-AAATTGCACCCAAAAACTATCACC
280826 ACATG
1 ACATG
280831 TATTTCCAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 16 0.42
38 22 0.58
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.23
Consensus pattern (38 bp):
ACATGAGCACTTCTAAATTGCACCCAAAAACTATCACC
Found at i:309439 original size:21 final size:21
Alignment explanation
Indices: 309414--309465 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
309404 ATGAGTATAA
309414 CTACCGATACCTATCTTCCAT
1 CTACCGATACCTATCTTCCAT
309435 CTACCGATACCTATCTTCCAT
1 CTACCGATACCTATCTTCCAT
309456 CTACCGATAC
1 CTACCGATAC
309466 AAATCAAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.38, G:0.06, T:0.31
Consensus pattern (21 bp):
CTACCGATACCTATCTTCCAT
Found at i:309538 original size:21 final size:22
Alignment explanation
Indices: 309495--309538 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
309485 CCTCTCTCCT
* * *
309495 ACCCTGTGTTTCTACCGATACA
1 ACCCTGTGGTTCTACCAAAACA
309517 ACCCTG-GGTTCTACCAAAACA
1 ACCCTGTGGTTCTACCAAAACA
309538 A
1 A
309539 GTATGCATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.25
Consensus pattern (22 bp):
ACCCTGTGGTTCTACCAAAACA
Found at i:310025 original size:25 final size:25
Alignment explanation
Indices: 309997--310072 Score: 91
Period size: 25 Copynumber: 3.1 Consensus size: 25
309987 TGAGTCTTTC
*
309997 AAAAATTTAGCTCATACGAGCCCAG
1 AAAAAATTAGCTCATACGAGCCCAG
*
310022 AAAAAATTAGCTCATATGAGCCCA-
1 AAAAAATTAGCTCATACGAGCCCAG
* * * *
310046 TATAAGTTAGCTCTTACGAGCCCAG
1 AAAAAATTAGCTCATACGAGCCCAG
310071 AA
1 AA
310073 TGTTAGCTCC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 19 0.45
25 23 0.55
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.22
Consensus pattern (25 bp):
AAAAAATTAGCTCATACGAGCCCAG
Found at i:310192 original size:24 final size:24
Alignment explanation
Indices: 310003--310192 Score: 204
Period size: 24 Copynumber: 7.9 Consensus size: 24
309993 TTTCAAAAAT
* * *
310003 TTAGCTCATACGAGCCCAGAAAAAA
1 TTAGCTCTTACGAGCCCAG-AATAG
* * *
310028 TTAGCTCATATGAGCCCA-TATAAG
1 TTAGCTCTTACGAGCCCAGAAT-AG
310052 TTAGCTCTTACGAGCCCAGAAT-G
1 TTAGCTCTTACGAGCCCAGAATAG
* * *
310075 TTAGCTCCTACGAGCCTAGAATGG
1 TTAGCTCTTACGAGCCCAGAATAG
* *
310099 TTAGCTCTTACGAGCCTAGAATGG
1 TTAGCTCTTACGAGCCCAGAATAG
* *
310123 TTAGCTCTTACGAGCGCAGAATGG
1 TTAGCTCTTACGAGCCCAGAATAG
**
310147 TTAGCTCTTATTAGCCCAGAATAG
1 TTAGCTCTTACGAGCCCAGAATAG
*
310171 TTAGCTCTTATGAGCCCAGAAT
1 TTAGCTCTTACGAGCCCAGAAT
310193 CAAAATAATG
Statistics
Matches: 145, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
23 22 0.15
24 104 0.72
25 19 0.13
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
TTAGCTCTTACGAGCCCAGAATAG
Found at i:310234 original size:27 final size:27
Alignment explanation
Indices: 310190--310304 Score: 167
Period size: 27 Copynumber: 4.3 Consensus size: 27
310180 ATGAGCCCAG
* * * *
310190 AATCAAAATAATGTTCTTTCGAGCCAG
1 AATCAGAATAACGCTCTTTCGAGCCAA
* * *
310217 AATCTGAAAAACGCTCTTTCGAGCCAG
1 AATCAGAATAACGCTCTTTCGAGCCAA
310244 AATCAGAATAACGCTCTTTCGAGCCAA
1 AATCAGAATAACGCTCTTTCGAGCCAA
310271 AATCAGAATAACGCTCTTTCGAGCCAA
1 AATCAGAATAACGCTCTTTCGAGCCAA
310298 AATCAGA
1 AATCAGA
310305 TTACTCCTCA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (27 bp):
AATCAGAATAACGCTCTTTCGAGCCAA
Found at i:310739 original size:15 final size:15
Alignment explanation
Indices: 310712--310753 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
310702 TCACCTCAAG
*
310712 TCCTTATAA-ATTTAT
1 TCCTT-TAACATTTAA
310727 TCCTTTAACATTTTAA
1 TCCTTTAACA-TTTAA
310743 TCCTTTAACAT
1 TCCTTTAACAT
310754 AAAAATTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 3 0.12
15 7 0.29
16 14 0.58
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (15 bp):
TCCTTTAACATTTAA
Found at i:310746 original size:16 final size:16
Alignment explanation
Indices: 310722--310753 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
310712 TCCTTATAAA
*
310722 TTTATTCCTTTAACAT
1 TTTAATCCTTTAACAT
310738 TTTAATCCTTTAACAT
1 TTTAATCCTTTAACAT
310754 AAAAATTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.19, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAATCCTTTAACAT
Found at i:317634 original size:3 final size:3
Alignment explanation
Indices: 317626--317688 Score: 108
Period size: 3 Copynumber: 20.7 Consensus size: 3
317616 AATTCAGCAT
*
317626 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
317674 TTA TTA TTA TATA TT
1 TTA TTA TTA T-TA TT
317689 TATGCGACTG
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:318792 original size:21 final size:22
Alignment explanation
Indices: 318747--318794 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
318737 ATTTCCTCTT
318747 TTCC-TCTTTCTTCCTTTTTCAC
1 TTCCTTCTTTCTTCCTTTTT-AC
318769 TTCCTTCTCTTCTT-CTTTTT-C
1 TTCCTTCT-TTCTTCCTTTTTAC
318790 TTCCT
1 TTCCT
318795 CAATACCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.25
22 4 0.17
23 9 0.38
24 5 0.21
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.62
Consensus pattern (22 bp):
TTCCTTCTTTCTTCCTTTTTAC
Found at i:322782 original size:61 final size:61
Alignment explanation
Indices: 322702--322984 Score: 384
Period size: 61 Copynumber: 4.8 Consensus size: 61
322692 AAAAAGGTCT
* *
322702 GATGACTTTATGTTATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAATGTTC
1 GATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAATGTTC
*
322763 GATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAA-GGTC
1 GATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAATGTTC
* * * * * *
322823 TAATGACTTTGTGTTATCGTGAGTATTCAATGAAATGAATCCTATTACGGATTAAAAGGTTC
1 -GATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAATGTTC
* *
322885 GATGAC-TT-TGT-AT--T-A-TATTAAATGAAATGAATCCTATTACGGATTAAAATGTCC
1 GATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAATGTTC
**
322939 GATGACTTTGTGTCATTGTGAGTATTAAATGAAATGAATCCTATTA
1 GATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTA
322985 TTGATTATAG
Statistics
Matches: 200, Mismatches: 13, Indels: 18
0.87 0.06 0.08
Matches are distributed among these distances:
54 42 0.21
55 3 0.01
56 4 0.02
57 2 0.01
58 2 0.01
59 4 0.02
60 6 0.03
61 134 0.67
62 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (61 bp):
GATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAATGTTC
Found at i:322922 original size:54 final size:61
Alignment explanation
Indices: 322900--323023 Score: 178
Period size: 60 Copynumber: 2.0 Consensus size: 61
322890 CTTTGTATTA
*
322900 TATTAAATGAAATGAATCCTATTACGGATTAAAATGTCCGATGACTTTGTGTCATTGTGAG
1 TATTAAATGAAATGAATCCTATTACGGATTAAAAGGTCCGATGACTTTGTGTCATTGTGAG
** * * * *
322961 TATTAAATGAAATGAATCCTATTATTGATT-ATAGGTCCGATGACTCTATGTCATCGTGAG
1 TATTAAATGAAATGAATCCTATTACGGATTAAAAGGTCCGATGACTTTGTGTCATTGTGAG
323021 TAT
1 TAT
323024 CAAACGCGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
60 28 0.50
61 28 0.50
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (61 bp):
TATTAAATGAAATGAATCCTATTACGGATTAAAAGGTCCGATGACTTTGTGTCATTGTGAG
Found at i:322962 original size:115 final size:121
Alignment explanation
Indices: 322693--322984 Score: 434
Period size: 115 Copynumber: 2.5 Consensus size: 121
322683 CGTAAATGCA
* *
322693 AAAAGGTCTGATGACTTTATGTTATCATGAGTATTAAATGAAATGAATCCTATTACGAATTAAAA
1 AAAAGGTCTGATGACTTTGTGTTATCGTGAGTATTAAATGAAATGAATCCTATTACGAATTAAAA
*
322758 TGTTCGATGACTTTGTGTCATCATGAGTATTAAATGAAATGAATCCTATTACGAATT
66 GGTTCGATGACTTTGTGTCAT-ATGAGTATTAAATGAAATGAATCCTATTACGAATT
* * *
322815 AAAAGGTCTAATGACTTTGTGTTATCGTGAGTATTCAATGAAATGAATCCTATTACGGATTAAAA
1 AAAAGGTCTGATGACTTTGTGTTATCGTGAGTATTAAATGAAATGAATCCTATTACGAATTAAAA
*
322880 GGTTCGATGAC-TT-TGT-AT-T-A-TATTAAATGAAATGAATCCTATTACGGATT
66 GGTTCGATGACTTTGTGTCATATGAGTATTAAATGAAATGAATCCTATTACGAATT
* * * *
322930 AAAATGTCCGATGACTTTGTGTCATTGTGAGTATTAAATGAAATGAATCCTATTA
1 AAAAGGTCTGATGACTTTGTGTTATCGTGAGTATTAAATGAAATGAATCCTATTA
322985 TTGATTATAG
Statistics
Matches: 157, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
115 78 0.50
116 1 0.01
117 1 0.01
119 2 0.01
120 3 0.02
121 2 0.01
122 70 0.45
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (121 bp):
AAAAGGTCTGATGACTTTGTGTTATCGTGAGTATTAAATGAAATGAATCCTATTACGAATTAAAA
GGTTCGATGACTTTGTGTCATATGAGTATTAAATGAAATGAATCCTATTACGAATT
Found at i:323702 original size:21 final size:21
Alignment explanation
Indices: 323678--323735 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
323668 TAGAAGTAAG
* * *
323678 ACTTGTTTTGGTAGAAGAGTC
1 ACTTGTATCGGTAGAACAGTC
*
323699 ACTTGTATCGGTAGAACTGTC
1 ACTTGTATCGGTAGAACAGTC
*
323720 ACTTGTATCGCTAGAA
1 ACTTGTATCGGTAGAA
323736 GTTTGCACTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (21 bp):
ACTTGTATCGGTAGAACAGTC
Found at i:328607 original size:29 final size:29
Alignment explanation
Indices: 328575--328631 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
328565 ATCAACGGGA
*
328575 AATCTAAAATCTTCAAATATAATATATAG
1 AATCTAAAACCTTCAAATATAATATATAG
*
328604 AATCTAAAACCTTCAAATATAGTATATA
1 AATCTAAAACCTTCAAATATAATATATA
328632 TGGTATAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (29 bp):
AATCTAAAACCTTCAAATATAATATATAG
Found at i:335457 original size:19 final size:20
Alignment explanation
Indices: 335430--335467 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
335420 AAAACCTGAA
335430 AACAAAAAACTC-TCAAAAC
1 AACAAAAAACTCTTCAAAAC
* *
335449 AACACAAAATTCTTCAAAA
1 AACAAAAAACTCTTCAAAA
335468 GTATTACGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.61, C:0.24, G:0.00, T:0.16
Consensus pattern (20 bp):
AACAAAAAACTCTTCAAAAC
Found at i:335487 original size:16 final size:16
Alignment explanation
Indices: 335466--335503 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
335456 AATTCTTCAA
*
335466 AAGTATTACGAGTTAT
1 AAGTATTACAAGTTAT
*
335482 AAGTATTATAAGTTAT
1 AAGTATTACAAGTTAT
335498 AA-TATT
1 AAGTATT
335504 TTAATGGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (16 bp):
AAGTATTACAAGTTAT
Found at i:342398 original size:22 final size:22
Alignment explanation
Indices: 342364--342478 Score: 108
Period size: 22 Copynumber: 5.1 Consensus size: 22
342354 ACGCTAGCGC
*
342364 GCTTACTGATCAGCATTGTGTGT
1 GCTT-CTGATCAGCACTGTGTGT
342387 GCTTCT-ATTCAGCACTGTGTGT
1 GCTTCTGA-TCAGCACTGTGTGT
342409 GCTTCTGATCAGCACTGTGTGT
1 GCTTCTGATCAGCACTGTGTGT
* * *
342431 GCTCTCTGTTTAGCAC-GTTTCGT
1 GCT-TCTGATCAGCACTGTGT-GT
* * *
342454 ACCCTCTGATCAGCACTTTGTGT
1 -GCTTCTGATCAGCACTGTGTGT
342477 GC
1 GC
342479 CCTCAGTTAT
Statistics
Matches: 75, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
21 1 0.01
22 42 0.56
23 29 0.39
24 3 0.04
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.38
Consensus pattern (22 bp):
GCTTCTGATCAGCACTGTGTGT
Found at i:342432 original size:44 final size:46
Alignment explanation
Indices: 342364--342478 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 46
342354 ACGCTAGCGC
*
342364 GCTTACTGATCAGCATTGTGTGTGCT-TCTATTCAGCACTGTGT-GT-
1 GCTT-CTGATCAGCACTGTGTGTGCTCTCTATTCAGCAC-GTGTCGTA
* * *
342409 GCTTCTGATCAGCACTGTGTGTGCTCTCTGTTTAGCACGTTTCGTA
1 GCTTCTGATCAGCACTGTGTGTGCTCTCTATTCAGCACGTGTCGTA
* * *
342455 CCCTCTGATCAGCACTTTGTGTGC
1 GCTTCTGATCAGCACTGTGTGTGC
342479 CCTCAGTTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 23 0.38
45 16 0.27
46 21 0.35
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.38
Consensus pattern (46 bp):
GCTTCTGATCAGCACTGTGTGTGCTCTCTATTCAGCACGTGTCGTA
Found at i:342445 original size:23 final size:23
Alignment explanation
Indices: 342369--342531 Score: 129
Period size: 23 Copynumber: 7.1 Consensus size: 23
342359 AGCGCGCTTA
* *
342369 CTGATCAGCATTGTGTGTG-CTT
1 CTGATCAGCACTGTGTGTGCCCT
*
342391 CT-ATTCAGCACTGTGTGTG-CTT
1 CTGA-TCAGCACTGTGTGTGCCCT
*
342413 CTGATCAGCACTGTGTGTGCTCT
1 CTGATCAGCACTGTGTGTGCCCT
* * * *
342436 CTGTTTAGCAC-GTTTCGTACCCT
1 CTGATCAGCACTGTGT-GTGCCCT
*
342459 CTGATCAGCACTTTGTGTGCCCT
1 CTGATCAGCACTGTGTGTGCCCT
* *
342482 CAGTTATTAGCACT-TCGTGTGCCCT
1 C--TGATCAGCACTGT-GTGTGCCCT
* *
342507 CTGATTAGCACTTTGTGTGCCCT
1 CTGATCAGCACTGTGTGTGCCCT
342530 CT
1 CT
342532 ATTACTCATC
Statistics
Matches: 116, Mismatches: 16, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
21 1 0.01
22 39 0.34
23 53 0.46
24 4 0.03
25 19 0.16
ACGTcount: A:0.13, C:0.26, G:0.22, T:0.38
Consensus pattern (23 bp):
CTGATCAGCACTGTGTGTGCCCT
Found at i:342494 original size:25 final size:23
Alignment explanation
Indices: 342397--342535 Score: 131
Period size: 23 Copynumber: 6.0 Consensus size: 23
342387 GCTTCTATTC
* * *
342397 AGCACTGTGTGTG-CTTCTGATC
1 AGCACTTTGTGTGCCCTCTGATT
* * *
342419 AGCACTGTGTGTGCTCTCTGTTT
1 AGCACTTTGTGTGCCCTCTGATT
* * *
342442 AGCACGTTT-CGTACCCTCTGATC
1 AGCAC-TTTGTGTGCCCTCTGATT
*
342465 AGCACTTTGTGTGCCCTCAGTTATT
1 AGCACTTTGTGTGCCCTC--TGATT
*
342490 AGCACTTCGTGTGCCCTCTGATT
1 AGCACTTTGTGTGCCCTCTGATT
342513 AGCACTTTGTGTGCCCTCT-ATT
1 AGCACTTTGTGTGCCCTCTGATT
342535 A
1 A
342536 CTCATCACTT
Statistics
Matches: 95, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
22 20 0.21
23 53 0.56
24 2 0.02
25 20 0.21
ACGTcount: A:0.14, C:0.27, G:0.22, T:0.37
Consensus pattern (23 bp):
AGCACTTTGTGTGCCCTCTGATT
Found at i:342507 original size:48 final size:46
Alignment explanation
Indices: 342412--342530 Score: 143
Period size: 48 Copynumber: 2.5 Consensus size: 46
342402 TGTGTGTGCT
* * *
342412 TCTGATCAGCACTGTGTGTGCTCTCTGTTTAGCACGTTTCGTACCC
1 TCTGATCAGCACTTTGTGTGCCCTCAGTTTAGCACGTTTCGTACCC
*
342458 TCTGATCAGCACTTTGTGTGCCCTCAGTTATTAGCAC--TTCGTGTGCCC
1 TCTGATCAGCACTTTGTGTGCCCTCAG-T-TTAGCACGTTTC--GTACCC
*
342506 TCTGATTAGCACTTTGTGTGCCCTC
1 TCTGATCAGCACTTTGTGTGCCCTC
342531 TATTACTCAT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
46 27 0.42
47 1 0.02
48 36 0.56
ACGTcount: A:0.13, C:0.29, G:0.21, T:0.37
Consensus pattern (46 bp):
TCTGATCAGCACTTTGTGTGCCCTCAGTTTAGCACGTTTCGTACCC
Found at i:342551 original size:48 final size:48
Alignment explanation
Indices: 342412--342557 Score: 142
Period size: 48 Copynumber: 3.1 Consensus size: 48
342402 TGTGTGTGCT
* * * *
342412 TCTGATCAGCACTGTGTGTGCTCTCTGTT-T-AGCACGTT--TCGTACCC
1 TCTGATCAGCACTTTGTGTGCCCTCAGTTATCAGCAC-TTCAT-GTGCCC
* *
342458 TCTGATCAGCACTTTGTGTGCCCTCAGTTATTAGCACTTCGTGTGCCC
1 TCTGATCAGCACTTTGTGTGCCCTCAGTTATCAGCACTTCATGTGCCC
* *
342506 TCTGATTAGCACTTTGTGTGCCCTCTA-TTACTCATCACTT-ATGTGCCC
1 TCTGATCAGCACTTTGTGTGCCCTC-AGTTA-TCAGCACTTCATGTGCCC
342554 TCTG
1 TCTG
342558 TTAAGTACTT
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
46 26 0.30
47 3 0.03
48 48 0.56
49 9 0.10
ACGTcount: A:0.14, C:0.29, G:0.19, T:0.38
Consensus pattern (48 bp):
TCTGATCAGCACTTTGTGTGCCCTCAGTTATCAGCACTTCATGTGCCC
Found at i:347554 original size:21 final size:21
Alignment explanation
Indices: 347530--347579 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
347520 TTAGATTAAT
*
347530 CCACAACAGAGCC-AGATGCAA
1 CCACAACAGAACCGA-ATGCAA
* *
347551 CCACACCAGAATCGAATGCAA
1 CCACAACAGAACCGAATGCAA
347572 CCACAACA
1 CCACAACA
347580 ATATGCAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.44, C:0.36, G:0.14, T:0.06
Consensus pattern (21 bp):
CCACAACAGAACCGAATGCAA
Found at i:350488 original size:906 final size:906
Alignment explanation
Indices: 348933--350774 Score: 3114
Period size: 906 Copynumber: 2.0 Consensus size: 906
348923 TCCTACTGTA
*
348933 GTATTTCTTGGCGACAATAGTACTCTCCCAGTTATTGTCTTCGCAAAACTAGATGCAACTCAAGA
1 GTATTTCTTGGCGACAATAGTACTCTCCCAGTTATTGTCTCCGCAAAACTAGATGCAACTCAAGA
* * *
348998 AGAAAAATTAATCCATATTGTTAAGCAGCATAAACAAGATATTGCTTGGAGTATTGCCAATATTC
66 AGAAAAATTAATCCATATTCTTAAGCAGCATAAACAAGATACTGCTTGGAGTATTACCAATATTC
349063 AAGGCATTAGTCCATCTTTTTGCATGCACAAAATTAAGTTGAAAGAAGAAGGCAAGCAATCGATT
131 AAGGCATTAGTCCATCTTTTTGCATGCACAAAATTAAGTTGAAAGAAGAAGGCAAGCAATCGATT
*
349128 CAGCAACAACGAAGATTGAATGAGAAAATGAAGGAAATTGTTAAAAAGGAAATTATAAAGTGGTT
196 CAGCAACAACGAAGATTGAATGAGAAAATGAAGGAAATTGTTAAAAAGGAAATTATAAAGTGGCT
* *
349193 TGACTCTGGAATTGATAAAGCTTTATGCGATTTGGGACCTAGCATCAACCTTATACCACTCTCTA
261 TGACTCTGGAATTGATAAAGCTTTATGCGATTTGGGACCTAGCATAAACCTTATACCACTATCTA
* *
349258 CCTTCAGAAAGTTAGGAGTTGGTAATATGAACCCCACTGCAGTGACATTGCAATTAGCAGATCGA
326 CCTTCAGAAAGTTAGGAATTGGTAATATGAACCCCACTGCAGTGAAATTGCAATTAGCAGATCGA
* *
349323 TCCTTGGCTCAACTTGAAGGGTAGATCAAAGACATTTTAGTTCGTGCGAAAAAAGTAATTTTCCC
391 TCCTTGGCTCAACTTGAAGGGCAGATCAAAGACATTTTAGTTCATGCGAAAAAAGTAATTTTCCC
* *
349388 AGTTGATTTTATTAAACTTAACTACAAGGCAAACAAAGAGGTTCCCATAATCTTAGGATGACCAT
456 AGTTGATTTTATTAAACTTAACTACAAGGCAAACAAAGAGGTTCCCATAATCATAGGACGACCAT
* * * * *
349453 TTTTAGCTACCGGACGCACTCTCATCGATGTTTATAAAGGTGAATTGACCATGCGACATGATGGT
521 TTTTAGCTACCGGACACACTCTCATCGATGTTTACAAAGGCGAATTGACCATGCGACAAGATGAT
* *
349518 GAGCATGTTACCTTCAGTGTTTTTGAATTTTTTCCATGCAAGGAGAAAGAACAATGTCACACTGT
586 GAGAATGTTACCTTCAGTGTTTTTGAATTTTTTCCATGCAAGGAGAAAGAAAAATGTCACACTGT
349583 TGATGTGCTAGAATGTTTAATTGAGGAAGAATTCAATGACCAAAGCACATTACTTTTTGAAGAAT
651 TGATGTGCTAGAATGTTTAATTGAGGAAGAATTCAATGACCAAAGCACATTACTTTTTGAAGAAT
* * *
349648 TTGCGGTGGCATCTGATGATGAATTTTTAGCTGACTGCGACAGCATGGTTGAAGCTAATAACATT
716 TTACGATGACATCTGATGATGAATTTTTAGCTGACTGCGACAGCATGGTTGAAGCTAATAACATT
* *
349713 AACCTAAAGCA-AGGATGGTAGATTGAATCTTTAGATTTAGCCAACAGAACCACTCTAGTTTTTA
781 AACCTAAAGCACA-AATGGTAGATTGAATCTTTAGATTTAGCCAACAGAACCACTCCAGTTTTTA
*
349777 AGCCATCTATTGAAGAAGTTCCTACTGTAGAATTGGAGCCACTGCCTGCTCATCTGAAATAT
845 AGCCATCTATTGAAGAAGTTCCAACTGTAGAATTGGAGCCACTGCCTGCTCATCTGAAATAT
* *
349839 GTATTTCTTAGCGATAATAGTACTCTCCCAGTTATTGTCTCCGCAAAACTAGATGCAACTCAAGA
1 GTATTTCTTGGCGACAATAGTACTCTCCCAGTTATTGTCTCCGCAAAACTAGATGCAACTCAAGA
* *
349904 AGAAAAATTAATCCATATTCTTAAGCAGCATAAACAAGCTACTGCTTGGAGTATTACCGATATTC
66 AGAAAAATTAATCCATATTCTTAAGCAGCATAAACAAGATACTGCTTGGAGTATTACCAATATTC
* *
349969 GAGGCATTAGTCCATCTTTTTGCATGCACAAAATTAAGTTGAAAGAAGAAGGTAAGCAATCGATT
131 AAGGCATTAGTCCATCTTTTTGCATGCACAAAATTAAGTTGAAAGAAGAAGGCAAGCAATCGATT
* * * *
350034 GAGCAACAACGAAGATTGAATGAGAAAATGAAGTAAGTTGTTTAAAAGGAAATTATAAAGTGGCT
196 CAGCAACAACGAAGATTGAATGAGAAAATGAAGGAAATTGTTAAAAAGGAAATTATAAAGTGGCT
*
350099 TGACTCTGGAATTGGTAAAGCTTTATGCGATTTGGGACCTAGCATAAACCTTATACCACTATCTA
261 TGACTCTGGAATTGATAAAGCTTTATGCGATTTGGGACCTAGCATAAACCTTATACCACTATCTA
*
350164 CCTTCAGAAAGTTAGGAATTGGTAATATGAACCCCACTGCAGTGAAATTGCAATTAGCGGATCGA
326 CCTTCAGAAAGTTAGGAATTGGTAATATGAACCCCACTGCAGTGAAATTGCAATTAGCAGATCGA
* * * * *
350229 TCCTTGGCTCAACTTGAAGGGCAGATCAAAGACATTTTAGTTCATGTGGAAAAATTCATTTTTCC
391 TCCTTGGCTCAACTTGAAGGGCAGATCAAAGACATTTTAGTTCATGCGAAAAAAGTAATTTTCCC
* * * *
350294 AGTTGATTTTATTATACTTAATTGCAAGGCAGACAAAGAGGTTCCCATAATCATAGGACGACCAT
456 AGTTGATTTTATTAAACTTAACTACAAGGCAAACAAAGAGGTTCCCATAATCATAGGACGACCAT
*
350359 TTTTAGCTACCGGACACACTCTCATCGATGTTTACAAAGGCGAATTGACCATGCGACAAGCTGAT
521 TTTTAGCTACCGGACACACTCTCATCGATGTTTACAAAGGCGAATTGACCATGCGACAAGATGAT
* *
350424 GAGAATGTTACCTTTAGTGTTTTTGAATTTTTTCCATG-AAGG-GATAATGAAAAATGTTACACT
586 GAGAATGTTACCTTCAGTGTTTTTGAATTTTTTCCATGCAAGGAGA-AA-GAAAAATGTCACACT
***
350487 GTTGATGTGCTAGAATGTTTAATTGAGGAAGAATTCAATGATGGAAGCACATTACTTTTTGAAGA
649 GTTGATGTGCTAGAATGTTTAATTGAGGAAGAATTCAATGACCAAAGCACATTACTTTTTGAAGA
350552 ATTTACGATGACATCTGATGATGAATTTTTAGCTGACTGCGACAGCATGGTTGAAGCTAATAACA
714 ATTTACGATGACATCTGATGATGAATTTTTAGCTGACTGCGACAGCATGGTTGAAGCTAATAACA
* * *
350617 TTGACCTAAAGCACAAATGGTTGATTGAATCTTTAGATTTAGCCAACAGAACGACTCCAGTTTTT
779 TTAACCTAAAGCACAAATGGTAGATTGAATCTTTAGATTTAGCCAACAGAACCACTCCAGTTTTT
*
350682 AAGCCATCTATTGAAGAAGTTCCAACTGTAGAATTGGAGCCACTGCCTGCTCGTCTGAAATAT
844 AAGCCATCTATTGAAGAAGTTCCAACTGTAGAATTGGAGCCACTGCCTGCTCATCTGAAATAT
*
350745 GTATTTCGTGGCGACAATAGTACTCTCCCA
1 GTATTTCTTGGCGACAATAGTACTCTCCCA
Statistics
Matches: 873, Mismatches: 60, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
904 2 0.00
905 6 0.01
906 864 0.99
907 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (906 bp):
GTATTTCTTGGCGACAATAGTACTCTCCCAGTTATTGTCTCCGCAAAACTAGATGCAACTCAAGA
AGAAAAATTAATCCATATTCTTAAGCAGCATAAACAAGATACTGCTTGGAGTATTACCAATATTC
AAGGCATTAGTCCATCTTTTTGCATGCACAAAATTAAGTTGAAAGAAGAAGGCAAGCAATCGATT
CAGCAACAACGAAGATTGAATGAGAAAATGAAGGAAATTGTTAAAAAGGAAATTATAAAGTGGCT
TGACTCTGGAATTGATAAAGCTTTATGCGATTTGGGACCTAGCATAAACCTTATACCACTATCTA
CCTTCAGAAAGTTAGGAATTGGTAATATGAACCCCACTGCAGTGAAATTGCAATTAGCAGATCGA
TCCTTGGCTCAACTTGAAGGGCAGATCAAAGACATTTTAGTTCATGCGAAAAAAGTAATTTTCCC
AGTTGATTTTATTAAACTTAACTACAAGGCAAACAAAGAGGTTCCCATAATCATAGGACGACCAT
TTTTAGCTACCGGACACACTCTCATCGATGTTTACAAAGGCGAATTGACCATGCGACAAGATGAT
GAGAATGTTACCTTCAGTGTTTTTGAATTTTTTCCATGCAAGGAGAAAGAAAAATGTCACACTGT
TGATGTGCTAGAATGTTTAATTGAGGAAGAATTCAATGACCAAAGCACATTACTTTTTGAAGAAT
TTACGATGACATCTGATGATGAATTTTTAGCTGACTGCGACAGCATGGTTGAAGCTAATAACATT
AACCTAAAGCACAAATGGTAGATTGAATCTTTAGATTTAGCCAACAGAACCACTCCAGTTTTTAA
GCCATCTATTGAAGAAGTTCCAACTGTAGAATTGGAGCCACTGCCTGCTCATCTGAAATAT
Done.