Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011954.1 Kokia drynarioides strain JFW-HI SEQ_126952, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3534
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27


Found at i:422 original size:10 final size:10

Alignment explanation


    Indices: 402--442  Score: 55
    Period size: 10  Copynumber: 4.0  Consensus size: 10

        392 TGAACCTCGC

                       
        402 CTTTAACTTTA
          1 CTTTAA-TTTA

                 *    
        413 CTTTACTTTA
          1 CTTTAATTTA

                      
        423 CTTTAATTTA
          1 CTTTAATTTA

            *         
        433 ATTTAATTTA
          1 CTTTAATTTA

        443 AGGCTATGCC


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  10   22  0.81
  11    5  0.19

ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59


Consensus pattern (10 bp):   
CTTTAATTTA
Done.