Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011956.1 Kokia drynarioides strain JFW-HI SEQ_126954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5095
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Found at i:844 original size:215 final size:215
Alignment explanation
Indices: 1--5095 Score: 4440
Period size: 215 Copynumber: 23.4 Consensus size: 215
* ** * *
1 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * * * *
66 TAGACCAAAAGATGCAATTCCTCGAGCATGGAATGGTTGGAAAATTGCTCG-TAGAAACGGATGG
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAAATTGCTCGAAAG-AATGGATCG
* * * *
130 TCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTT
129 TCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * *
195 CGTCCAAAAACCAAGAGAGAGAC
193 CGTTCAAGAACCAAGAGAGAAAC
* * * * *
218 AATTTTCACATAAATAAGTTTTTAATTCAAAGTCCAAAAGTTGTTAACAAAATGACAAACTACTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * *
283 AAACCAAGA-GATTCGACTTC-CGGAG-AGTGGAATG-TTCAAAAATTGCTTG-ATGAAGTGGAT
66 AGACCAA-ATGATGCGATTTCTC-GAGCA-TGGAATGTTTCGAAAATTGCTCGAAAGAA-TGGAT
* * * * * *
343 CAT-TTGTACATAATACACTTGAAGGATCCGATGTTTTAAAAGAACTTGTAAAAGTTTGACAAGT
127 CGTCTTG-----AAT--ACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
407 CCGGAGGTTCG-TCGAAGAACCAAGAGAGAATC
184 TCAGAAGTTCGTTC-AAGAACCAAGAGAGAAAC
* * *
439 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * ** * * **
504 AGATCAAATGATGCGATTTAC-CGAACATTCAATG-TTCTAACAATTTG-TAGAGGGAATGGATC
66 AGACCAAATGATGCGATTT-CTCGAGCATGGAATGTTTCGAA-AA-TTGCTCGAAAGAATGGATC
* * * *
566 G-CATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAG
128 GTC-TTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG
* * * *
630 TTCATTCAGGATCTAAGAGAGAAAC
191 TTCGTTCAAGAACCAAGAGAGAAAC
* * *
655 AATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTTAC-AAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * *
719 AGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTG-TTGAAAGAATGGATCGC
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAA-AATTGCTCGAAAGAATGGATCGT
* * * *
783 CTTAAATACTTTAAGGAACCAATGTCATAAAAGAACTCGTAAAAGTTTGAAAAGGTCAGAAGTTC
130 CTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
848 G-TCTAAGAACCAAGAGAGAAAC
194 GTTC-AAGAACCAAGAGAGAAAC
*
870 AATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTACAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTTACAAAATGACAAACTATT
* * *
935 TAGACCAAGTGATACGATTTCTCGAGCATGGAATG-TTCGAAACATTGCTCGAACA-AACGGATC
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAA-ATTGCTCGAA-AGAATGGATC
* * * * * * ** *
998 ATCTTGAATACTTTATGGAACTGAAGTTATAACAGAAATAGTAAAAGTTTTCCTAGTTC-GAAAG
128 GTCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAG
* *
1062 TTCGTCCAAGAACCAAGAGATAAAC
191 TTCGTTCAAGAACCAAGAGAGAAAC
* * ** * *
1087 AATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGAACAAACT
1 AATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATG-ACAAACT
* * ** * * *
1150 ATTTTGACCAAATGATGCGATTTCCCGAGCACAGAATG-TTCGGAATATTGATCGAAGGAATGGA
62 ATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTC-GAAAATTGCTCGAAAGAATGGA
* * *
1214 TCGTCTTGAATACTTTAAGGAACCAAGGTTATAAAAGAACTCGTAAAAAGCTTGACCAGTTCAAA
126 TCGTCTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGA
* *
1279 AGATC-ATCTAAGAACCAA-AGGAGAAAC
189 AGTTCGTTC-AAGAACCAAGA-GAGAAAC
* ** *
1306 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTT-CAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * *
1370 TAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCG-TAGAAACGGATGG
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAAATTGCTCGAAAG-AATGGATCG
* * * *
1434 TCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTT
129 TCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* *
1499 CGTCCAAGAACCAAGAGAGAGAC
193 CGTTCAAGAACCAAGAGAGAAAC
* *
1522 AATTTTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * ** * *
1587 AAACCAAAAGATTCGATTTC-CGGAAAATGGAATG-TTCGAAAATTGCTCG-ATGATGTGGATCA
66 AGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTTCGAAAATTGCTCGAAAGA-ATGGATC-
* * * * * * * * *
1649 TTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAACTCCG
128 -GTCT-T-GAAT--ACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
* * * *
1714 GACGTTCGTCCAAGAAGCAAGAAAGAAAC
187 GAAGTTCGTTCAAGAACCAAGAGAGAAAC
* * * *
1743 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
** * * * * * *
1808 AGTTCAAATGATGCGATTTTTCGAACGTTGAATG-TTCGAAAAATTTG-TAGAAGGAATGGATCG
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCG-AAAA-TTGCTCGAAAGAATGGATCG
* * * *
1871 -CATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGT
129 TC-TTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
* * * *
1935 TCATTCAGGATCTAAGAGAGAAAC
192 TCGTTCAAGAACCAAGAGAGAAAC
* * *
1959 AATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTTAC-AAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * *
2023 AGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTG-TTGAAAGAATGGATCGC
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAA-AATTGCTCGAAAGAATGGATCGT
* * * *
2087 CTTAAATACTTTAAGGAACCAATGTCATAAAAGAACTCGTAAAAGTTTGAAAAGGTCAGAAGTTC
130 CTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
2152 G-TCTAAGAACCAAGAGAGAAAC
194 GTTC-AAGAACCAAGAGAGAAAC
*
2174 AATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * *
2238 AGACCAAGTGATGCGATTTCTCGAGCATGGAAT-TTTCGAAACATTGCTCGAACA-AACGGATCA
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAA-ATTGCTCGAA-AGAATGGATCG
** * * * * * ** * *
2301 TCTTGAATACTTTATTGAACTGAATTTATAACAGAAATAGTAAAAGTTTTCCTAGTT-TGAAAGT
129 TCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGT
* *
2365 TCGTCCAAGAACCAAGAGATAAAC
192 TCGTTCAAGAACCAAGAGAGAAAC
* * ** * * *
2389 AATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGGCAAACTA
1 AATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATGACAAACTA
* * * * * * *
2452 TTTTGACCGAATGATGCGATTTCCCGAGCATTGAATG-TTCAGAATATTGCTCGAAGGATTGGAT
63 TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTC-GAAAATTGCTCGAAAGAATGGAT
* * * * * * *
2516 CATCTTGAATAGTTTAAGCAACCAAAGTTATTATAGGAGAAATAGTAAAAGCTTGACAAGTTCAG
127 CGTCTTGAATACTTTAAGGAACC-AAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCAG
* ** * *
2581 AAGTTTG-TCTAAGAATGAAAAGAGAAAT
188 AAGTTCGTTC-AAGAACCAAGAGAGAAAC
* * *
2609 AATTCTCACATAAATATA-TTTTTAATTCAAGGACCAAAAAGTTGTTTCCAAAATGACAAACTAT
1 AATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTAT
*** * * ** * * * *
2673 TTAGATTGAATGATGCTATTTCCCGAGCACAGAAAG-TTCGGAATATTGATCGAAGGAATGGATC
64 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTC-GAAAATTGCTCGAAAGAATGGATC
* * * *
2737 GTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACCAGTTCAAAAG
128 GTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAG
*
2802 TTC-ATCTAAGAACCAA-AGGAGAAAC
191 TTCGTTC-AAGAACCAAGA-GAGAAAC
* ** * *
2827 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* ** * * *
2892 TAGACCAAAAGATGTAATTTCTCGAGCATGGAATGTTT-GAAAAATTGCTCG-TAGAAACGGATG
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCG-AAAATTGCTCGAAAG-AATGGATC
* * * * *
2955 GTCTTGAATACTTTAAGGAATCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGT
128 GTCTTGAATACTTTAAGGAA-CCAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
* * *
3020 TCGTCCAAAAACCAAGAGAGAGAC
192 TCGTTCAAGAACCAAGAGAGAAAC
* * * *
3044 AATTTTCACATAAATAAGTTTCTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAGCTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * ** * *
3109 AAACCAAAAGATTTGATTT-TCGAAGAATGGAATG-TTCGAAAATTGCTCG-ATGAAGTGGATCA
66 AGACCAAATGATGCGATTTCTCG-AGCATGGAATGTTTCGAAAATTGCTCGAAAGAA-TGGATC-
* * * * * * *
3171 TTTATATATAATACATTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTCCG
128 -GTCT-T-GAATAC-TTT-AAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
* * *
3236 GAAGTTCATCCAAGAACCAAGAAAGAAAC
187 GAAGTTCGTTCAAGAACCAAGAGAGAAAC
* * * *
3265 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
** * * * * * *
3330 AGTTCAAATGATGCGATTTTTCGAACGTTGAATG-TTCGAAAAATTTG-TAGAAGGAATGGATCG
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCG-AAAA-TTGCTCGAAAGAATGGATCG
* * * *
3393 -CATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGT
129 TC-TTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
* * * *
3457 TCATTCAGGATCTAAGAGAGAAAC
192 TCGTTCAAGAACCAAGAGAGAAAC
* * *
3481 AATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTTAC-AAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * *
3545 AGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTG-TTGAAAGAATGGATCGC
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAA-AATTGCTCGAAAGAATGGATCGT
* * * *
3609 CTTAAATACTTTAAGGAACCAATGTCATAAAAGAACTCGTAAAAGTTTGAAAAGGTCAGAAGTTC
130 CTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
3674 G-TCTAAGAACCAAGAGAGAAAC
194 GTTC-AAGAACCAAGAGAGAAAC
*
3696 AATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * *
3760 AGACCAAGTGATGCGATTTCTCGAGCATGGAAT-TTTCGAAACATTGCTCGAACA-AACGGATCA
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAA-ATTGCTCGAA-AGAATGGATCG
** * * * * * ** * *
3823 TCTTGAATACTTTATTGAACTGAATTTATAACAGAAATAGTAAAAGTTTTCCTAGTT-TGAAAGT
129 TCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGT
* *
3887 TCGTCCAAGAACCAAGAGATAAAC
192 TCGTTCAAGAACCAAGAGAGAAAC
* * ** * * *
3911 AATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGGCAAACTA
1 AATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATGACAAACTA
* * * * * * *
3974 TTTTGACCGAATGATGCGATTTCCCGAGCATTGAATG-TTCAGAATATTGCTCGAAGGATTGGAT
63 TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTC-GAAAATTGCTCGAAAGAATGGAT
* * * * * * *
4038 CATCTTGAATAGTTTAAGCAACCGAAGTTATTAGAGGAGAAATAGTAAAAGCTTGACAAGTTCAG
127 CGTCTTGAATACTTTAAGGAACC-AAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCAG
* ** * *
4103 AAGTTTG-TCTAAGAATGAAAAGAGAAAT
188 AAGTTCGTTC-AAGAACCAAGAGAGAAAC
* * * * **
4131 AATTCTCACATAAATATA-TTTTTAATTCCAGGACCAAAAAGTTGTTTCCAAAATGACAGCCTAT
1 AATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTAT
* * * ** * * *
4195 TTAGACCGAATGATGCTATTTCCCGAGCACAGAATG-TTCGGAATATTGATCGAAGGAATGGATC
64 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTC-GAAAATTGCTCGAAAGAATGGATC
* * *
4259 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACCAGTTCAAAAG
128 GTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAG
*
4324 TTC-ATCTAAGAACCAA-AGGAGAAAC
191 TTCGTTC-AAGAACCAAGA-GAGAAAC
* ** * *
4349 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * * * *
4414 TAGACCAAAAGATGCAACTTCTCGAGCATGAAATGTTTGGAAAATTGCTCG-TAGAAACGGATGG
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAAATTGCTCGAAAG-AATGGATCG
* * * * *
4478 TCTTGAATACTTTAAGGAACCGAAGTTGTAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTT
129 TCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * *
4543 CGTCCAAGAACCAAGAGAGAGAT
193 CGTTCAAGAACCAAGAGAGAAAC
* * *
4566 AATTTTCACATAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * ** * *
4631 AAACCAAAAGATTCGATTTC-CGGAAAATGGAATG-TTCGAAAATTGCTCG-ATGATGTGGATCA
66 AGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTTCGAAAATTGCTCGAAAGA-ATGGATC-
* * * * * * * * *
4693 TTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAACTCCG
128 -GTCT-T-GAAT--ACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCA
* * * *
4758 GACGTTCGTCCAAGAAGCAAGAAAGAAAC
187 GAAGTTCGTTCAAGAACCAAGAGAGAAAC
* * * *
4787 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * *
4852 AGATCAAATGATGCGATTT-TCCGAACGTTGAATG-TTCGAAAAATTTG-TAGAAGGAATGGATC
66 AGACCAAATGATGCGATTTCT-CGAGCATGGAATGTTTCG-AAAA-TTGCTCGAAAGAATGGATC
* * * * * *
4914 -TCATAGAATGCTTTGAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCGGAAG
128 GTC-TTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG
* * *
4978 TTCATCCAAGAACTAAGAGAGAAAC
191 TTCGTTCAAGAACCAAGAGAGAAAC
* * *
5003 AATTCTCATGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
*
5068 AGACCGAATGATGCGATTTCTCGAGCAT
66 AGACCAAATGATGCGATTTCTCGAGCAT
Statistics
Matches: 3951, Mismatches: 754, Indels: 347
0.78 0.15 0.07
Matches are distributed among these distances:
213 2 0.00
214 44 0.01
215 891 0.23
216 766 0.19
217 645 0.16
218 473 0.12
219 97 0.02
220 340 0.09
221 612 0.15
222 54 0.01
223 27 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (215 bp):
AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAAATTGCTCGAAAGAATGGATCGTC
TTGAATACTTTAAGGAACCAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGT
TCAAGAACCAAGAGAGAAAC
Found at i:1361 original size:652 final size:646
Alignment explanation
Indices: 1--5095 Score: 4662
Period size: 652 Copynumber: 7.8 Consensus size: 646
** *
1 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTA-TTCAAAGACCAAAAGTT-G-TTTCAAAATGACAAACTATT
* * * * * * * *
66 TAGACCAAAAGATGCAATTCCTCGAGCATGGAATGGTTGGAA-AATTGCTCG-TAGAAACGGATG
63 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAATTGCTCGAAAG-AATGGATC
* * * * *
129 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGT
127 GTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
* * * * * *
194 TCGTCCAAAAACCAAGAGAGAGACAATTTTCACATAAATAAGTTTTTAATTCAAAGTCCAAAAGT
192 TCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * *
259 TGTTAACAAAATGACAAACTACTTAAACCAAGA-GATTCGACTTC-CGGAG-AGTGGAATGTTC-
257 TGTTTACAAAATGACAAACTATTTAGACCAA-ATGATGCGATTTCTC-GAGCA-TGGAATGTTCG
* * * * * * * *
320 AAAAATTGCTTGATGAAGTGGATCAT-TTGTACATAATACACTTGAAGGATCCGATGTTTTAAAA
319 AAAAATTGCTCGAAGAAATGGATCATCTTG-----AAT--ACTTTAAGGAACTGAAGTTATAAAA
* * * * * * **
384 GAACTTGTAAAAGTTTGACAAGTCCGGAGGTTCGTCGAAGAACCAAGAGAGAATCAAATCCCACG
377 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC-AATTTCACG
* *
449 TCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATCAAATG
441 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * *
514 ATGCGATTTAC-CGAACATTCAATGTTC-TAACAATTTG-TAGAGGGAATGGATCG-CATAGAAT
506 ATGCGATTT-CTCGAGCATTGAATGTTCGGAA-AA-TTGCTCGAAGGAATGGATCGTC-TTGAAT
* * * * *
575 GCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGTTCAT-TCAG
567 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCT-AA
* *
639 GATCTAAGAGAGAAAC
631 GAACCAAGAGAGAAAC
* *
655 AATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTT-ACAAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTT-ATTCAAAGACCAAAAGTTGTTTCA-AAATGACAAACTATTT
* * * * * * *
719 AGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTG-TTGAAAGAATGGATCGC
64 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAATTGCTCGAAAGAATGGATCGT
* * *
783 CTTAAATACTTTAAGGAACC-AATGTCATAAAAGAACTCGTAAAAGTTTGAAAAGGTCAGAAGTT
129 CTTAAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
*
847 CGTCTAAGAACCAAGAGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
193 CGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* *
912 GTTTTACAAAATGACAAACTATTTAGACCAAGTGATACGATTTCTCGAGCATGGAATGTTCGAAA
258 G-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAA
* * * * * * *
977 CATTGCTCGAACAAACGGATCATCTTGAATACTTTATGGAACTGAAGTTATAACAGAAATAGTAA
322 AATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAA
** * * * *
1042 AAGTTTTCCTAGTTCGAAAGTTCGTCCAAGAACCAAGAGATAAACAATTTACACATAAATAAGTA
387 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTT-CACGTAAATAAGTT
** * * *
1107 TTTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGAACAAACTATTTTGACCAAATGATGCGAT
451 TTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATG-ACAAACTATTTAGACCAAATGATGCGAT
* ** * *
1171 TTCCCGAGCACAGAATGTTCGGAATATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
513 TTCTCGAGCATTGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
1236 CC-AAGGTTATAAAAGAACTCGTAAAAAGCTTGACCAGTTCAAAAGATCATCTAAGAACCAA-AG
578 CCGAA-GTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCATCTAAGAACCAAGA-
1299 GAGAAAC
640 GAGAAAC
** *
1306 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTCAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTA-TTCAAAGACCAAAAGTT-GTTTCAAAATGACAAACTATTT
* * * * * *
1371 AGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTTGGAA-AATTGCTCG-TAGAAACGGATGG
64 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAATTGCTCGAAAG-AATGGATCG
* * * * *
1434 TCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTT
128 TCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * * *
1499 CGTCCAAGAACCAAGAGAGAGACAATTTTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT
193 CGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * **
1564 GTTTACAAAATGACAAACTATTTAAACCAAAAGATTCGATTTC-CGGAAAATGGAATGTTCG-AA
258 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAA
* ** * * * * *
1627 AATTGCTCGATGATGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAAC
322 AATTGCTCGAAGAAATGGATCA--TCT-T-GAAT--ACTTTAAGGAACTGAAGTTATAAAAGAAC
* * * * * * * ** *
1692 TTGTAAAAGTTTGACAACTCCGGACGTTCGTCCAAGAAGCAAGAAAGAAACAAATCCCACGTCAA
381 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC-AATTTCACGTAAA
* **
1757 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTTAGTTCAAATGATGC
445 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * * *
1822 GATTTTTCGAACGTTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCG-CATAGAATGCTTTA
510 GATTTCTCGAGCATTGAATGTTCGGAAAA-TTGCTCGAAGGAATGGATCGTC-TTGAATACTTTA
* * * * * *
1885 AGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGTTCAT-TCAGGATCTA
573 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCT-AAGAACCA
1949 AGAGAGAAAC
637 AGAGAGAAAC
* *
1959 AATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTT-ACAAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTT-ATTCAAAGACCAAAAGTTGTTTCA-AAATGACAAACTATTT
* * * * * * *
2023 AGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTG-TTGAAAGAATGGATCGC
64 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAATTGCTCGAAAGAATGGATCGT
* * *
2087 CTTAAATACTTTAAGGAACC-AATGTCATAAAAGAACTCGTAAAAGTTTGAAAAGGTCAGAAGTT
129 CTTAAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
*
2151 CGTCTAAGAACCAAGAGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
193 CGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * *
2216 GTTTAC-AAATGACAAACTATTTAGACCAAGTGATGCGATTTCTCGAGCATGGAATTTTCGAAAC
258 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAA
* * ** * * * *
2280 ATTGCTCGAACAAACGGATCATCTTGAATACTTTATTGAACTGAATTTATAACAGAAATAGTAAA
323 ATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAA
** * * * * *
2345 AGTTTTCCTAGTTTGAAAGTTCGTCCAAGAACCAAGAGATAAACAATTTACACATAAATAAGTAT
388 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTT-CACGTAAATAAGTTT
** * * * * *
2410 TTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGGCAAACTATTTTGACCGAATGATGCGATTT
452 TTAATTCAAAGACCAAAAG-TTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * *
2474 CCCGAGCATTGAATGTTCAGAATATTGCTCGAAGGATTGGATCATCTTGAATAGTTTAAGCAACC
515 CTCGAGCATTGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * * ** ** *
2539 AAAGTTATTATAGGAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTGTCTAAGAATGAAAAGA
580 GAAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCTAAGAACCAAGAGA
*
2604 GAAAT
642 GAAAC
* *
2609 AATTCTCACATAAATATA-TTTTTAATTCAAGGACCAAAAAGTTGTTTCCAAAATGACAAACTAT
1 AATTCTCACGTAAATA-AGTTTTT-ATTCAAAGACC-AAAAGTTGTTT-CAAAATGACAAACTAT
*** * * ** * ** * *
2673 TTAGATTGAATGATGCTATTTCCCGAGCACAGAAAGTTCGGAAT-ATTGATCGAAGGAATGGATC
62 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAATTGCTCGAAAGAATGGATC
* * * * * *
2737 GTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACCAGTTCAAAAG
127 GTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAG
* * **
2802 TTCATCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAA
191 TTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * ** *
2866 CTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGATGTAATTTCTCGAGCATGGAATGTTTG
255 GTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCG
* * ** *
2931 AAAAATTGCTCGTAGAAACGGATGGTCTTGAATACTTTAAGGAA-TCGAAGTTATAAAATAACTC
319 AAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACT-GAAGTTATAAAAGAACTC
* ** * * *
2995 GTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAAAACCAAGAGAGAGACAATTTTCACATAAATA
383 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TTTCACGTAAATA
* * * * **
3060 AGTTTCTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAGCTATTTAAACCAAAAGATTTGA
447 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * * *
3125 TTT-TCGAAGAATGGAATGTTC-GAAAATTGCTCG-ATGAAGTGGATCATTTATATATAATACAT
512 TTTCTCG-AGCATTGAATGTTCGGAAAATTGCTCGAAGGAA-TGGATC--GTCT-T-GAATAC-T
* * * * *
3187 TTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTCCGGAAGTTCATCCAAGAA
570 TT-AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCTAAGAA
*
3252 CCAAGAAAGAAAC
634 CCAAGAGAGAAAC
* * * *
3265 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTT-ATTCAAAGACCAAAAGTTGTT-TCAAAATGACAAACTATTT
** * * * * * * * *
3330 AGTTCAAATGATGCGATTTTTCGAACGTTGAATG-TTCGAAAAATTTG-TAGAAGGAATGGATCG
64 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAA-TTGCTCGAAAGAATGGATCG
* * * * *
3393 -CATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGT
128 TCTTA-AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
* * * * * *
3457 TCAT-TCAGGATCTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAG
192 TCGTCT-AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * *
3521 TTGTTTAC-AAATGACAAAATATTTAGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGA
256 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTCGA
* * * ** * * *
3585 ATATTTG-TTGAA-AGAATGGATCGCCTTAAATACTTTAAGGAAC-CAATGTCATAAAAGAACTC
320 AAAATTGCTCGAAGA-AATGGATCATCTTGAATACTTTAAGGAACTGAA-GTTATAAAAGAACTC
* * * *
3647 GTAAAAGTTTGAAAAGGTC-AGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCGCGTAAAT
383 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TCACGTAAAT
*
3711 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAATGACAAACTATTTAGACCAAGTGATGCG
446 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * ** * * **
3775 ATTTCTCGAGCATGGAATTTTC-GAAACATTGCTCGAACAAACGGATCATCTTGAATACTTTATT
511 ATTTCTCGAGCATTGAATGTTCGGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * * ** * * * *
3839 GAACTGAATTTATAACAGAAATAGTAAAAGTTTTCCTAGTT-TGAAAGTTCGTCCAAGAACCAAG
575 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCATCTAAGAACCAAG
*
3903 AGATAAAC
639 AGAGAAAC
* * ** * * * *
3911 AATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTTTTTTTAAGAAATGGCAAACTAT
1 AATTCT-CACGTAAATAAGT-TTTTATTCAAAGACCAAAAG-TTGTTTCA-AAATGACAAACTAT
* * * * * * *
3975 TTTGACCGAATGATGCGATTTCCCGAGCATTGAATGTTCAGAAT-ATTGCTCGAAGGATTGGATC
62 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAATTGCTCGAAAGAATGGATC
* * * * * * * *
4039 ATCTTGAATAGTTTAAGCAACCGAAGTTATTAGAGGAGAAATAGTAAAAGCTTGACAAGTTCAGA
127 GTCTTAAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCAGA
* ** * * * * *
4104 AGTTTGTCTAAGAATGAAAAGAGAAATAATTCTCACATAAATATA-TTTTTAATTCCAGGACCAA
189 AGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-A
* ** * * * **
4168 AAAGTTGTTTCCAAAATGACAGCCTATTTAGACCGAATGATGCTATTTCCCGAGCACAGAATGTT
252 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * * * * **
4233 CGGAATATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
317 CGAAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACT
* * * * *
4298 CGTAAAAAGCTTGACCAGTTCAAAAGTTCATCTAAGAACCAA-AGGAGAAACAATTCTCACGTAA
382 CGT-AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA-GAGAAACAATT-TCACGTAA
* ** * * *
4362 ATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGAT
444 ATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * * *
4427 GCAACTTCTCGAGCA-TGAAATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATACTTT
508 GCGATTTCTCGAGCATTG-AATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* * * * * * *
4491 AAGGAACCGAAGTTGTAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCA
572 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCTAAGAACCA
* *
4556 AGAGAGAGAT
637 AGAGAGAAAC
* * *
4566 AATTTTCACATAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTT-ATTCAAAGACCAAAAGTTGTTT-CAAAATGACAAACTATTT
* * * ** * * *
4631 AAACCAAAAGATTCGATTTC-CGGAAAATGGAATG-TTCGAA-AATTGCTCG-ATGATGTGGATC
64 AGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTTAGAATAATTGCTCGAAAGA-ATGGATC
* * * * * * *
4692 ATTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAACTCC
127 --GTCT-TA-AAT--ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * * * * *
4757 GGACGTTCGTCCAAGAAGCAAGAAAGAAACAAATCCCACGTCAATAAGTTTTTAATTCAAAGACC
186 AGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * *
4822 AAAAGTTGTTCACAAAATGACAAACTATTTAGATCAAATGATGCGATTT-TCCGAACGTTGAATG
251 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATG
* * * * * *
4886 TTCGAAAAATTTG-TAGAAGGAATGGATC-TCATAGAATGCTTTGAGGAACCT-AAGTTGTAAAA
315 TTCGAAAAA-TTGCTCGAAGAAATGGATCATC-TTGAATACTTTAAGGAA-CTGAAGTTATAAAA
* * * * *
4948 GGACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCATG
377 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TCACG
* * *
5013 TAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAATATTTAGACCGAATG
441 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
5078 ATGCGATTTCTCGAGCAT
506 ATGCGATTTCTCGAGCAT
Statistics
Matches: 3599, Mismatches: 701, Indels: 282
0.79 0.15 0.06
Matches are distributed among these distances:
645 4 0.00
646 180 0.05
647 171 0.05
648 110 0.03
649 21 0.01
650 256 0.07
651 271 0.08
652 919 0.26
653 394 0.11
654 415 0.12
655 561 0.16
656 250 0.07
657 12 0.00
658 7 0.00
659 28 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (646 bp):
AATTCTCACGTAAATAAGTTTTTATTCAAAGACCAAAAGTTGTTTCAAAATGACAAACTATTTAG
ACCAAATGATGCGATTTCTCGAGCATGGAATGTTTAGAATAATTGCTCGAAAGAATGGATCGTCT
TAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGT
CTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATT
GCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGT
TTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTCACGTAAATAAGTTTTTAA
TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAG
CATTGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCTAAGAACCAAGAGAGAAAC
Found at i:1912 original size:437 final size:430
Alignment explanation
Indices: 1--5095 Score: 4658
Period size: 437 Copynumber: 11.7 Consensus size: 430
* ** * *
1 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * * * *
66 TAGACCAAAAGATGCAATTCCTCGAGCATGGAATGGTT-GGAAAATTGCTCGTAGAAACGGATGG
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAAT-GTTCGAAAAATTGCTCGAAGGAATGGATCG
* * * *
130 TCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTT
129 -CTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * * *
195 CGTCCAAAAACCAAGAGAGAGACAATTTTCACATAAATAAGTTTTTAATTCAAAGTCCAAAAGTT
193 CGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * *
260 GTTAACAAAATGACAAACTACTTAAACCAAGA-GATTCGACTTCCGGAG-AGTGGAATGTTCAAA
258 GTTTACAAAATGACAAACTATTTAGACCAA-ATGATGCGATTTCC-GAGCA-TGGAATGTTCGAA
* * * * * * * * *
323 AATTGCTTG-ATGAAGTGGATCATTTGTACATAATACACTTGAAGGATCCGATGTTTTAAAAGAA
320 AATTGCTCGAAGGAA-TGGATCGTCT-T--AGAAT--ACTTTAAGGAACCGAAGTTATAAAAGAA
* * * * * *
387 CTTGTAAAAGTTTGACAAGTCCGGAGGTTCGTCGAAGAACCAAGAGAGAATC
379 CTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
* * *
439 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * ** * * * *
504 AGATCAAATGATGCGATTTAC-CGAACATTCAATGTTCTAACAATTTG-TAGAGGGAATGGATCG
66 AGACCAAATGATGCGATTT-CTCGAGCATGGAATGTTCGAA-AAATTGCTCGAAGGAATGGATCG
* * * * *
567 CATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGTT
129 C-TAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * * * * * * *
632 CATTCAGGATCTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTT
193 CGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * *
697 GTTTAC-AAATGACAAAATATTTAGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAAT
258 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATG-TTCGAA-
* * * * *
761 ATTTG-TTGAAAGAATGGATCGCCTTA-AATACTTTAAGGAACC-AATGTCATAAAAGAACTCGT
320 AATTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCGT
* * *
823 AAAAGTTTGAAAAGGTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC
384 AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
*
870 AATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTACAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTTACAAAATGACAAACTATT
* * * ** * *
935 TAGACCAAGTGATACGATTTCTCGAGCATGGAATGTTCGAAACATTGCTCGAACAAACGGATCAT
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-G
* * * * * * ** * *
1000 CTTGAATACTTTATGGAACTGAAGTTATAACAGAAATAGTAAAAGTTTTCCTAGTTCGAAAGTTC
129 CTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
* * ** *
1065 GTCCAAGAACCAAGAGATAAACAATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTT
194 GTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAAGACCAAAAG-T
* * **
1129 TTTTTA-AGAAATGAACAAACTATTTTGACCAAATGATGCGATTTCCCGAGCACAGAATGTTCGG
257 TGTTTACA-AAATG-ACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGTTC-G
* *
1193 AATATTGATCGAAGGAATGGATCGTCTT-GAATACTTTAAGGAACC-AAGGTTATAAAAGAACTC
318 AAAATTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTC
* * * * * *
1256 GTAAAAAGCTTGACCAGTTCAAAAGATCATCTAAGAACCAA-AGGAGAAAC
382 GT-AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGA-GAGAAAC
* ** *
1306 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTT-CAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * * * *
1370 TAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAACGGATGGT
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-
* * * *
1435 CTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTC
129 CTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
* *
1500 GTCCAAGAACCAAGAGAGAGACAATTTTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
194 GTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * **
1565 TTTACAAAATGACAAACTATTTAAACCAAAAGATTCGATTTCCGGAAAATGGAATGTTCGAAAAT
259 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCATGGAATGTTCGAAAAT
* * * * * * * *
1630 TGCTCG-ATGATGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTT
323 TGCTCGAAGGA-ATGGATC--GTCT-TAGAAT--ACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
1694 GTAAAAGTTTGACAACTCCGGACGTTCGTCCAAGAAGCAAGAAAGAAAC
382 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
* * * *
1743 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
** * * * * *
1808 AGTTCAAATGATGCGATTTTTCGAACGTTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCGC
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA-TTGCTCGAAGGAATGGATCGC
* * * * *
1872 ATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
130 -TAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * * * * * *
1937 ATTCAGGATCTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTG
194 GTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * * * *
2002 TTTAC-AAATGACAAAATATTTAGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATA
259 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATG-TTCGAA-A
* * * * *
2066 TTTG-TTGAAAGAATGGATCGCCTTA-AATACTTTAAGGAACC-AATGTCATAAAAGAACTCGTA
321 ATTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCGTA
* * *
2128 AAAGTTTGAAAAGGTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC
385 AAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
*
2174 AATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * ** * *
2238 AGACCAAGTGATGCGATTTCTCGAGCATGGAATTTTCGAAACATTGCTCGAACAAACGGATCATC
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GC
* ** * * * * * ** * * *
2303 TTGAATACTTTATTGAACTGAATTTATAACAGAAATAGTAAAAGTTTTCCTAGTTTGAAAGTTCG
130 TAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * ** *
2368 TCCAAGAACCAAGAGATAAACAATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTTT
195 TCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAAGACCAAAAG-TT
* * * * *
2432 TTTTA-AGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATTGAATGTTCAGAA
258 GTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGTTC-GAA
* * * * * * * * *
2496 TATTGCTCGAAGGATTGGATCATCTT-GAATAGTTTAAGCAACCAAAGTTATTATAGGAGAAATA
320 AATTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTC
* * * ** * *
2560 GTAAAAGCTTGACAAGTTCAGAAGTTTGTCTAAGAATGAAAAGAGAAAT
382 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
* * *
2609 AATTCTCACATAAATATA-TTTTTAATTCAAGGACCAAAAAGTTGTTTCCAAAATGACAAACTAT
1 AATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTAT
*** * * ** * * * *
2673 TTAGATTGAATGATGCTATTTCCCGAGCACAGAAAGTTCGGAATATTGATCGAAGGAATGGATCG
64 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * * **
2738 -TCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACCAGTTCAAAAG
129 CT-A-GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCGGAAG
* * * * **
2802 TTCATCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAA
191 TTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAA
* * * ** *
2866 CTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGATGTAATTTCTCGAGCATGGAATGTTTG
255 GTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATGTTCG
* * * * * *
2931 AAAAATTGCTCGTAGAAACGGATGGTCTT-GAATACTTTAAGGAATCGAAGTTATAAAATAACTC
318 -AAAATTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * *
2995 GTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAAAACCAAGAGAGAGAC
382 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
* * * *
3044 AATTTTCACATAAATAAGTTTCTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAGCTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * ** * *
3109 AAACCAAAAGATTTGATTT-TCGAAGAATGGAATGTTCG-AAAATTGCTCG-ATGAAGTGGATCA
66 AGACCAAATGATGCGATTTCTCG-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGGATC-
** * * * *
3171 TTTATATATAATACATTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTCCG
128 ----GCTAGAATAC-TTT-AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * * *
3236 GAAGTTCATCCAAGAACCAAGAAAGAAACAAATCCCACGTCAATAAGTTTTTAATTCAAAGACCA
187 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
* ** * * * *
3301 AAAGTTGTTCACAAAATGACAAACTATTTAGTTCAAATGATGCGATTTTTCGAACGTTGAATGTT
252 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATGTT
* * * * * *
3366 CGAAAAATTTG-TAGAAGGAATGGATCG-CATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGA
316 CG-AAAA-TTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * * *
3429 CTCGTAAAAGTTTGACAAGTTCAGAAGTTCATTCAGGATCTAAGAGAGAAAC
379 CTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
* * *
3481 AATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTTAC-AAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * * *
3545 AGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTG-TTGAAAGAATGGATCGC
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCG-
* * * *
3609 CTTA-AATACTTTAAGGAACC-AATGTCATAAAAGAACTCGTAAAAGTTTGAAAAGGTCAGAAGT
129 C-TAGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * *
3672 TCGTCTAAGAACCAAGAGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
192 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGT
* *
3737 TGTTTAC-AAATGACAAACTATTTAGACCAAGTGATGCGATTTCTCGAGCATGGAATTTTCGAAA
257 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATGTTCGAAA
** * * ** * * * * *
3801 CATTGCTCGAACAAACGGATCATCTT-GAATACTTTATTGAACTGAATTTATAACAGAAATAGTA
321 -ATTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
** * * *
3865 AAAGTTTTCCTAGTT-TGAAAGTTCGTCCAAGAACCAAGAGATAAAC
385 AAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAAC
* * ** * * *
3911 AATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGGCAAACTA
1 AATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATGACAAACTA
* * * * * *
3974 TTTTGACCGAATGATGCGATTTCCCGAGCATTGAATGTTC-AGAATATTGCTCGAAGGATTGGAT
63 TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGAT
* * * * * * * * *
4038 CATCTTGAATAGTTTAAGCAACCGAAGTTATTAGAGGAGAAATAGTAAAAGCTTGACAAGTTCAG
127 C-GCTAGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCGG
* * ** * * * *
4103 AAGTTTGTCTAAGAATGAAAAGAGAAATAATTCTCACATAAATATA-TTTTTAATTCCAGGACCA
188 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTCAAAGACC-
* ** * * **
4167 AAAAGTTGTTTCCAAAATGACAGCCTATTTAGACCGAATGATGCTATTTCCCGAGCACAGAATGT
251 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATGT
* * *
4232 TCGGAATATTGATCGAAGGAATGGATCGTCTT-GAATACTTTAAGGAACCAAAGTTATAAAAGAA
315 TC-GAAAATTGCTCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * * *
4296 CTCGTAAAAAGCTTGACCAGTTCAAAAGTTCATCTAAGAACCAA-AGGAGAAAC
379 CTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGA-GAGAAAC
* ** * *
4349 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * * * * * *
4414 TAGACCAAAAGATGCAACTTCTCGAGCATGAAATGTTTGGAAAATTGCTCGTAGAAACGGATGGT
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-
* * * * *
4479 CTTGAATACTTTAAGGAACCGAAGTTGTAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTC
129 CTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
* * * *
4544 GTCCAAGAACCAAGAGAGAGATAATTTTCACATAAATAAGTTTTTAATTCAAAGGCCAAAAGTTG
194 GTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * **
4609 TTTACAAAATGACAAACTATTTAAACCAAAAGATTCGATTTCCGGAAAATGGAATGTTCGAAAAT
259 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCATGGAATGTTCGAAAAT
* * * * * * * *
4674 TGCTCG-ATGATGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTT
323 TGCTCGAAGGA-ATGGATC--GTCT-TAGAAT--ACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * * * * *
4738 GTAAAAGTTTGACAACTCCGGACGTTCGTCCAAGAAGCAAGAAAGAAAC
382 GTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
* * * *
4787 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * *
4852 AGATCAAATGATGCGATTT-TCCGAACGTTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCT
66 AGACCAAATGATGCGATTTCT-CGAGCATGGAATGTTCGAAAAA-TTGCTCGAAGGAATGGATCG
* * * * *
4915 CATAGAATGCTTTGAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCGGAAGTT
129 C-TAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * ** *
4980 CATCCAAGAACTAAGAGAGAAACAATTCTCATGTAAATAAGATTTTAATTCAAAGACCAAAAGTT
193 CGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* *
5045 GTTTACAAAATGACAAAATATTTAGACCGAATGATGCGATTTCTCGAGCAT
258 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCAT
Statistics
Matches: 3718, Mismatches: 799, Indels: 281
0.77 0.17 0.06
Matches are distributed among these distances:
429 15 0.00
430 306 0.08
431 352 0.09
432 335 0.09
433 99 0.03
434 134 0.04
435 570 0.15
436 236 0.06
437 1049 0.28
438 559 0.15
439 63 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (430 bp):
AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCT
AGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT
CCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGTTCGAAAATTGC
TCGAAGGAATGGATCGTCTTAGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT
TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
Found at i:2228 original size:867 final size:860
Alignment explanation
Indices: 1--5095 Score: 4605
Period size: 867 Copynumber: 5.9 Consensus size: 860
* ** * *
1 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * * * *
66 TAGACCAAAAGATGCAATTCCTCGAGCATGGAATGGTT-GGAAAATTGCTCGTAGAAACGGATGG
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAAT-GTTCGAAAAATTGCTCGAAGGAATGGATCG
* * * * * *
130 TCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTT
129 TCTAGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * * * * * *
195 CGTCCAAAAACCAAGAGAGAGACAATTTTCACATAAATAAGTTTTTAATTCAAAGTCCAAAAGTT
194 CATTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * *
260 GTTAACAAAATGACAAACTACTTAAACCAAGA-GATTCGACTTC-CGGAG-AGTGGAATG-TTCA
259 GTTTAC-AAATGACAAACTATTTAGACCAA-ATGATGCGATTTCTC-GAGCA-TGGAATGTTTCG
* * * * * * *
321 AAAATTGCTTG-ATGAAGTGGATCAT-TTGTACATAATACACTTGAAGGATCCGATGTTTTAAAA
320 AAAATTGCTCGAAAGAA-TGGATCGTCTTG-----AAT--ACTTTAAGGAACC-AAGTTATAAAA
* * * * * *
384 GAACTTGTAAAAGTTTGACAAGTCCGGAGGTTCGTCGAAGAACCAAGAGAGAATCAAATCCCACG
376 GAACTCGTAAAAGTTTGACAAGT-CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* *
449 TCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATCAAATG
440 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* ** * *
514 ATGCGATTTAC-CGAACATTCAATG-TTCTAACAATT--T-GTAGAGGGAATGGATCG-CATAGA
505 ATGCGATTT-CTCGAGCATGGAATGTTTCGAA-AATTGCTCGTAGA---AATGGATCGTC-TTGA
* * * * * *
573 ATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATTCA
564 ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCA
* * * * * *
638 GGATCTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTTAC
629 AGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * * *
703 -AAATGACAAAATATTTAGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTGT
694 AAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGAATG-TTCGAA-AATTGT
* * * * *
767 TGAAAGAATGGATCGCCT-TA-AATACTTTAAGGAACCAATGTCATAAAAGAACTCGTAAAAGTT
756 CGAAGGAATGGATCGTCTATAGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* *
830 TGAAAAGGTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC
821 TGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC
*
870 AATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTTACAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG-TTTACAAAATGACAAACTATT
* * * ** * *
935 TAGACCAAGTGATACGATTTCTCGAGCATGGAATGTTCGAAACATTGCTCGAACAAACGGATCAT
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* * * * * ** *
1000 CTTGAATACTTTATGGAA-CTGAAGTTATAACAGAAATAGTAAAAGTTTTCCTAGTTC-GAAAGT
130 CTAGAATACTTTAAGGAACCT-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGT
* * * * * ** *
1063 TCGTCCAAGAACCAAGAGATAAACAATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAG
193 TCATTCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * **
1127 TTTTTTTAAGAAATGAACAAACTATTTTGACCAAATGATGCGATTTCCCGAGCACAGAATG-TTC
257 -TTGTTT-ACAAATG-ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTC
* * *
1191 GGAATATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAGGTTATAAAAGAACTC
319 -GAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTC
* * ** * * *
1256 GTAAAAAGCTTGACCAGTTCAAAAGATCATCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAA
382 GT-AAAAGTTTGACAAG-TCGGAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAA
* ** * *
1320 TAAGTTTTTAGTTTGAAGACCAAAACTTGGTTT-CAAAATGACAAACTATTTAGACCAAAAGATG
444 TAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * *
1384 CAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATACTTTAA
508 CGATTTCTCGAGCATGGAATGTTTCGAAAATTGCTCGTAGAAATGGATCGTCTTGAATACTTTAA
* * * *
1449 GGAACCGAAGTTATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCAAG
573 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAG
* *
1514 AGAGAGACAATTTTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
638 AGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * * ** * *
1579 AACTATTTAAACCAAAAGATTCGATTTCCGGAAAATGGAATGTTCGAAAATTGCTCG-ATGATGT
703 AACTATTTAGACCGAATGATGCGATTTCC-GAGCATGGAATGTTCGAAAATTG-TCGAAGGA-AT
* * * * * * *
1643 GGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACA
765 GGATC--GTCTATAGAAT--ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * * * *
1708 ACTCCGGACGTTCGTCCAAGAAGCAAGAAAGAAAC
826 AGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC
* * * *
1743 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
** * * * * *
1808 AGTTCAAATGATGCGATTTTTCGAACGTTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCG-
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA-TTGCTCGAAGGAATGGATCGT
* * *
1871 CATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCAGAAGTT
130 C-TAGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * * * *
1936 CATTCAGGATCTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTT
194 CATTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * *
2001 GTTTACAAATGACAAAATATTTAGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATA
259 GTTTACAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAA-A
* * * * *
2066 TTTG-TTGAAAGAATGGATCGCCTTAAATACTTTAAGGAACCAATGTCATAAAAGAACTCGTAAA
323 ATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGTAAA
* * * *
2130 AGTTTGAAAAGGTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCGCGTAAATAAGTTT
387 AGTTTGACAA-GTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
2195 TTAATTCAAAGACCAAAAGTTGTTTAC-AAATGACAAACTATTTAGACCAAGTGATGCGATTTCT
451 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * * * ** *
2259 CGAGCATGGAAT-TTTCGAAACATTGCTCGAACAAACGGATCATCTTGAATACTTTATTGAACTG
516 CGAGCATGGAATGTTTCGAAA-ATTGCTCGTAGAAATGGATCGTCTTGAATACTTTAAGGAACCG
* * * * ** * * * * *
2323 AATTTATAACAGAAATAGTAAAAGTTTTCCTAGTTTGAAAGTTCGTCCAAGAACCAAGAGATAAA
580 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAA
* ** * * *
2388 CAATT-TACACATAAATAAGTATTTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGGCAAACT
645 CAATTCT-CACATAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATGACAAACT
* * * *
2451 ATTTTGACCGAATGATGCGATTTCCCGAGCATTGAATGTTCAGAATATTGCTCGAAGGATTGGAT
707 ATTTAGACCGAATGATGCGATTT-CCGAGCATGGAATGTTC-GAAAATTG-TCGAAGGAATGGAT
* * * * * * *
2516 CATCT-T-GAATAGTTTAAGCAACCAAAGTTATTATAGGAGAAATAGTAAAAGCTTGACAAGTTC
769 CGTCTATAGAATACTTTAAGGAACCAAAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTC
* ** * *
2579 AGAAGTTTGTCTAAGAATGAAAAGAGAAAT
831 AGAAGTTCGTCTAAGAACCAAGAGAGAAAC
* * *
2609 AATTCTCACATAAATATA-TTTTTAATTCAAGGACCAAAAAGTTGTTTCCAAAATGACAAACTAT
1 AATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTAT
*** * * ** * * * *
2673 TTAGATTGAATGATGCTATTTCCCGAGCACAGAAAGTTCGGAATATTGATCGAAGGAATGGATCG
64 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * * *
2738 TC-ATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACCAGTTCAAAAG
129 TCTA-GAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAG
* **
2802 TTCA-TCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAA
192 TTCATTC-AAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * **
2865 ACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGATGTAATTTCTCGAGCATGGAATGTTT
255 AGTT-GTTTAC-AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTT
* * * * *
2930 -GAAAAATTGCTCG-TAGAAACGGATGGTCTTGAATACTTTAAGGAATCGAAGTTATAAAATAAC
318 CG-AAAATTGCTCGAAAG-AATGGATCGTCTTGAATACTTTAAGGAA-CCAAGTTATAAAAGAAC
* * * * * *
2993 TCGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAAAACCAAGAGAGAGACAATTTTCACATAAA
380 TCGTAAAAGTTTGACAAG-TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * * * **
3058 TAAGTTTCTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAGCTATTTAAACCAAAAGATTT
444 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * *
3123 GATTT-TCGAAGAATGGAATG-TTCGAAAATTGCTCG-ATGAAGTGGATCATTTATATATAATAC
509 GATTTCTCG-AGCATGGAATGTTTCGAAAATTGCTCGTA-GAAATGGATC--GTCT-T-GAATAC
* * *
3185 ATTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTCCGGAAGTTCATCCAAG
568 -TTT-AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAG
* * * * * *
3250 AACCAAGAAAGAAACAAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAA
631 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
** * * * * * *
3315 AATGACAAACTATTTAGTTCAAATGATGCGATTTTTCGAACGTTGAATGTTCGAAAAATTTGTAG
696 AATGACAAACTATTTAGACCGAATGATGCGA-TTTCCGAGCATGGAATGTTCG-AAAA-TTGTCG
* * * *
3380 AAGGAATGGATCG-C-ATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTG
758 AAGGAATGGATCGTCTATAGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * *
3443 ACAAGTTCAGAAGTTCAT-TCAGGATCTAAGAGAGAAAC
823 ACAAGTTCAGAAGTTCGTCT-AAGAACCAAGAGAGAAAC
* * *
3481 AATTCTCACGTAAATAAGTTTTTCATTCAAAAACCAAAAGTTGTTTAC-AAATGACAAAATATTT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * * * *
3545 AGGCCGAATTATACGATTTCTCGAGCATGGAATGTTTAGAATATTTG-TTGAAAGAATGGATCGC
66 AGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGT
* * *
3609 CTTA-AATACTTTAAGGAACC-AATGTCATAAAAGAACTCGTAAAAGTTTGAAAAGGTCAGAAGT
130 C-TAGAATACTTTAAGGAACCTAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
* *
3672 TC-GTCTAAGAACCAAGAGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAG
193 TCATTC-AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
*
3736 TTGTTTACAAATGACAAACTATTTAGACCAAGTGATGCGATTTCTCGAGCATGGAAT-TTTCGAA
257 TTGTTTACAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAA
* * ** * * * * *
3800 ACATTGCTCGAACA-AACGGATCATCTTGAATACTTTATTGAACTGAATTTATAACAGAAATAGT
322 A-ATTGCTCGAA-AGAATGGATCGTCTTGAATACTTTAAGGAAC-CAAGTTATAAAAGAACTCGT
** * * * * *
3864 AAAAGTTTTCCTAGTTTGAAAGTTCGTCCAAGAACCAAGAGATAAACAATT-TACACATAAATAA
384 AAAAGTTTGACAAG-TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAA
* ** * * * * *
3928 GTATTTAATTCAGTGACCACAAGTTTTTTTA-AGAAATGGCAAACTATTTTGACCGAATGATGCG
447 GTTTTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCG
* * * * * * * *
3992 ATTTCCCGAGCATTGAATG-TTCAGAATATTGCTCGAAGGATTGGATCATCTTGAATAGTTTAAG
510 ATTTCTCGAGCATGGAATGTTTC-GAAAATTGCTCGTAGAAATGGATCGTCTTGAATACTTTAAG
* * * * * * ** * **
4056 CAACCGAAGTTATTAGAGGAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTGTCTAAGAATGA
574 GAACCGAAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCA
* * * * *
4121 AAAGAGAAATAATTCTCACATAAATATA-TTTTTAATTCCAGGACCAAAAAGTTGTTTCCAAAAT
636 AGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAAT
** * ** *
4185 GACAGCCTATTTAGACCGAATGATGCTATTTCCCGAGCACAGAATGTTCGGAATATTGATCGAAG
699 GACAAACTATTTAGACCGAATGATGCGATTT-CCGAGCATGGAATGTTC-GAAAATTG-TCGAAG
*
4250 GAATGGATCGTCT-T-GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGAC
761 GAATGGATCGTCTATAGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAAAGTTTGAC
* * *
4313 CAGTTCAAAAGTTCATCTAAGAACCAA-AGGAGAAAC
825 AAGTTCAGAAGTTCGTCTAAGAACCAAGA-GAGAAAC
* ** * *
4349 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATT
1 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATT
* * * * * * * * * *
4414 TAGACCAAAAGATGCAACTTCTCGAGCATGAAATGTTTGGAAAATTGCTCGTAGAAACGGATGGT
65 TAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGT
* * * * * * *
4479 CTTGAATACTTTAAGGAACCGAAGTTGTAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTC
130 CTAGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
* * * * * * *
4544 GTCCAAGAACCAAGAGAGAGATAATTTTCACATAAATAAGTTTTTAATTCAAAGGCCAAAAGTTG
195 ATTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * **
4609 TTTACAAAATGACAAACTATTTAAACCAAAAGATTCGATTTC-CGGAAAATGGAATG-TTCGAAA
260 TTTAC-AAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTTCGAAA
* * * * * * *
4672 ATTGCTCG-ATGATGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAAC
323 ATTGCTCGAAAGA-ATGGATC--GTCT-T-GAAT--ACTTTAAGGAACC-AAGTTATAAAAGAAC
* * * * * * * *
4736 TTGTAAAAGTTTGACAACTCCGGACGTTCGTCCAAGAAGCAAGAAAGAAACAAATCCCACGTCAA
380 TCGTAAAAGTTTGACAAGT-CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* *
4801 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTTAGATCAAATGATGC
444 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * * * *
4866 GATTT-TCCGAACGTTGAATG-TTCGAAAAATTTG-TAGAAGGAATGGATC-TCATAGAATGCTT
509 GATTTCT-CGAGCATGGAATGTTTCG-AAAA-TTGCTCGTAGAAATGGATCGTC-TTGAATACTT
* * * * *
4927 TGAGGAACCTAAGTTGTAAAAGGACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACT
570 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACC
** *
4992 AAGAGAGAAACAATTCTCATGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
635 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
*
5057 ACAAAATATTTAGACCGAATGATGCGATTTCTCGAGCAT
700 ACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCAT
Statistics
Matches: 3419, Mismatches: 661, Indels: 290
0.78 0.15 0.07
Matches are distributed among these distances:
863 28 0.01
864 7 0.00
865 10 0.00
866 203 0.06
867 811 0.24
868 380 0.11
869 455 0.13
870 484 0.14
871 216 0.06
872 326 0.10
873 122 0.04
874 18 0.01
875 170 0.05
876 189 0.06
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (860 bp):
AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTC
TAGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCA
TTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
TTACAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTCGAAAATT
GCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAAGTTATAAAAGAACTCGTAAAAGTT
TGACAAGTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGC
ATGGAATGTTTCGAAAATTGCTCGTAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
TCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
GAATGATGCGATTTCCGAGCATGGAATGTTCGAAAATTGTCGAAGGAATGGATCGTCTATAGAAT
ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCTAAG
AACCAAGAGAGAAAC
Done.