genome.fa.s11959.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011959.1 Kokia drynarioides strain JFW-HI SEQ_126957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  397225

Tables:   1   2   

This is table  1  of  2  ( 132 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--36	2	12.5	2	100	0	50	48	0	0	52	1.00
105--136	11	2.9	11	100	0	64	28	0	6	65	1.16
152--200	19	2.4	22	80	16	61	34	0	8	57	1.29
600--633	16	2.1	16	100	0	68	52	5	0	41	1.25
3972--4010	2	19.5	2	100	0	78	0	0	48	51	1.00
4287--4407	19	6.4	19	71	14	88	23	23	23	29	1.99
4287--4407	57	2.1	57	83	8	149	23	23	23	29	1.99
6703--6753	20	2.5	20	90	9	77	23	33	13	29	1.93
8542--8674	38	3.5	38	79	6	144	25	21	21	30	1.98
12105--12130	3	8.7	3	100	0	52	34	0	30	34	1.58
25789--25823	18	1.9	18	88	0	52	20	20	28	31	1.97
30486--30514	14	2.0	15	93	6	51	0	48	0	51	1.00
41828--41887	28	2.1	29	90	3	95	28	21	13	36	1.91
46035--46220	88	2.1	88	97	0	354	32	15	12	39	1.85
48042--48164	37	3.3	37	80	12	119	47	5	3	43	1.43
48144--48174	3	10.0	3	93	6	53	35	0	0	64	0.94
52786--52812	2	13.5	2	100	0	54	48	51	0	0	1.00
55764--56029	89	3.0	84	80	10	277	45	16	7	30	1.74
56132--56281	10	15.3	9	67	21	54	61	2	4	32	1.26
56247--56285	19	2.0	20	85	9	55	48	2	2	46	1.29
56482--56778	9	30.8	10	61	17	74	32	5	1	60	1.26
56594--56660	30	2.3	30	92	2	109	34	1	0	64	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56631--56669	20	2.0	19	85	14	53	41	2	0	56	1.13
56607--56690	29	2.8	29	81	5	78	36	1	1	60	1.12
56665--56710	19	2.3	20	81	7	58	28	6	2	63	1.31
56544--56810	137	1.9	137	96	1	491	33	4	1	60	1.26
56707--56769	19	3.3	19	75	16	58	38	3	0	58	1.14
56725--56797	30	2.4	29	82	10	85	35	1	1	61	1.13
56891--57125	93	2.6	92	80	9	257	34	9	17	38	1.83
57202--57271	29	2.3	29	85	4	86	35	8	12	42	1.74
57202--57281	31	2.6	30	84	5	90	33	7	12	46	1.70
57521--57605	31	2.8	30	80	5	100	41	12	10	35	1.78
58940--59013	23	3.2	23	78	3	78	43	14	16	25	1.86
69337--69452	59	2.0	59	96	0	214	31	11	19	37	1.87
70386--70503	4	29.5	4	84	0	110	39	1	10	48	1.47
70392--70505	8	14.8	8	84	7	137	38	0	11	49	1.45
102350--102414	32	2.1	30	85	5	85	64	9	9	16	1.48
113367--113441	27	2.8	27	83	0	96	32	14	24	29	1.95
113598--113660	27	2.4	28	78	10	69	33	17	20	28	1.95
124016--124066	21	2.5	20	81	9	66	9	15	31	43	1.80
124075--124115	21	1.9	22	85	5	57	19	7	24	48	1.74
126319--126686	200	1.8	200	84	2	506	32	20	16	30	1.95
135784--135822	21	1.9	21	89	5	62	12	12	7	66	1.43
137188--137220	15	2.3	15	90	10	52	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142171--142203	17	1.9	17	93	0	57	60	12	12	15	1.59
142625--142665	15	2.6	16	81	14	50	12	39	0	48	1.41
152785--152822	16	2.3	17	86	4	51	18	0	7	73	1.06
154262--154286	13	1.9	13	100	0	50	80	0	0	20	0.72
158059--158161	50	2.1	50	88	0	152	33	12	18	34	1.89
158711--158758	3	16.0	3	95	0	87	64	2	0	33	1.05
161726--161895	23	7.5	23	72	7	114	5	4	19	70	1.24
161756--161870	12	10.6	10	75	16	81	5	3	20	71	1.20
161726--161894	44	3.8	45	80	10	150	5	4	19	70	1.25
161741--161898	33	4.7	33	75	14	126	5	3	20	69	1.25
161787--161898	12	9.7	12	78	9	99	6	3	20	69	1.25
161805--161915	45	2.5	44	86	7	136	9	2	18	69	1.28
162030--162060	15	2.0	16	93	6	55	35	0	0	64	0.94
163094--163119	2	13.0	2	100	0	52	50	0	0	50	1.00
166817--166856	19	2.0	20	85	4	55	40	15	15	30	1.87
167990--168030	21	1.9	22	85	5	57	29	24	26	19	1.98
173342--173632	52	5.6	52	84	0	350	29	14	21	35	1.93
179771--179916	72	2.0	72	90	2	231	30	23	15	29	1.96
182183--182297	57	2.0	57	89	0	176	34	11	11	42	1.77
186653--186695	21	2.0	21	86	0	59	48	20	18	11	1.79
187200--187304	18	5.8	18	81	1	120	30	23	21	23	1.99
188647--188689	21	2.0	22	86	4	61	20	4	23	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193294--193326	2	16.5	2	93	0	57	51	0	48	0	1.00
193629--193657	3	9.7	3	100	0	58	65	0	0	34	0.93
212667--213037	49	7.5	49	68	13	224	37	17	25	19	1.93
212651--213074	99	4.3	98	80	4	476	37	17	25	19	1.93
212651--213074	197	2.2	195	82	4	503	37	17	25	19	1.93
213169--213392	103	2.2	102	81	2	252	37	17	15	29	1.91
224867--224954	44	2.0	44	100	0	176	38	9	20	31	1.84
225865--225981	27	4.3	27	90	0	153	23	19	23	33	1.97
229917--230339	218	1.9	219	87	5	613	30	16	15	36	1.91
233547--233578	11	2.9	11	95	0	55	62	25	9	3	1.40
241854--241938	39	2.2	39	81	12	104	23	27	25	23	2.00
241915--243093	39	30.3	39	70	10	588	24	31	18	25	1.98
241915--242709	195	4.1	195	78	6	718	24	30	18	26	1.98
242497--243128	156	4.1	154	82	4	707	24	31	19	25	1.98
241915--243090	195	6.0	190	72	12	701	24	30	18	25	1.98
242497--243083	311	1.9	311	85	2	813	24	30	19	25	1.98
256504--256545	21	2.0	21	85	0	57	26	14	16	42	1.86
260625--261009	197	1.9	199	92	1	639	26	17	16	38	1.91
263998--264095	20	4.8	19	71	19	65	42	2	2	53	1.24
264017--264102	20	4.2	20	77	8	77	39	1	3	55	1.24
264952--265040	8	10.8	8	75	11	72	43	0	1	55	1.07
264951--265036	23	3.5	24	77	16	86	45	0	1	53	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264988--265073	20	4.3	19	77	18	77	37	1	4	56	1.27
269847--269892	23	2.0	23	82	4	56	32	13	8	45	1.73
270337--270458	50	2.5	50	84	6	151	27	16	9	46	1.77
275662--275710	15	3.3	15	83	11	64	30	24	20	24	1.98
275649--275704	15	3.7	15	81	9	60	30	26	19	23	1.98
284786--284840	21	2.7	20	75	8	56	41	32	7	18	1.78
286552--286601	20	2.5	20	81	15	50	42	16	0	42	1.47
288723--288779	3	17.7	3	86	13	78	36	0	0	63	0.95
290046--290309	79	3.4	79	87	0	350	33	13	8	44	1.75
293945--294085	66	2.2	66	97	1	266	43	12	21	21	1.86
302615--302649	16	2.2	16	100	0	70	62	11	8	17	1.52
303469--303512	21	2.1	21	95	0	79	25	6	4	63	1.38
305658--305723	33	2.0	33	93	0	114	40	6	21	31	1.77
306885--306910	13	2.0	13	100	0	52	0	15	0	84	0.62
306882--306920	19	2.1	19	85	9	53	2	15	0	82	0.79
307970--308002	12	2.8	12	95	0	57	0	27	0	72	0.85
316653--316743	45	2.0	45	82	0	110	19	19	21	38	1.94
317910--318000	32	2.8	31	88	6	137	63	12	0	24	1.28
318241--318306	33	2.0	33	82	5	80	30	9	39	21	1.84
324271--324351	40	2.0	40	100	0	162	39	20	14	24	1.91
340109--340149	15	2.5	17	88	7	59	70	0	7	21	1.11
341063--341184	40	3.2	39	71	13	117	24	19	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341016--341197	76	2.4	76	82	0	229	24	19	22	34	1.97
343549--343616	33	2.1	33	100	0	136	41	5	20	32	1.76
343827--343869	21	2.0	21	90	0	68	32	11	11	44	1.77
364140--364305	54	3.1	54	91	1	253	27	9	11	51	1.68
366004--366120	23	5.1	23	82	4	137	31	17	23	27	1.97
368326--368596	82	3.3	82	83	6	316	36	6	23	32	1.81
368326--368606	28	10.2	28	83	6	274	35	7	24	33	1.83
369444--369478	14	2.5	14	90	0	52	37	20	11	31	1.88
370920--370966	20	2.3	20	92	0	76	80	4	4	10	0.98
377264--377755	243	2.0	243	97	0	921	38	19	10	31	1.86

Tables:   1   2