genome.fa.s11960.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011960.1 Kokia drynarioides strain JFW-HI SEQ_126958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102039

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2537--2569	17	1.9	18	88	11	52	48	0	9	42	1.35
2559--2604	23	2.0	23	82	0	56	43	0	8	47	1.34
6955--7226	41	6.6	41	84	1	330	32	17	28	21	1.96
6951--7226	123	2.2	123	85	0	372	32	17	28	21	1.96
7169--7289	63	1.9	63	91	0	197	34	17	27	20	1.95
7232--7539	41	7.5	41	79	4	280	33	16	27	23	1.95
7139--7333	104	1.9	104	88	2	293	33	17	27	21	1.95
7087--7371	145	2.0	145	86	4	396	33	17	27	20	1.96
7045--7387	186	1.8	186	92	0	578	33	18	28	20	1.96
7232--7510	123	2.3	123	85	2	364	33	16	27	22	1.96
10935--11090	43	3.7	43	73	10	122	26	19	23	29	1.98
11257--11413	43	3.7	43	76	10	149	26	19	23	29	1.98
14643--14688	24	1.9	25	86	8	69	34	4	6	54	1.46
25710--25804	18	5.2	18	77	6	75	28	16	23	31	1.96
25755--25813	18	3.3	18	77	17	68	23	22	22	32	1.98
25752--25806	18	3.1	18	82	10	76	25	20	21	32	1.97
25710--25821	36	3.1	36	75	6	109	27	18	23	30	1.98
26406--26456	25	2.0	26	85	7	70	29	7	23	39	1.83
33149--33366	109	2.0	108	98	0	418	31	27	16	24	1.96
45386--45419	17	1.9	18	94	5	61	17	17	38	26	1.92
45387--45428	17	2.4	18	84	8	59	14	23	38	23	1.92
45381--45459	18	4.4	18	79	4	70	21	21	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46026--46076	24	2.0	26	88	7	79	25	13	23	37	1.92
49208--49421	102	2.1	102	85	0	284	40	15	12	31	1.84
53337--53540	42	4.9	42	77	6	164	38	11	24	25	1.89
63157--63238	17	4.8	17	71	13	60	24	15	8	51	1.72
63157--63236	34	2.3	33	83	10	90	25	16	8	50	1.73
65162--65198	16	2.3	16	95	0	65	27	8	8	56	1.56
65579--65611	5	6.8	5	96	3	59	63	0	0	36	0.95
67211--67254	18	2.4	18	88	0	61	11	0	11	77	1.00
70239--70295	21	2.5	23	80	11	64	8	10	15	64	1.48
70414--70466	22	2.5	22	81	6	65	22	13	3	60	1.49
73970--74022	24	2.2	24	82	0	61	7	7	20	64	1.44
73988--74071	12	7.3	12	71	10	59	7	2	19	71	1.20
73994--74068	32	2.3	32	83	2	87	6	2	18	72	1.19
75022--75060	21	1.9	19	90	10	60	69	0	5	25	1.09
77659--77715	25	2.2	26	79	17	66	66	1	0	31	1.02
77674--77723	14	3.5	14	75	21	50	68	0	0	32	0.90
80490--80528	12	3.2	12	85	3	51	15	2	7	74	1.15
84975--85000	13	2.0	13	100	0	52	15	15	0	69	1.20
84979--85082	51	2.1	49	85	3	136	28	18	5	47	1.71
86281--86432	35	4.3	35	70	11	114	29	29	5	35	1.79
88426--88477	23	2.4	22	83	6	61	65	3	7	23	1.35
95470--95621	75	2.0	75	94	0	268	51	15	5	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96750--96798	19	2.5	19	87	9	64	42	0	2	55	1.11
97199--97672	126	3.7	123	74	12	403	28	18	20	32	1.97
97082--97672	266	2.2	260	83	6	728	28	18	20	31	1.96
97989--98070	34	2.4	35	83	8	105	41	35	3	19	1.69
98398--98788	36	10.9	36	78	7	384	26	20	15	37	1.93
98391--98780	73	5.5	68	76	9	221	26	20	15	37	1.93
98391--98486	33	2.8	33	78	12	95	26	19	15	38	1.92
98402--98800	71	5.6	70	78	7	331	26	21	15	37	1.93
98407--98799	144	2.7	143	81	5	447	26	20	15	37	1.93
98398--98776	109	3.5	109	79	7	391	26	21	15	37	1.93
98919--98951	15	2.1	16	88	5	50	15	3	3	78	0.99
99191--99519	37	8.7	35	70	17	155	26	19	16	38	1.92
99191--99397	73	2.8	72	83	2	243	25	19	16	38	1.92
99352--99446	49	2.0	48	83	6	120	29	17	13	38	1.89
99279--99524	122	2.0	122	83	1	305	26	18	16	38	1.92
99412--99564	36	4.2	37	77	8	143	25	17	15	41	1.89
99403--99564	73	2.2	74	82	5	186	25	17	16	40	1.90
99551--99605	29	1.9	28	85	3	74	27	23	12	36	1.91

Tables:   1

The End!