Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011964.1 Kokia drynarioides strain JFW-HI SEQ_126962, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3009
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35


Found at i:1166 original size:55 final size:55

Alignment explanation


    Indices: 1096--1204  Score: 191
    Period size: 55  Copynumber: 2.0  Consensus size: 55

       1086 GTGTATGTTG

                                      *                            
       1096 ATGATTTAAATATCATTAAGACTCCTGAAGAAAATTTAGTGATAATGGAGTGCTA
          1 ATGATTTAAATATCATTAAGACTCCTAAAGAAAATTTAGTGATAATGGAGTGCTA

                                   *       *                      
       1151 ATGATTTAAATATCATTAAGACTGCTAAAGAGAATTTAGTGATAATGGAGTGCT
          1 ATGATTTAAATATCATTAAGACTCCTAAAGAAAATTTAGTGATAATGGAGTGCT

       1205 TAAAGAAAGA


Statistics
Matches: 51,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  55   51  1.00

ACGTcount: A:0.39, C:0.08, G:0.19, T:0.33


Consensus pattern (55 bp):   
ATGATTTAAATATCATTAAGACTCCTAAAGAAAATTTAGTGATAATGGAGTGCTA

Found at i:2082 original size:17 final size:17

Alignment explanation


    Indices: 2062--2102  Score: 64
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       2052 TCCTTTGACG

                             
       2062 TTTAACCTTCCATATTC
          1 TTTAACCTTCCATATTC

                     *       
       2079 TTTAACCTTTCATATTC
          1 TTTAACCTTCCATATTC

                   
       2096 TTGTAAC
          1 TT-TAAC

       2103 TACTTTGTCC


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  17   18  0.82
  18    4  0.18

ACGTcount: A:0.24, C:0.24, G:0.02, T:0.49


Consensus pattern (17 bp):   
TTTAACCTTCCATATTC
Done.