Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011971.1 Kokia drynarioides strain JFW-HI SEQ_126969, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8907
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1449 original size:2 final size:2

Alignment explanation


    Indices: 1442--1483  Score: 75
    Period size: 2  Copynumber: 21.0  Consensus size: 2

       1432 TGGTCCCAAC

                                                                  *       
       1442 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1484 GGTGCACTTG


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   38  1.00

ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50


Consensus pattern (2 bp):   
AT

Done.