genome.fa.s11972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011972.1 Kokia drynarioides strain JFW-HI SEQ_126970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54884

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3936--3971	16	2.2	16	100	0	72	72	11	11	5	1.28
4779--4868	48	1.9	45	84	10	119	50	5	16	27	1.68
4838--4876	6	6.3	6	94	5	69	66	0	17	15	1.25
18188--18319	41	3.2	41	87	1	183	40	8	25	25	1.84
20053--20104	25	2.2	21	71	25	50	21	9	25	44	1.82
20205--20256	23	2.4	22	83	6	61	57	0	3	38	1.17
21318--21687	30	12.8	29	71	16	236	32	28	5	34	1.79
21340--21561	59	3.9	57	75	14	210	34	27	4	33	1.78
21435--21480	21	2.2	21	88	0	65	41	28	2	28	1.68
21375--21523	81	1.9	80	85	4	210	37	26	3	32	1.73
28506--28755	100	2.5	100	88	0	376	35	19	26	18	1.95
28704--29028	49	6.6	49	74	10	207	39	19	25	15	1.91
28743--28923	97	1.8	98	83	4	240	40	18	24	15	1.90
28561--29037	49	9.7	49	68	11	190	38	18	25	17	1.93
29123--29304	101	1.8	101	84	7	253	34	17	17	30	1.93
29386--29612	39	5.8	39	71	11	169	26	32	18	22	1.97
29391--29614	78	2.9	78	82	4	283	25	32	19	23	1.97
29684--30598	205	4.5	205	92	1	1430	35	19	22	21	1.96
32820--33360	29	18.4	29	75	9	438	34	27	4	33	1.78
32841--33396	30	18.9	29	74	10	353	34	27	4	32	1.78
32820--33360	59	9.2	58	83	5	547	34	27	4	33	1.78
33289--33419	59	2.2	58	80	10	142	34	25	6	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33656--33837	96	1.9	96	83	6	235	31	19	12	36	1.88
34788--34816	14	2.0	15	93	6	51	68	0	0	31	0.89
35639--35671	17	2.0	17	88	5	50	60	15	0	24	1.35
45404--45463	27	2.2	27	93	3	102	18	15	8	58	1.61
46076--46403	146	2.2	154	85	7	442	35	21	19	22	1.96
46898--46990	18	5.2	18	76	7	91	39	2	6	51	1.40
46906--46988	6	13.8	6	71	12	55	42	2	4	50	1.36
46904--46998	17	5.5	17	77	13	88	43	2	5	49	1.37
46992--47030	14	2.7	14	88	4	51	43	17	5	33	1.72
47702--47824	36	3.4	36	73	13	92	56	2	3	37	1.28
47793--47841	10	4.9	10	75	9	55	53	2	0	44	1.12
47793--47841	20	2.5	20	93	6	82	53	2	0	44	1.12
47703--47825	3	39.3	3	69	13	61	56	2	3	37	1.28
48664--48873	58	3.6	58	76	11	187	33	31	2	31	1.73
48718--48901	29	6.3	29	68	15	96	31	31	4	32	1.79
48664--48778	29	4.0	28	84	6	133	35	32	1	30	1.68
51500--51528	15	1.9	15	100	0	58	75	10	6	6	1.17
54298--54360	17	3.7	17	89	0	90	44	0	3	52	1.17
54400--54441	15	2.8	15	81	0	57	40	21	19	19	1.92

Tables:   1

The End!