Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011979.1 Kokia drynarioides strain JFW-HI SEQ_126977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3421
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.39

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:2202 original size:103 final size:103

Alignment explanation


    Indices: 2095--2301  Score: 396
    Period size: 103  Copynumber: 2.0  Consensus size: 103

       2085 TTTTTTTGTC

                                                            *                
       2095 ATTATAGTAAAATTATATTTGTCCATGGTTTTTTATACTCTTTGGAGGGGGTTTTTCACGTTAAA
          1 ATTATAGTAAAATTATATTTGTCCATGGTTTTTTATACTCTTTGGAGGAGGTTTTTCACGTTAAA

                                                  
       2160 TTTGTGTGTTCAATTTCTCAATTTCTTCCGCTATTTTT
         66 TTTGTGTGTTCAATTTCTCAATTTCTTCCGCTATTTTT

                                                                             
       2198 ATTATAGTAAAATTATATTTGTCCATGGTTTTTTATACTCTTTGGAGGAGGTTTTTCACGTTAAA
          1 ATTATAGTAAAATTATATTTGTCCATGGTTTTTTATACTCTTTGGAGGAGGTTTTTCACGTTAAA

                                        *         
       2263 TTTGTGTGTTCAATTTCTCAATTTCTTCTGCTATTTTT
         66 TTTGTGTGTTCAATTTCTCAATTTCTTCCGCTATTTTT

             
       2301 A
          1 A

       2302 CTTGTTGGTT


Statistics
Matches: 102,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 103  102  1.00

ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51


Consensus pattern (103 bp):   
ATTATAGTAAAATTATATTTGTCCATGGTTTTTTATACTCTTTGGAGGAGGTTTTTCACGTTAAA
TTTGTGTGTTCAATTTCTCAATTTCTTCCGCTATTTTT

Found at i:2830 original size:3 final size:3

Alignment explanation


    Indices: 2822--2846  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       2812 NNNNNNNNNN

                                             
       2822 TAT TAT TAT TAT TAT TAT TAT TAT T
          1 TAT TAT TAT TAT TAT TAT TAT TAT T

       2847 CTATTTTAAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TAT

Done.