genome.fa.s11983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011983.1 Kokia drynarioides strain JFW-HI SEQ_126981, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94486

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23--72	26	1.9	26	87	0	73	42	2	14	42	1.56
4629--4672	16	2.8	16	78	0	52	50	2	2	45	1.27
5608--5647	20	2.0	20	100	0	80	60	5	0	35	1.19
5617--5658	10	4.2	10	76	11	50	61	7	0	30	1.22
5610--5654	20	2.3	20	92	3	74	64	4	0	31	1.13
16898--17033	56	2.4	56	84	6	186	68	15	4	11	1.35
16897--16989	44	2.1	44	84	4	116	69	15	3	11	1.30
17782--17811	5	6.0	5	92	0	51	56	0	0	43	0.99
17859--17905	19	2.4	21	79	17	64	46	34	0	19	1.50
18474--18533	29	2.2	29	85	8	81	31	1	23	43	1.64
18815--18940	30	4.2	30	81	4	155	39	21	4	34	1.74
21611--21647	18	2.1	18	89	0	56	29	0	0	70	0.88
22925--22972	25	1.9	25	83	8	62	54	10	16	18	1.70
23506--23913	204	2.0	206	88	1	604	37	21	11	28	1.89
28852--29043	96	2.0	96	83	8	239	36	12	20	30	1.90
29321--29555	30	8.0	30	71	8	142	34	4	29	32	1.77
29402--29575	30	5.9	29	80	9	183	33	4	31	31	1.76
29389--29570	89	2.0	89	85	6	244	32	3	30	32	1.76
29402--29572	59	2.9	59	86	4	231	33	4	29	32	1.76
30198--30375	79	2.3	78	81	2	205	14	39	26	19	1.90
30198--30430	78	3.0	78	78	2	234	15	40	23	20	1.90
31391--31479	6	15.3	6	72	18	64	50	2	2	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31383--31479	23	4.0	23	71	18	79	51	2	2	44	1.24
31398--31480	17	4.9	17	85	5	105	50	2	2	44	1.28
31398--31480	34	2.4	34	87	0	121	50	2	2	44	1.28
31908--32452	218	2.6	218	83	5	658	20	20	21	36	1.95
32938--32999	28	2.2	28	88	2	88	56	6	16	20	1.62
34863--35331	29	16.1	28	71	18	266	36	29	3	30	1.75
34868--35331	59	7.9	56	76	11	251	36	29	3	30	1.75
34899--35328	118	3.7	116	83	7	496	36	29	3	30	1.75
34899--35328	177	2.4	175	86	5	582	36	29	3	30	1.75
35656--35848	97	2.0	96	83	7	239	29	19	14	37	1.91
52972--53024	23	2.3	22	81	15	63	52	0	1	45	1.11
53338--53398	31	2.0	31	83	0	77	42	16	9	31	1.81
54577--54639	32	2.0	32	83	0	81	42	4	7	44	1.54
56930--56995	29	2.3	29	94	0	114	42	22	16	18	1.89
62378--62628	128	2.0	129	82	4	310	32	11	7	48	1.67
66743--66773	10	3.0	10	95	4	53	87	12	0	0	0.55
75400--75491	31	3.0	31	82	6	89	52	1	4	42	1.28
75438--75498	31	2.0	31	90	0	95	47	0	9	42	1.36
78340--78652	104	3.0	104	96	0	590	29	10	23	37	1.87
85452--85477	5	5.2	5	100	0	52	0	0	38	61	0.96
86612--86777	10	17.9	9	65	18	56	63	0	3	33	1.14
86629--86765	28	4.8	27	73	15	98	62	0	2	33	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87012--87090	10	8.6	9	74	14	54	29	2	3	64	1.24
87012--87090	19	4.3	18	75	15	81	29	2	3	64	1.24
87021--87090	9	7.7	9	72	15	63	31	1	2	64	1.17
87089--87144	27	2.0	29	86	6	80	44	3	0	51	1.18
87913--87972	24	2.5	24	83	2	68	28	6	18	46	1.74
88007--88046	21	1.9	21	89	0	62	55	10	10	25	1.64
89998--90149	60	2.5	60	77	4	173	50	11	15	23	1.75

Tables:   1

The End!