Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011986.1 Kokia drynarioides strain JFW-HI SEQ_126984, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4292
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36

Warning! 4 characters in sequence are not A, C, G, or T


Found at i:523 original size:20 final size:21

Alignment explanation


    Indices: 477--524  Score: 53
    Period size: 20  Copynumber: 2.3  Consensus size: 21

        467 ATTTTATTGT

                                 
        477 TTTAAATAATTTATGGGTAAA
          1 TTTAAATAATTTATGGGTAAA

            **      *       *    
        498 AATAAATATTTTA-GGTTAAA
          1 TTTAAATAATTTATGGGTAAA

                   
        518 TTTAAAT
          1 TTTAAAT

        525 TTAAAAATAA


Statistics
Matches: 21,  Mismatches: 6, Indels: 1
        0.75            0.21        0.04

Matches are distributed among these distances:
  20   11  0.52
  21   10  0.48

ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44


Consensus pattern (21 bp):   
TTTAAATAATTTATGGGTAAA
Done.