genome.fa.s11989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011989.1 Kokia drynarioides strain JFW-HI SEQ_126987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  186767

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259--292	17	2.0	17	94	0	59	5	8	41	44	1.60
2399--2430	16	2.0	16	93	0	55	15	25	34	25	1.95
5522--5624	30	3.5	28	71	19	77	34	1	27	35	1.68
5531--5618	30	3.0	30	79	12	110	35	2	27	35	1.70
5485--5957	59	8.0	58	83	6	474	31	1	29	36	1.68
5551--5961	29	14.0	29	76	8	368	32	1	29	36	1.68
5540--5957	118	3.5	118	82	7	542	32	1	29	36	1.67
17030--17450	59	7.1	59	79	9	376	33	2	29	34	1.72
16962--17450	118	4.1	115	79	10	402	33	2	29	34	1.72
17043--17450	29	13.8	29	79	8	360	34	2	29	34	1.70
17053--17404	30	11.8	30	79	8	120	34	2	29	34	1.71
19170--19214	23	2.0	23	91	8	74	51	0	0	48	1.00
22223--22285	31	2.0	31	84	0	81	36	14	12	36	1.84
25699--25727	13	2.1	14	93	6	51	82	0	17	0	0.66
25697--25730	17	2.1	16	88	5	50	82	0	17	0	0.67
27662--27712	17	3.0	16	83	11	57	66	3	1	27	1.20
27662--27715	18	3.1	17	80	17	58	64	3	1	29	1.21
32780--32809	13	2.2	14	94	5	53	13	0	13	73	1.10
33216--33640	42	10.5	40	77	11	402	25	14	27	32	1.95
33216--33640	81	5.3	79	80	7	423	25	14	27	32	1.95
33216--33640	121	3.5	121	80	10	413	25	14	27	32	1.95
33660--34167	93	5.3	94	74	9	373	25	22	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33750--34276	99	5.5	99	72	11	357	25	21	17	35	1.95
33661--34258	192	3.2	192	88	2	818	26	21	17	34	1.95
34478--34686	49	4.3	49	75	3	172	22	25	16	35	1.94
34478--34735	98	2.6	98	81	3	270	21	24	17	37	1.94
34503--34777	49	5.6	49	76	2	176	20	25	15	38	1.92
35219--35431	112	1.9	112	84	0	282	39	12	18	29	1.88
35738--35788	19	2.7	18	75	22	50	1	15	3	78	0.99
35948--36010	31	2.0	31	100	0	126	28	22	17	31	1.96
40268--40327	25	2.6	24	84	10	81	75	1	8	15	1.12
41235--41259	6	4.2	6	100	0	50	84	0	0	16	0.63
41682--41710	13	2.1	14	93	6	51	13	0	13	72	1.13
42425--42466	15	2.9	15	76	23	54	38	9	16	35	1.81
43528--43576	25	2.0	25	100	0	98	48	12	22	16	1.79
48929--48969	20	2.0	20	100	0	82	19	14	19	46	1.84
61953--62659	259	2.7	259	95	0	1279	29	26	14	30	1.95
65144--65175	3	10.7	3	100	0	64	68	0	0	31	0.90
66349--66390	17	2.4	17	80	15	50	23	23	0	52	1.47
66495--66522	8	3.5	8	100	0	56	25	25	0	50	1.50
71725--71790	33	2.0	33	100	0	132	54	6	12	27	1.60
72557--72600	16	2.7	16	78	3	52	68	2	0	29	1.02
72951--72992	21	2.0	21	86	9	59	54	0	0	45	0.99
73164--73208	19	2.5	19	85	7	58	51	4	0	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73364--73416	17	3.3	17	73	17	51	75	3	3	16	1.10
73605--73671	23	2.9	24	82	12	79	29	34	16	19	1.94
73605--73659	12	4.8	12	73	6	51	32	34	14	18	1.91
74709--74778	17	4.1	17	75	0	77	41	2	4	51	1.36
75400--75451	3	17.0	3	76	11	52	65	1	0	32	1.04
75414--75458	14	3.1	14	87	3	63	71	4	0	24	1.05
76602--76667	30	2.2	29	81	7	78	37	19	3	39	1.67
76613--76737	30	4.2	30	75	6	103	35	17	2	44	1.62
76673--76924	117	2.2	117	80	9	275	32	26	3	37	1.74
76673--77046	59	6.4	59	80	8	288	33	25	4	36	1.77
76702--77065	117	3.1	116	79	8	366	33	25	4	35	1.78
76727--77066	29	11.7	29	65	18	120	33	26	5	34	1.78
80943--80980	18	2.1	19	85	5	51	23	26	15	34	1.95
88940--89682	49	15.2	48	71	7	423	37	18	26	18	1.93
88919--89683	98	7.8	98	85	3	930	36	17	26	18	1.93
90087--90156	17	4.1	17	75	0	77	41	2	4	51	1.36
92003--92324	29	11.0	29	70	12	169	33	25	3	36	1.73
92005--92345	59	5.8	59	83	4	354	34	26	3	36	1.73
92004--92345	118	2.9	116	82	3	391	33	26	3	36	1.72
92041--92345	29	10.4	30	69	17	176	34	26	3	36	1.73
92009--92345	177	1.9	174	82	6	419	34	25	3	36	1.73
92471--92508	20	1.9	20	88	0	58	36	10	5	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126418--126504	23	3.8	24	77	10	92	51	16	24	8	1.70
130179--130323	73	2.0	73	100	0	290	41	5	20	33	1.75
136476--136519	22	2.0	22	100	0	88	50	0	13	36	1.42
136785--137000	41	5.2	41	84	4	258	36	10	26	26	1.89
136785--137000	82	2.6	83	87	3	294	36	10	26	26	1.89
137639--137679	21	2.0	21	85	9	57	29	17	21	31	1.96
166669--166916	37	6.7	37	86	4	331	33	32	20	12	1.91
166774--166839	16	3.8	16	69	18	51	31	31	22	13	1.93
166679--166860	21	9.6	20	64	24	83	34	32	20	12	1.91
166669--166916	111	2.2	111	89	2	365	33	32	20	12	1.91
172379--172413	10	3.5	10	88	0	52	60	5	14	20	1.54
177712--177795	41	2.0	41	88	4	125	29	3	14	52	1.58
182926--183073	23	6.5	21	79	11	109	12	24	20	43	1.86
182927--183073	69	2.1	69	84	12	187	12	24	19	43	1.85
185654--185778	23	5.5	23	73	16	91	45	20	21	12	1.83
186650--186740	34	2.7	34	96	1	166	8	31	4	54	1.51

Tables:   1

The End!