genome.fa.s11991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011991.1 Kokia drynarioides strain JFW-HI SEQ_126989, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106967

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--25	2	12.5	2	100	0	50	48	0	0	52	1.00
1225--1267	3	14.3	3	100	0	86	32	0	0	67	0.91
3340--3368	2	14.5	2	100	0	58	51	0	0	48	1.00
3795--3867	10	7.7	9	70	11	56	32	2	2	61	1.24
3792--3867	19	3.9	19	72	6	64	34	2	3	59	1.30
3835--3879	19	2.4	19	85	3	56	37	2	4	55	1.32
3979--4052	25	3.0	23	81	15	76	24	1	6	67	1.22
3988--4052	25	2.6	25	85	11	80	24	0	6	69	1.11
4015--4053	17	2.3	18	86	8	55	20	0	5	74	1.01
6602--6656	20	2.7	19	77	8	56	49	0	3	47	1.19
6706--6794	39	2.2	40	80	7	101	55	3	8	32	1.48
6792--6847	10	5.7	10	80	19	57	55	0	1	42	1.10
6805--6844	19	2.2	18	86	13	55	57	0	0	42	0.98
6799--6862	29	2.2	29	80	8	67	56	0	1	42	1.09
7158--7201	21	2.1	21	83	8	54	34	2	0	63	1.07
13877--14892	339	3.0	339	94	0	1780	23	22	18	35	1.95
17207--17248	12	3.5	12	83	0	57	26	11	21	40	1.88
17196--17248	24	2.2	25	93	3	90	28	13	16	41	1.86
18196--18338	71	2.0	71	95	0	259	42	6	20	29	1.78
24264--24348	44	1.9	44	85	0	116	38	9	3	48	1.53
24665--24722	25	2.3	25	85	11	75	53	0	1	44	1.10
25079--25107	15	2.0	15	93	6	51	34	0	3	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33724--33757	17	2.0	17	88	0	50	41	0	2	55	1.15
33949--33978	2	15.0	2	100	0	60	50	0	0	50	1.00
33950--34005	18	3.0	18	82	10	60	46	0	0	53	1.00
39067--39231	81	2.1	78	82	8	190	28	6	12	52	1.65
40555--40588	18	1.9	18	88	5	52	29	0	5	64	1.17
40939--40968	2	15.0	2	100	0	60	50	0	0	50	1.00
41468--41536	31	2.3	30	82	9	86	55	4	8	31	1.50
52408--52445	16	2.2	18	86	9	53	28	0	5	65	1.14
52401--52450	18	2.8	17	76	11	55	32	0	4	64	1.12
54542--54644	49	2.1	49	100	0	206	34	15	28	21	1.94
59135--59222	3	29.3	3	95	0	59	34	18	0	47	1.49
60185--60217	2	16.5	2	100	0	66	51	48	0	0	1.00
67385--67422	14	2.9	13	81	11	51	21	5	5	68	1.29
70594--70644	18	2.8	18	78	0	57	43	1	37	17	1.61
70881--71020	74	1.9	74	89	0	217	40	10	7	41	1.68
76590--76620	2	15.5	2	100	0	62	48	0	0	51	1.00
77283--77335	23	2.3	24	84	15	69	28	0	1	69	0.99
77283--77336	22	2.5	21	80	14	65	29	0	1	68	1.00
96523--96600	12	6.9	11	70	15	52	69	17	3	8	1.30
96509--96633	44	2.8	44	80	3	117	68	18	4	9	1.34
96523--96634	33	3.3	33	81	6	100	67	18	5	8	1.35
96609--96698	21	4.3	20	72	17	76	66	18	5	8	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96609--96698	20	4.3	21	72	6	67	66	18	5	8	1.39
101107--101176	31	2.3	32	85	14	103	42	18	17	21	1.89
101294--101371	22	3.4	23	70	16	72	57	19	3	19	1.55
101290--101403	47	2.5	46	82	5	140	54	21	4	20	1.61
101706--101776	31	2.3	32	80	9	85	23	15	15	45	1.85
102952--102982	15	2.1	15	93	0	53	38	0	3	58	1.15
104915--104953	20	2.0	20	84	0	51	33	2	5	58	1.33
106843--106901	25	2.4	25	86	10	79	44	22	23	10	1.83

Tables:   1

The End!