genome.fa.s11992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011992.1 Kokia drynarioides strain JFW-HI SEQ_126990, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129845

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1192--1246	27	2.0	27	96	0	101	23	32	9	34	1.86
1861--1904	24	1.9	24	86	9	65	59	0	11	29	1.32
4159--4189	15	2.1	15	100	0	62	19	6	32	41	1.77
4456--4505	23	2.2	23	88	0	73	36	2	4	58	1.29
4464--4510	23	2.0	23	95	0	85	34	4	6	55	1.45
4933--5251	52	6.2	52	80	7	348	32	16	25	24	1.96
4932--5211	104	2.7	105	88	3	406	33	17	24	25	1.96
5188--5240	24	2.2	24	82	0	61	30	15	26	28	1.96
5200--5251	24	2.2	24	85	0	68	32	15	26	25	1.95
5641--5681	12	3.2	12	89	6	55	43	0	19	36	1.51
7811--7838	14	2.0	14	100	0	56	14	35	14	35	1.86
10155--10397	91	2.7	90	84	6	278	37	14	8	39	1.77
10488--10561	25	3.0	24	72	14	60	31	2	0	66	1.06
21683--21729	25	1.9	24	83	12	60	19	12	10	57	1.64
30667--30710	19	2.3	19	84	0	52	27	15	25	31	1.96
48106--48236	52	2.5	52	88	1	183	22	26	15	35	1.94
48157--48236	24	3.2	24	71	13	79	21	30	16	32	1.95
48142--48224	24	3.1	27	70	13	82	24	27	15	32	1.95
50537--50609	34	2.1	34	84	0	92	27	19	21	31	1.97
50561--50900	183	1.9	184	82	3	434	25	18	23	32	1.97
53639--53909	95	2.8	95	81	5	253	29	18	18	33	1.95
60582--60800	110	2.0	110	96	0	402	38	24	7	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68634--69265	315	2.0	315	98	0	1210	30	24	9	35	1.88
70667--70722	21	2.7	21	85	0	76	28	28	14	28	1.95
70690--70731	21	2.0	21	81	9	50	33	28	9	28	1.88
74408--74446	18	2.2	18	86	4	53	23	20	25	30	1.98
74425--74530	19	5.6	19	78	4	99	34	15	23	26	1.94
80190--80249	21	2.9	21	92	0	102	31	26	15	26	1.95
80190--80261	21	3.5	20	85	11	76	29	29	12	29	1.93
82080--82129	20	2.5	20	81	15	50	42	14	0	44	1.44
95364--95409	20	2.3	20	84	0	56	30	8	6	54	1.56
97894--97924	15	2.1	15	93	0	53	38	9	16	35	1.81
112859--112943	20	4.2	20	75	15	77	32	5	14	47	1.68
127192--127221	6	5.0	6	100	0	60	33	0	33	33	1.58

Tables:   1

The End!