Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012004.1 Kokia drynarioides strain JFW-HI SEQ_127002, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10194
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25


Found at i:8919 original size:23 final size:23

Alignment explanation


    Indices: 8889--8940  Score: 104
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       8879 TGCACAAACA

                                   
       8889 ATATGGCTGAATACGAAGCATGT
          1 ATATGGCTGAATACGAAGCATGT

                                   
       8912 ATATGGCTGAATACGAAGCATGT
          1 ATATGGCTGAATACGAAGCATGT

                  
       8935 ATATGG
          1 ATATGG

       8941 AGATTTATGG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   29  1.00

ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27


Consensus pattern (23 bp):   
ATATGGCTGAATACGAAGCATGT
Done.