Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012005.1 Kokia drynarioides strain JFW-HI SEQ_127003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20171
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:476 original size:216 final size:216
Alignment explanation
Indices: 1--10306 Score: 10285
Period size: 216 Copynumber: 47.8 Consensus size: 216
* *
1 GTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAT
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
65 AAGTTTTTAATTCAACGATCAAAACATGTTTACAAAATG-AAAACTATTTAGAGCAAACGATGTG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * * * *
129 ATTTCCCTCGCATGG-AATGTTTGGAAAATTACTCGAAGGAATGGATCGTGTTGAACACTTTAAG
130 ATTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
193 CAACCGAATTTAAAAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * *
216 GTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAACAACCAAGAGAGAAATAATTCACACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * ** *
281 AGTTTTTAATTTAGAGGCCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * * *
346 CTTCCCAAGCAGGTAATGTTCAAAAAATTGCTCAAAGGATTGGATCGTCTTGAATACTTCAAGGA
131 TTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*
411 ACCAAAGTTATAAAAGAACTC
196 ACCGAAGTTATAAAAGAACTC
* * * *
432 GTAAAAGTTTGACACGTTCGAAAGTACGTCCAAGGACCAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
497 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAAAGATACGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * ** * * * * *
562 TTTCCCTCGCATGG-AATGTTCGGAATGTTACTCGGAGGAAAGGATTGCCTTGAACACTTTAAGG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * * *
626 AACTGGATTTAAAAAATAACTT
195 AACCGAAGTTATAAAAGAACTC
* * * *
648 GTAAAAGTTTGTCAAGTACGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * *
713 AGTTTTTAATTCAAAGGCCAAAAGTTGTCTACAAAATGACAAACCT-TTTAGACCAAATGATGCG
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCG
* * * * * * * *
777 ACTTCCCGAGCATGTAATGTTTGGAAAATTGCTCTAAGG--T---TCGACTTGAATACTTTAAGG
130 ATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* *
837 AATCGAAGCTATAAAAGAACTC
195 AACCGAAGTTATAAAAGAACTC
* * * * * *
859 GTAAAAGTTCGACAAGTTTGAAAGCTCATCCAAGAACCAAGAGAGACACAATTCTCACGAAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
924 AGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * * * *
989 TTTCCCTCGAATGG-AATGTTCGAAATATTTCTAGAAGCAATGGATCGACTTGAACACTTTAAGG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
1053 AACTGGATTTAAAAAAGAACTA
195 AACCGAAGTTATAAAAGAACTC
* ** *
1075 GTAAAAGTTTGACAAGTTCGGAAGTTCAACCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* ** * * * *
1140 AGTTTTTAATTCAAGGGCCAAAACTTATTTACAAAGTGACAGAACT-TTTAGACCAAATGATGCA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCG
* * * * * * * * * *
1204 ACTTCCCGAGCATGTAATGTTCGGAAGATTGCTTGAAGGATTGGATCGTTTTGCATACTTTAAGG
130 ATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
1269 AACCGAAGCTATAAAGGAACTT
195 AACCGAAGTTATAAAAGAACTC
** * * * * *
1291 GTAAAAGTTCAAAAAGTTCGGAGGTTCGTCCAAGAACCAAGACAGAAACAATTCTCACGTATATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
1356 AGTTTTTAATTCAAAGGTCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
1421 TTTCCGTCGCATGG-AATGTTTCG-AAAATTA--C-----------TCGTCTTGAACACTTTAAG
131 TTTCCCTAGCA-GGTAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
1471 GAACCCAATTTAAAAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * * * * *
1494 GTAAAAGTTTGATAATTTTGTAAGCTCGTCCAACAACCAAGAGAGAAATAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* ** * * *
1559 AGTTTTTAATTCAATGGCCAAACCATGTTTACAAAATGTCAAAA-T-TTTAGACCAAATGATGCG
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATG-AAAAACTATTTAGACCAAATGATGCG
* * * ** * * * ** * * * *
1622 ACTTGCCGATTATGTAATGTTCAAAAAATTGCTAAAAGGATTGGATCATCTTGAATTCGTTAAGG
130 ATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
*
1687 AACCGAAGCTATAAAAGAACTC
195 AACCGAAGTTATAAAAGAACTC
* * * ** * *
1709 GTAAAAGTTCGACAAGCTCAAAAGTTCGTCCAAGAACCAAGAGAGGCACAAGTCTCATGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
1774 AGTTTTTGATTCAAAGATCGAAACTTGTTTACAAAATAAAAAAATATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* ** * * * * * *
1839 TTTTCCTCCCATGAAATGTTAGAAAAATTACTCGAAGGAGTGGATCATCTTGAACACTTTAAGGA
131 TTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * *
1904 GCTGGA-TTAAAAAAAGAACTA
196 ACCGAAGTT-ATAAAAGAACTC
* * * *
1925 GTAAAATTTTGACAAGATCAAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* ** * * *
1990 AGTTTTTAAATCAAAGGCCAAAATTTATTTACAAAGTGACAAAACT-TTTAGACC-AATAGATGC
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAAT-GATGC
* * * * * * * * * * * *
2053 AACTTCTCGAGCATGTAATGTTCGGAAGATTGCTCGAAGGATTGGATCATCTTGTATACTGTAAG
129 GATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*
2118 GAACCGAAGCTATAAAAGAACAT-
194 GAACCGAAGTTATAAAAGAAC-TC
* * *
2141 GTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC-TTAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
2205 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGACGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
2270 TTTCCCTCGCATGG-AATGTTCAAAAAATTACTCGAAGGAACT-GATCGTCTTGAACACTTTAAG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAA-TGGATCGTCTTGAATACTTTAAG
* * *
2333 GAACCGGATTTAAAAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * * * *
2356 TTAAAAGTTTGACAATTTCGTAAGTTCGTCCAACAACCAAGAGAGAATCAATTCTCATGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * * * *
2421 AGTTTTTAATTCAAAGGCCAAAAGTTGTTAACAAAGTGACAAACT-TTTAGGACCAAATGATGCT
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTA-GACCAAATGATGCG
* * * * * * * * * *
2485 ACTTCTCGAGAATGTAATGTTTTG-AAAATTGCTCGAAGGATTGGATCCTCTTGAATACCTTAAG
130 ATTTCCCTAGCAGGTAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*
2549 GAACCGAAGCTATAAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * *
2572 GTAAAAG-TTCAGCAAGTTTGAAAGTTCATCCAAGAACCAAGAGAGACACAATTCTCACGTAAAT
1 GTAAAAGTTTGA-CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
2636 AAGTTTTTAATTCAAAG-GCTAAAACCTGTTTACAAAATGACAAACCT-TTTAGACCAAATGATG
65 AAGTTTTTAATTCAAAGATC-AAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATG
* * * * * * * * *
2699 CAACTT-CCTGAGCACGTAATGTTTGAAAAATTGCTCGAAGG-ATTGATCATCTTGCATATTTTA
128 CGATTTCCCT-AGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTA
* *
2762 AGGAACCGAAGGTATAAAAGAAGTC
192 AGGAACCGAAGTTATAAAAGAACTC
* * ** **
2787 GTAAAAGTTCGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAGCCAATTCTCAC-TTCATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
2851 AGTTTTTAATTCAAAGATCAAAA-TATGTTTACAAAAATAAAAAACTATGTAGACCAAATGATGA
66 AGTTTTTAATTCAAAGATCAAAACT-TGTTTAC-AAAATGAAAAACTATTTAGACCAAATGATGC
* * * * * *
2915 GATTTCCCTCGCATGG-AATGTGCGGAAAATTACTCGAATGAATGGATCATCTTGAACACTTTAA
129 GATTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * *
2979 GGAACCGGATTTAGAAAAGAATTC
193 GGAACCGAAGTTATAAAAGAACTC
* * * * * * * *
3003 TTTACAGTTTGACAATTTCGTAAGTTCATCCAACAACCAAGAGAGAATCAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * *
3068 AGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGATAAACT-TTTAGGCCAAATGATACGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * *
3132 CTT-CCTGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGG
131 TTTCCCT-AGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* **
3196 AACCAAAGCAATAAAAGAACTC
195 AACCGAAGTTATAAAAGAACTC
* * * * *
3218 GTAAAAGTTCGACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGACACAATTCTCACGT-ATTA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
3282 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGAGCAAATGATGTGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
3347 TTTCCCTCGCATGG-AATGTTCGAAAAATTACTTGAAGGAAT-GATCGTCTTGAACACTTTAAGG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
** * * *
3410 AATTGGATTTA-AGAAAGAACTA
195 AACCGAAGTTATA-AAAGAACTC
* * * * * *
3432 GTAAAAGGTTGATAGGTTAGAAAGTTCGTCC-AGAAACCGAGAGAGAAATAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
3496 AAGTTTTTAACTCAAAGACCAAAACTTGTTTACAAAATGACAAACCT-TTTAGACTAAATGATGC
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* * * * * * * *
3560 G-TCTTCCCGAGCATGTAATGTTAGAAAAAATGCTAG-ATGAATTGGATCGTCTTGCATACTTTA
129 GAT-TTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAA-TGGATCGTCTTGAATACTTTA
**
3623 AGGAACCGAAGCAATAAAAGAACTC
192 AGGAACCGAAGTTATAAAAGAACTC
** * * *
3648 GTAAAAGTTCAACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGACACAATTCTCACGT-AATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
3712 AGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * *
3777 TTTCCCTCGCATGG-AAAGTTCGAAAAATTACTTGAAGGAATAGATCGTGTTGAACACTTTAAGG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
3841 -ACCTGGATTTAGAAAAGAAATT
195 AACC-GAAGTTATAAAAGAACTC
*
3863 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT-
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * *
3927 AGATTTTTAATTCAAAGGCCAAAACTTGTTTTCAAAATGACAAACCT-TTTAGACCAAATGATGC
66 AG-TTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* * * * * * *
3991 GACTTCCCGAGCATGTAATGATCCG-AAAATTGCTCGAAGGATTGGATCGTCTTGCATACTTTAA
129 GATTTCCCTAGCAGGTAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAA
* *
4055 GGAACCGAAGCTATAAATGAACTC
193 GGAACCGAAGTTATAAAAGAACTC
* * * * *
4079 ATAAAAGTTTGACAAGTTC-AGATGTTCATCCAAGAACCAAGAGAGAAACTATTCTCACGTATAT
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * **
4143 AAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAAGTATTTAGACCAAATGATGTA
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * ** *
4208 ATTTCCGTCA-CATGG-AATGTTC-AGAAAATTACTCGGAGGAATGGATCAACTTGAACACTTTA
130 ATTTCCCT-AGCA-GGTAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTA
* * * *
4270 AGGAACTGGATTTA-AAAAGAACTT
192 AGGAACCGAAGTTATAAAAGAACTC
* * * * *
4294 ATAAAAGTTCGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCAC-TTAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
4358 AGTTTTTAGTTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * *
4423 TTTCCTTCGCATGG-AATGTTC-AGAAAATTACCCGAAGGAATGGATCATCTTGAACACTTTAAG
131 TTTCCCTAGCA-GGTAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
4486 GAACTGGATTTA-AAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * * * *
4508 ATAAAAGTTTGACAATTTCGAAAGTTCGTCCAACAACCAAGTGAGAATCGATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * * *
4573 AGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGACAAACT-GTTAGGACC-AATGATGTG
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTA-GACCAAATGATGCG
* * * * * * * *
4636 ACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTAGATCGTCTTGAATGCTTTAAGG
130 ATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
*
4701 AACCGAAGCTATAAAAGAACTC
195 AACCGAAGTTATAAAAGAACTC
* * * *
4723 GTAAAAGTTCGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
4788 AGTTTTTAATTCAAAGATCAAAACTTGCTTACAAAATGAAAAACTATTTAGACCAAATGATACGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * *
4853 TTTCCTTCA-CATGG-AATGTTTGGAAAATTACT-GTAAGGAATGGAT-GTCTTGAACACTTTAA
131 TTTCCCT-AGCA-GGTAATGTTCGAAAAATTACTCG-AAGGAATGGATCGTCTTGAATACTTTAA
** * * *
4914 GGAATTGAATTTA-AGAAAGAAATT
193 GGAACCGAAGTTATA-AAAGAACTC
* * * *
4938 GTAAAAGTTTGATAACTTCGAAAGTTCGTCCAACAACTAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * *
5003 AGTTTTTAATTTAAAG-GCAAAACCTGTTTACGAAATGACAAACTTTTTAGACAAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* *** ** * * * * * *
5067 CTTCTAAAGCACATAATGTTTGGAAAATTGCTCGAAGGATTGGACCGTCTTGTATACTTTAAGGA
131 TTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* *
5132 ACCGAAGCTATAAAAGAACTT
196 ACCGAAGTTATAAAAGAACTC
* * * ** *
5153 GTAAAAGTTCGACAAATTCGAAAGTTCGTCCAAGAACAAAGAGAGACTCAATTCTCGCGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** **
5218 AGTTTTTAATTCAAAGAAGAAAACTTCCTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * *
5283 TTTCCCTCGCATGG-AATGTTC-AGAAAATTACTCAAAGGAATGGATCCTCTTGAACACTTTAAG
131 TTTCCCTAGCA-GGTAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * *
5346 GAATCGAATTTAAAAAATAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * * * ***
5369 TTAACAGTTTGACAATTTCGGAAGTTCGTCCAACAACCAA-ATGAGAATTGATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAAT
** * * * *
5433 AAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGACAAACTGTTAAGACCAAATGATGCG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * * * * * *
5498 ACTT-CCTGAGCATGTAATGTTCGAAAAATTGCTCGATGGATTGGATCATCATGAATACTTTAAG
130 ATTTCCCT-AGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
5562 GAACCGAAGCTATGAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
** * * * *
5585 GTAAAAGTGCGACAAGTTCGGAAGTTCATCCATGAACCAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
5650 AGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * *
5715 TTTCCCTCGCATGG-AATGTTTCG-AAAATTACTCGAAGGAATGCATCATCTTGAACAATTTAAG
131 TTTCCCTAGCA-GGTAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
5778 GAACCGAATTTAAAAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * * * * * * *
5801 TTAAAATTTTGTCAATTTTGTAAGTTCATCCAACAACCAAGAGAGAAACAATTCTCATGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * *
5866 AGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACCT-TTTAGACCAAATAATACG
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCG
* * * * * * *
5930 ACTTCCCGAGCATGTAATGTTTGAAAAATTGCTCGAAGGATTGGATCGTCTTGCATACTTTAAGG
130 ATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
*
5995 AACCGAAGCTATAAAAGAACTC
195 AACCGAAGTTATAAAAGAACTC
* * * * * *
6017 GAAAAAGTTCGACAAATTC-AGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAAA
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
6081 AAGTTTCTAATTCAAAGATGAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATAATGCG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * *
6146 ATTTCCCTCA-CATGG-AATGCTCGAAAAATTACTCGAAGGAATGGATCGTCTTCAACACTTTAA
130 ATTTCCCT-AGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAA
* *
6209 GGAACCCG-ATTTAAAAAAGAACTC
193 GGAA-CCGAAGTTATAAAAGAACTC
* * * *
6233 GTAAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAACAAAGAGAGAAACAATTCTCACAT-AATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
6297 AGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATGTAGACCAAATGATGCAA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * * * *
6362 TTTCCCTTGC-GTGGAATGTTTGAAAAATTACTCAAAGGAATGGATCATCTTGAACAATTGAAGG
131 TTTCCCTAGCAG-GTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
6426 AACCGGATTTAAAAAAGAACTC
195 AACCGAAGTTATAAAAGAACTC
* * *
6448 GTAAAAGTTTGACAAGTT-TAGAAGTTCGTCCAATAACCAAGAGAGAAACAATTCTCACGGAAAT
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
** * * * *
6512 AAGTTTTTAATTCAAAGGCCAAAATTTGTTTACAAAATGACAAACCT-TTTATACCAAATGGTGC
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* * * * * * * * * * * *
6576 GACTTACCGAGCATGTAACGTTC-AGAAAATTGCTTGAAGTATTGTATCGTCCTGATTACTTTAA
129 GATTTCCCTAGCAGGTAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * *
6640 GGAACCAAAGCTATAAAGGAACT-
193 GGAACCGAAGTTATAAAAGAACTC
* * * *
6663 GATAAAAGTTCGACAAATTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
1 G-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
6728 AAGTTTATAATTCAAAGATCAAAACATGTTTTCAAAATGAAAAACTATTTAGACTAAATGATGCG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * * * * *
6793 ATTTCCCTCGAATGG-AATGGTCGAAAAATTACTCGCAGGAATGGATCGTCTTAAACACTTTAAG
130 ATTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*
6857 GAACCGAATTTA-AAGAAGAACTC
194 GAACCGAAGTTATAA-AAGAACTC
** * * * * *
6880 GTAAAAGTTTGACTTGTTCGGAAGTTCGTCCAACAACGACGAGAGAAACAATTTTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
6945 AGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTATACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * * *
7010 TTTCCCTGGCATGG-AATGATCGGAAAATTACTCGAAGGAATAGACCGTCTTCAACACTTTAAGG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
7074 AAACGGA-TTCAAAAAAGAACTC
195 AACCGAAGTT-ATAAAAGAACTC
* * * * * *
7096 GTAAAAGTTTGACAATTTCGTATGTTCGTCCAACAACCAAGAGAGAAATAATTCTCATGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * **
7161 AGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACCT-TTTAGACCAAATGATAAG
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCG
* * * * * * * *
7225 ACTTCCCGAGCATGTAATGTTCGGACAAATTGCTCGAAGGATTGGATCATCATGAATACTTTAAG
130 ATTTCCCTAGCAGGTAATGTTC-GAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * *
7290 GAACCGAAGCTATGAAATAACTC
194 GAACCGAAGTTATAAAAGAACTC
* ** ** *
7313 ATAAAAGTGCGACAAGTTCGAAAGTTCGAAAGTTCATCCCTGAACCAAGAGAGACACAATTCTCA
1 GTAAAAGTTTGACAAGTTCGAAAGTTC----G----TCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
7378 CGTAAATAA-TTTATAATTCAAAGATCAAAACATGTTTAC-AAA--AAAAACTATTTATACCAAA
58 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * * * *
7439 TGATGCAATTTACCTTGCATGG-AATGTTCCG-AAAATTACTCGAAGGAATGGATCGTCTAGAAA
123 TGATGCGATTTCCCTAGCA-GGTAATGTT-CGAAAAATTACTCGAAGGAATGGATCGTCTTGAAT
* * * *
7502 ACTTTAAGGAATCGGATTTAAAAAAGAACTC
186 ACTTTAAGGAACCGAAGTTATAAAAGAACTC
* * *
7533 GTAAAAGTTTGACAACTTTC-TAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
1 GTAAAAGTTTGACAA-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* ** *
7597 AAGTTTTTAATTCAATGGCCAAAACTTGTTTATAAAATGACAAAA-T-TTTCAGACCAAATGATG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTT-AGACCAAATGATG
* * ** * * * * * * *
7660 CAACTTCCGGAGCATGTAATGTTCAAAAAATTACTTGAATGATTGGATCGTTTTGAATACTGTAA
128 CGATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAA
*
7725 GGAACCGAAGCTATAAAAGAACTC
193 GGAACCGAAGTTATAAAAGAACTC
* * * **
7749 GTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACC-AGAGAGACACAATTCTCTTGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * ***
7813 AGATTTTAATTCAAAGATCAAAACTTGTTTACAATATGAAAAACTATTTAGACCAAATGATATTA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * *
7878 TTTCCCTCGCATGG-AATTTTCAAAAAATTACTCGAAAGAAAGGATCGTCTTGAACACTTTAAGG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
7942 AA-CTAGATTTAAAAAAGAACTC
195 AACCGA-AGTTATAAAAGAACTC
* * * * * *
7964 GTAAAAGTTTGACAATTTCGTAAGTTCGTCCAACAACAAAGCGAGAAACAATTCTCACATAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * * * * *
8029 AGTTTTTAATTCAAAGGCCAAAACTTATTTACAAAGTGACAAACTTTTTAGACCGAACGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * * * * * * *
8094 CTTCTCGAGCATGTAATGTT-TAGAAAATTGCTCGAAGTATTGTATCGTCCTGACA-ATTTTAAG
131 TTTCCCTAGCAGGTAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGA-ATACTTTAAG
*
8157 GAACCGAAGCTATAAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * *
8180 ATAAAAGTTCGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
8245 AGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
8310 TTTCCCT--C--GCAATGTTTC-AAAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAAGG
131 TTTCCCTAGCAGGTAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
8370 GACC-AGATTTAAAAAAGAACTC
195 AACCGA-AGTTATAAAAGAACTC
* * * **
8392 GTAAAAGTTTGACAATTTC-ATAAGTTTGTCCAACAAGAAAGAGAGAAACAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* ** * * **
8456 AAGTTTTGAATTCAAAGGCCAAAACTTCTTTACAAAATGACAAACCT-TTTAGACCAAATGATAT
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* * * * * * * * * *
8520 GACTTCTCGAGCATGTAAAGTTTGGAAAATTGCTCGAAGGATTGGATCGTCCT-ACATACTTTAA
129 GATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGA-ATACTTTAA
* * * *
8584 GGAACCAAAGCTATAATAGGACTC
193 GGAACCGAAGTTATAAAAGAACTC
* * **
8608 GTAAAAGTTTGACTAGTTCGAAAGTTCGTCCATGAACCAAGAGAGGCACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG----T-
* * *
8673 AGTTTTAATAAGTTTTTAATTCAAAGATCAAAGCATGTTTACGAAATGAAAAACTATTTAGACCA
61 A-----AATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
* * * *
8738 AATGATGCGATTTCTCTCGCATGG-AATGTTCAAAAAATTACTCAAAGGAATGGATCGTCTTGAA
121 AATGATGCGATTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAA
**** * * *
8802 TAGAACAAGGAACCTG-ATTTA-AAGAAGAAGTT
185 TACTTTAAGGAACC-GAAGTTATAA-AAGAACTC
* * * * *
8834 GTAAAGGGTTGACAATTTTC-AAGGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT
1 GTAAAAGTTTGACAA-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* ** * *
8898 AAGTTTTGAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACCATTTAGACCAAATGATGCG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * * * *
8963 ACTT-CTTGAGCATGTAATGTTCGAAAAATTACTCGAAGG-ATGGATCGTCTTGCATACTTGAAG
130 ATTTCCCT-AGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*
9026 GAACCGAAGTTATAAAAGAACTA
194 GAACCGAAGTTATAAAAGAACTC
* * * * * * *
9049 TTAAAAGTTTGACAAGTTTGGAAGTCCGCCCAAGAACCAAGAGATAAACAATTCTCACGTAAATT
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
9114 AGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * *
9179 TTTCCCTCGCATGAAATGTTCGGAAAATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGGA
131 TTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * * * *
9244 ATTGGATTTAAAAAAGAACTA
196 ACCGAAGTTATAAAAGAACTC
* * * *
9265 GTAAAAGTTTGACAAGTTCCG-AAGTTCATCCAACAACCATGAGAGAAATAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTT-CGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* ** * *
9329 AAGTTTTTAATTCGAAGGCCAAAACTTCTTTACAAAATGACAAACCT-TTTAGACCAAATGATGC
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* * * * * * * * *
9393 GACTTCTCGAGCATGTAAAGTAT-GGAAAATTGCTCGAAGGATTGGATCGTCCT-ACATACTTTA
129 GATTTCCCTAGCAGGTAATGT-TCGAAAAATTACTCGAAGGAATGGATCGTCTTGA-ATACTTTA
* * *
9456 AGGAACCGAAGCTATAATAGGACTC
192 AGGAACCGAAGTTATAAAAGAACTC
** * * * * *
9481 GTAAAAGTTCCACTAGTTCGGAAGTTCGTCCATGAACTAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
9546 AGTTTTTAATTCAAAGATTAAAACTTTTTTACAAAATTAAAAAATATTT-GCACCAAATGATGAG
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG-ACCAAATGATGCG
* * * * * * * * * *
9610 ATTTCCCTTGCATGAAATGATCAAAAAATTACTCAAAGGAATGGATCGTCCTGAACACTATATGG
130 ATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
9675 AACAGGATTTAAAAAAGAACTA
195 AACCGAAGTTATAAAAGAACTC
* * * *
9697 GTAAAAGTTTGACAAGTTTGGAAGTTCGTTCAACAACCAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
9762 AGTTTTTAATTCAAAGATCAAATCATGTTTACAAACTGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
** * * * *
9827 TTTCCCTCCCATGG-AATGCTCGAAAAAGTGCTCGAAGGAATAGATCGTCTTG-ATCACTTTAAG
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAAT-ACTTTAAG
* *
9890 GAATC--AGATTCAAAAAAGAACTC
194 GAACCGAAG-TT-ATAAAAGAACTC
* * * *
9913 GTAAAAGTTTGACAATTTC-ATATGTTCGTCCAACAACTAAGAGAGAAACAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
** * *
9977 AAGTTTTTAATTCAAAGGCCAACACTTGTTTACAAAATGACAAACCT-TTTAGACCAAATGATGC
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* * * * * * * *
10041 GACTTCCCGAGCATGTAATGTTCGAAAAATTGCTTGAATGATTGGATCGTCTTGCATACTTTAAG
129 GATTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*
10106 GAACCGAAGCTATAAAAGAACTC
194 GAACCGAAGTTATAAAAGAACTC
* * * * * *
10129 GTAAAAATTCGACAAGTTCGGAAGTTCATCCAGGAACCAAGAGAGAAATAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
10194 AGTTTTTAATTCAAAGATCACAACTTGCTTACAAAATGAAAAACTATTTAGACCAAATGATACGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
10259 TTTCCTTCGCATGG-AATGCTCGAAAAATTACTCGAAGGAATGGATCGT
131 TTTCCCTAGCA-GGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGT
10307 AAAAGTTTGA
Statistics
Matches: 8228, Mismatches: 1614, Indels: 497
0.80 0.16 0.05
Matches are distributed among these distances:
201 4 0.00
202 33 0.00
203 122 0.01
204 4 0.00
210 5 0.00
211 166 0.02
212 199 0.02
213 39 0.00
214 544 0.07
215 1964 0.24
216 4586 0.56
217 219 0.03
218 4 0.00
220 73 0.01
221 36 0.00
222 3 0.00
223 3 0.00
224 26 0.00
225 39 0.00
226 154 0.02
227 5 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (216 bp):
GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
TTTCCCTAGCAGGTAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
ACCGAAGTTATAAAAGAACTC
Found at i:2207 original size:431 final size:432
Alignment explanation
Indices: 1--10306 Score: 11650
Period size: 432 Copynumber: 23.9 Consensus size: 432
* * *
1 GTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAT
1 GTAAAAGTTCGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
65 AAGTTTTTAATTCAACGATCAAAACATGTTTACAAAATG-AAAACTATTTAGAGCAAACGATGTG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * * *
129 ATTTCCCTCGCATGGAATGTTTGGAAAATTACTCGAAGGAATGGATCGTGTTGAACACTTTAAGC
130 ATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* **
194 AACCGAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAACAACCAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
* * * *
259 AGAAATAATTCACACGTAAATAAGTTTTTAATTTAGAGGCCAAAACTTGTTTACAAAATGA-AAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* * ** *
323 ACTTTTTAGACCAAATGATGCGACTTCCCAAGCAGGTAATGTTCAAAAAATTGCTCAAAGGATTG
325 AC-TTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTG
* * *
388 GATCGTCTTGAATACTTCAAGGAACCAAAGTTATAAAAGAACTC
389 GATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * *
432 GTAAAAGTTTGACACGTTCGAAAGTACGTCCAAGGACCAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
497 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAAAGATACGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* ** * * * *
562 TTTCCCTCGCATGGAATGTTCGGAATGTTACTCGGAGGAAAGGATTGCCTTGAACACTTTAAGGA
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
* * * * *
627 ACTGGATTTAAAAAATAACTTGTAAAAGTTTGTCAAGTACGGAAGTTCGTCCAACAACCAAGAGA
196 ACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGA
* * *
692 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTCTACAAAATGACAAAC
261 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAA
* *
757 CTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTTGGAAAATTGCTCTAAGG--T---
326 CTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGA
* *
817 TCGACTTGAATACTTTAAGGAATCGAAGCTATAAAAGAACTC
391 TCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * *
859 GTAAAAGTTCGACAAGTTTGAAAGCTCATCCAAGAACCAAGAGAGACACAATTCTCACGAAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
924 AGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * *
989 TTTCCCTCGAATGGAATGTTCGAAATATTTCTAGAAGCAATGGATCGACTTGAACACTTTAAGGA
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
* * **
1054 ACTGGATTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCAACCAACAACCAAGAGA
196 ACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGA
* * * *
1119 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAGGGCCAAAACTTATTTACAAAGTGACAGAA
261 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAA
* * *
1184 CTTTTAGACCAAATGATGCAACTTCCCGAGCATGTAATGTTCGGAAGATTGCTTGAAGGATTGGA
326 CTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGA
* * * *
1249 TCGTTTTGCATACTTTAAGGAACCGAAGCTATAAAGGAACTT
391 TCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * * *
1291 GTAAAAGTTCAAAAAGTTCGGAGGTTCGTCCAAGAACCAAGACAGAAACAATTCTCACGTATATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
1356 AGTTTTTAATTCAAAGGTCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
*
1421 TTTCCGTCGCATGGAATGTTTCG-AAAATTA--C-----------TCGTCTTGAACACTTTAAGG
131 TTTCCCTCGCATGGAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
** * * * * *
1472 AACCCAATTTAAAAAAGAACTCGTAAAAGTTTGATAATTTTGTAAGCTCGTCCAACAACCAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
* * * * *
1537 AGAAATAATTCTCACGTAAATAAGTTTTTAATTCAATGGCCAAACCATGTTTACAAAATGTCAAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* ** ** **
1602 A-TTTTAGACCAAATGATGCGACTTGCCGATTATGTAATGTTCAAAAAATTGCTAAAAGGATTGG
325 ACTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGG
* * *
1666 ATCATCTTGAATTCGTTAAGGAACCGAAGCTATAAAAGAACTC
390 ATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * ** * *
1709 GTAAAAGTTCGACAAGCTCAAAAGTTCGTCCAAGAACCAAGAGAGGCACAAGTCTCATGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
1774 AGTTTTTGATTCAAAGATCGAAACTTGTTTACAAAATAAAAAAATATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * *
1839 TTTTCCTCCCATGAAATGTTAGAAAAATTACTCGAAGGAGTGGATCATCTTGAACACTTTAAGGA
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
* * * * * * **
1904 GCTGGATTAAAAAAAGAACTAGTAAAATTTTGACAAGATCAAAAGTTCGTCCAACAACCAAGAGA
196 ACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGA
* * * *
1969 GAAACAATTCTCACGTAAATAAGTTTTTAAATCAAAGGCCAAAATTTATTTACAAAGTGACAAAA
261 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAA
* * *
2034 CTTTTAGACC-AATAGATGCAACTTCTCGAGCATGTAATGTTCGGAAGATTGCTCGAAGGATTGG
326 CTTTTAGACCAAAT-GATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGG
* * *
2098 ATCATCTTGTATACTGTAAGGAACCGAAGCTATAAAAGAACAT-
390 ATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAAC-TC
* * * *
2141 GTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC-TTAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
*
2205 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGACGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
*
2270 TTTCCCTCGCATGGAATGTTCAAAAAATTACTCGAAGGAACT-GATCGTCTTGAACACTTTAAGG
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAA-TGGATCGTCTTGAACACTTTAAGG
* * *
2334 AACCGGATTTAAAAAAGAACTCTTAAAAGTTTGACAATTTCGTAAGTTCGTCCAACAACCAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
* * * * *
2399 AGAATCAATTCTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTAACAAAGTGAC-AA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* * * **
2463 ACTTTTAGGACCAAATGATGCTACTTCTCGAGAATGTAATGTTTTGAAAATTGCTCGAAGGATTG
325 ACTTTTA-GACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTG
* *
2528 GATCCTCTTGAATACCTTAAGGAACCGAAGCTATAAAAGAACTC
389 GATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * *
2572 GTAAAAGTTC-AGCAAGTTTGAAAGTTCATCCAAGAACCAAGAGAGACACAATTCTCACGTAAAT
1 GTAAAAGTTCGA-CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
2636 AAGTTTTTAATTCAAAG-GCTAAAACCTGTTTACAAAATGACAAACCT-TTTAGACCAAATGATG
65 AAGTTTTTAATTCAAAGATC-AAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATG
* * * * * * * * * * * *
2699 CAACTT-CCTGAGCACGTAATGTTTGAAAAATTGCTCGAAGG-ATTGATCATCTTGCATATTTTA
128 CGATTTCCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTA
* ** * * * ** *
2762 AGGAACCGAAGGTATAAAAGAAGTCGTAAAAGTTCGACAAGTTCAAAAGTTCGTCCAAGAACCAA
192 AGGAACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAA
** ** **
2827 GAGAGAGCCAATTCTCAC-TTCATAAGTTTTTAATTCAAAGATCAAAA-TATGTTTACAAAAAT-
257 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACT-TGTTTAC-AAAATG
* * * * ** * * * *
2889 AAAAAACTATGTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTGCGGAAAATTACTCGAAT
320 ACAAAACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAG
* * * * ** * *
2954 GAATGGATCATCTTGAACACTTTAAGGAACCGGATTTAGAAAAGAATTC
384 GATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * * * * * *
3003 TTTACAGTTTGACAATTTCGTAAGTTCATCCAACAACCAAGAGAGAATCAATTCTCACGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * *
3068 AGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGATAAACT-TTTAGGCCAAATGATACGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * * *
3132 CTT-CCTGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGG
131 TTTCCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* *** * * *
3196 AACC-AAAGCAATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCTAAGAACCAAGA
195 AACCGGATTTAA-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGA
* * **
3260 GAGACACAATTCTCACGT-ATTAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AA
259 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAA
* * * ** * * * * *
3323 AACTATTTAGAGCAAATGATGTGATTTCCCTCGCATGGAATGTTCGAAAAATTACTTGAAGGAAT
324 AACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATT
* ** * ** *
3388 -GATCGTCTTGAACACTTTAAGGAATTGGATTTA-AGAAAGAACTA
388 GGATCGTCTTGAATACTTTAAGGAACCGAAGCTATA-AAAGAACTC
* * * * *
3432 GTAAAAGGTT-GATAGGTTAGAAAGTTCGTCC-AGAAACCGAGAGAGAAATAATTCTCACGTAAA
1 GTAAAA-GTTCGACAAGTTCGAAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCACGTAAA
* * * *
3495 TAAGTTTTTAACTCAAAGACCAAAACTTGTTTACAAAATGACAAACCT-TTTAGACTAAATGATG
64 TAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATG
** * * * * * * * *
3559 CG-TCTTCCCGAGCATGTAATGTTAGAAAAAATGCTAG-ATGAATTGGATCGTCTTGCATACTTT
128 CGAT-TTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAA-TGGATCGTCTTGAACACTTT
*** ** * *
3622 AAGGAACC-GAAGCAATAAAAGAACTCGTAAAAGTTCAACAAGTTCGGAAGTTCTTCCAAGAACC
191 AAGGAACCGGATTTAA-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACC
* ***
3686 AAGAGAGACACAATTCTCACGT-AATAAGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATG
255 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATG
* ** * * * * *
3750 A-AAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAAAGTTCGAAAAATTACTTGAAG
320 ACAAAACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAG
* * * * * ** * * *
3814 GAATAGATCGTGTTGAACACTTTAAGG-ACCTGGATTTAGAAAAGAAATT
384 GATTGGATCGTCTTGAATACTTTAAGGAACC-GAAGCTATAAAAGAACTC
* *
3863 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAAT-
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * *
3927 AGATTTTTAATTCAAAGGCCAAAACTTGTTTTCAAAATGACAAACCT-TTTAGACCAAATGATGC
66 AG-TTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* ** * * * * * *
3991 GACTTCCCGAGCATGTAATGATCCG-AAAATTGCTCGAAGGATTGGATCGTCTTGCATACTTTAA
129 GATTTCCCTCGCATGGAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAA
* ** * * * * * * *
4055 GGAACCGAAGCTATAAATGAACTCATAAAAGTTTGACAAGTTCAGATGTTCATCCAAGAACCAAG
193 GGAACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAG
* * ** *
4120 AGAGAAACTATTCTCACGTATATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-A
258 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACA
* * * * * * * *
4184 AAAGTATTTAGACCAAATGATG-TAATTTCCGTCA-CATGGAATGTTCAGAAAATTACTCGGAGG
323 AAACT-TTTAGACCAAATGATGCGACTTCCCG--AGCATGTAATGTTCGGAAAATTGCTCGAAGG
* ** * * * ** *
4247 AATGGATCAACTTGAACACTTTAAGGAACTGGATTTA-AAAAGAACTT
385 ATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * *
4294 ATAAAAGTTCGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCAC-TTAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
4358 AGTTTTTAGTTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
4423 TTTCCTTCGCATGGAATGTTC-AGAAAATTACCCGAAGGAATGGATCATCTTGAACACTTTAAGG
131 TTTCCCTCGCATGGAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* * * * *
4487 AACTGGATTT-AAAAAGAACTCATAAAAGTTTGACAATTTCGAAAGTTCGTCCAACAACCAAGTG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
* * *
4551 AGAATCGATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGAC-AA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* * *
4615 ACTGTTAGGACC-AATGATGTGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTA
325 ACTTTTA-GACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTG
*
4679 GATCGTCTTGAATGCTTTAAGGAACCGAAGCTATAAAAGAACTC
389 GATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * *
4723 GTAAAAGTTCGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
4788 AGTTTTTAATTCAAAGATCAAAACTTGCTTACAAAATGAAAAACTATTTAGACCAAATGATACGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * *
4853 TTTCCTTCACATGGAATGTTTGGAAAATTACT-GTAAGGAATGGAT-GTCTTGAACACTTTAAGG
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCG-AAGGAATGGATCGTCTTGAACACTTTAAGG
** * * * * * * * *
4916 AATTGAATTTAAGAAAGAAATTGTAAAAGTTTGATAACTTCGAAAGTTCGTCCAACAACTAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
* * *
4981 AGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGG-CAAAACCTGTTTACGAAATGAC-AA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* *** ** *
5044 ACTTTTTAGACAAAATGATGCGACTTCTAAAGCACATAATGTTTGGAAAATTGCTCGAAGGATTG
325 AC-TTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTG
* * *
5109 GACCGTCTTGTATACTTTAAGGAACCGAAGCTATAAAAGAACTT
389 GATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * ** *
5153 GTAAAAGTTCGACAAATTCGAAAGTTCGTCCAAGAACAAAGAGAGACTCAATTCTCGCGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** **
5218 AGTTTTTAATTCAAAGAAGAAAACTTCCTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* *
5283 TTTCCCTCGCATGGAATGTTC-AGAAAATTACTCAAAGGAATGGATCCTCTTGAACACTTTAAGG
131 TTTCCCTCGCATGGAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* * * * * *
5347 AATCGAATTTAAAAAATAACTCTTAACAGTTTGACAATTTCGGAAGTTCGTCCAACAACCAA-AT
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGA-
*** *
5411 GAGAATTGATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGAC-A
259 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAA
* * * *
5475 AACTGTTAAGACCAAATGATGCGACTTCCTGAGCATGTAATGTTCGAAAAATTGCTCGATGGATT
324 AACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATT
* * *
5540 GGATCATCATGAATACTTTAAGGAACCGAAGCTATGAAAGAACTC
388 GGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * *
5585 GTAAAAGTGCGACAAGTTCGGAAGTTCATCCATGAACCAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
5650 AGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
5715 TTTCCCTCGCATGGAATGTTTCG-AAAATTACTCGAAGGAATGCATCATCTTGAACAATTTAAGG
131 TTTCCCTCGCATGGAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* * * * * * * *
5779 AACCGAATTTAAAAAAGAACTCTTAAAATTTTGTCAATTTTGTAAGTTCATCCAACAACCAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
*
5844 AGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* * * * *
5909 CCTTTTAGACCAAATAATACGACTTCCCGAGCATGTAATGTTTGAAAAATTGCTCGAAGGATTGG
325 ACTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGG
*
5974 ATCGTCTTGCATACTTTAAGGAACCGAAGCTATAAAAGAACTC
390 ATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * *
6017 GAAAAAGTTCGACAAATTC-AGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAAA
1 GTAAAAGTTCGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
6081 AAGTTTCTAATTCAAAGATGAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATAATGCG
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
* * *
6146 ATTTCCCTCACATGGAATGCTCGAAAAATTACTCGAAGGAATGGATCGTCTTCAACACTTTAAGG
130 ATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* * * *
6211 AACCCGATTTAAAAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAACAAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
* ** *
6276 AGAAACAATTCTCACAT-AATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-AAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* * * ** * * * * * * *
6339 ACTATGTAGACCAAATGATGCAATTTCCCTTGCGTGGAATGTTTGAAAAATTACTCAAAGGAATG
325 ACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTG
* * * * * ** *
6404 GATCATCTTGAACAATTGAAGGAACCGGATTTAAAAAAGAACTC
389 GATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * *
6448 GTAAAAGTTTGACAAGTT-TAGAAGTTCGTCCAATAACCAAGAGAGAAACAATTCTCACGGAAAT
1 GTAAAAGTTCGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
** * * * *
6512 AAGTTTTTAATTCAAAGGCCAAAATTTGTTTACAAAATGACAAACCT-TTTATACCAAATGGTGC
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* * ** * * * * * * * * **
6576 GACTTACCGAGCATGTAACGTTC-AGAAAATTGCTTGAAGTATTGTATCGTCCTGATTACTTTAA
129 GATTTCCCTCGCATGGAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAA
** ** * * * * * * *
6640 GGAACCAAAGCTATAAAGGAACT-GATAAAAGTTCGACAAATTCGAAAGTTCATCCAAGAACCAA
193 GGAACCGGATTTAAAAAAGAACTCG-TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAA
* * ** * *
6704 GAGAGAAACAATTCTCACATAAATAAGTTTATAATTCAAAGATCAAAACATGTTTTCAAAATGA-
257 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGAC
* * ** * * * * * *
6768 AAAACTATTTAGACTAAATGATGCGATTTCCCTCGAATGGAATGGTCGAAAAATTACTCGCAGGA
322 AAAACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGA
* * * **
6833 ATGGATCGTCTTAAACACTTTAAGGAACCGAATTTA-AAGAAGAACTC
386 TTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAA-AAGAACTC
* ** * * * * *
6880 GTAAAAGTTTGACTTGTTCGGAAGTTCGTCCAACAACGACGAGAGAAACAATTTTCACGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
6945 AGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTATACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * * * *
7010 TTTCCCTGGCATGGAATGATCGGAAAATTACTCGAAGGAATAGACCGTCTTCAACACTTTAAGGA
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
* * * * *
7075 AACGGATTCAAAAAAGAACTCGTAAAAGTTTGACAATTTCGTATGTTCGTCCAACAACCAAGAGA
196 ACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGA
* * *
7140 GAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAC
261 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAA
**
7205 CTTTTAGACCAAATGATAAGACTTCCCGAGCATGTAATGTTCGGACAAATTGCTCGAAGGATTGG
326 CTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGA-AAATTGCTCGAAGGATTGG
* * * *
7270 ATCATCATGAATACTTTAAGGAACCGAAGCTATGAAATAACTC
390 ATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * ** *
7313 ATAAAAGTGCGACAAGTTCGAAAGTTCGAAAGTTCATCCCTGAACCAAGAGAGACACAATTCTCA
1 GTAAAAGTTCGACAAGTTCGAAAGTTC----G----TCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
7378 CGTAAATAA-TTTATAATTCAAAGATCAAAACATGTTTAC-AAA--AAAAACTATTTATACCAAA
58 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * * * *
7439 TGATGCAATTTACCTTGCATGGAATGTTCCG-AAAATTACTCGAAGGAATGGATCGTCTAGAAAA
123 TGATGCGATTTCCCTCGCATGGAATGTT-CGAAAAATTACTCGAAGGAATGGATCGTCTTGAACA
* * *
7503 CTTTAAGGAATCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAACTTTC-TAAGTTCGTCCAAC
187 CTTTAAGGAACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAA-GTTCGGAAGTTCGTCCAAC
* *
7567 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGGCCAAAACTTGTTTATAA
251 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAA
* * ** * *
7632 AATGACAAAA-TTTTCAGACCAAATGATGCAACTTCCGGAGCATGTAATGTTCAAAAAATTACTT
316 AATGACAAAACTTTT-AGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTC
* * *
7696 GAATGATTGGATCGTTTTGAATACTGTAAGGAACCGAAGCTATAAAAGAACTC
380 GAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * **
7749 GTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACC-AGAGAGACACAATTCTCTTGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * ***
7813 AGATTTTAATTCAAAGATCAAAACTTGTTTACAATATGAAAAACTATTTAGACCAAATGATATTA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * * *
7878 TTTCCCTCGCATGGAATTTTCAAAAAATTACTCGAAAGAAAGGATCGTCTTGAACACTTTAAGGA
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
** * * * *
7943 ACTAGATTTAAAAAAGAACTCGTAAAAGTTTGACAATTTCGTAAGTTCGTCCAACAACAAAGCGA
196 ACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGA
* * *
8008 GAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGGCCAAAACTTATTTACAAAGTGAC-AAA
261 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAA
* * * ** * *
8072 CTTTTTAGACCGAACGATGCGACTTCTCGAGCATGTAATGTTTAGAAAATTGCTCGAAGTATTGT
326 C-TTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGG
* *
8137 ATCGTCCTGACA-ATTTTAAGGAACCGAAGCTATAAAAGAACTC
390 ATCGTCTTGA-ATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * *
8180 ATAAAAGTTCGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
8245 AGTTTATAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
*
8310 TTTCCCTCGC----AATGTTTC-AAAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAAGG
131 TTTCCCTCGCATGGAATG-TTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* * * ** * **
8370 GACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAATTTCATAAGTTTGTCCAACAAGAAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
* *
8435 AGAAACAATTCTCACGTAAATAAGTTTTGAATTCAAAGGCCAAAACTTCTTTACAAAATGACAAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* ** * * *
8500 CCTTTTAGACCAAATGATATGACTTCTCGAGCATGTAAAGTTTGGAAAATTGCTCGAAGGATTGG
325 ACTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGG
* * * *
8565 ATCGTCCT-ACATACTTTAAGGAACCAAAGCTATAATAGGACTC
390 ATCGTCTTGA-ATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * **
8608 GTAAAAGTTTGACTAGTTCGAAAGTTCGTCCATGAACCAAGAGAGGCACAATTCTCACGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG----T-
* * *
8673 AGTTTTAATAAGTTTTTAATTCAAAGATCAAAGCATGTTTACGAAATGAAAAACTATTTAGACCA
61 A-----AATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
* * * *
8738 AATGATGCGATTTCTCTCGCATGGAATGTTCAAAAAATTACTCAAAGGAATGGATCGTCTTGAAT
121 AATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAAC
**** * * * * * * *
8803 AGAACAAGGAACCTGATTTAAAGAAGAAGTTGTAAAGGGTTGACAATTTTC--AAGGTTCGTCCA
186 ACTTTAAGGAACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAA-GTTCGGAA-GTTCGTCCA
*
8866 ACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGAATTCAAAGGCCAAAACTTGTTTAC
249 ACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTAC
* * ** * *
8931 AAAATGACAAACCATTTAGACCAAATGATGCGACTTCTTGAGCATGTAATGTTCGAAAAATTACT
314 AAAATGACAAAACTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCT
* * * *
8996 CGAAGGA-TGGATCGTCTTGCATACTTGAAGGAACCGAAGTTATAAAAGAACTA
379 CGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * * * * *
9049 TTAAAAGTTTGACAAGTTTGGAAGTCCGCCCAAGAACCAAGAGATAAACAATTCTCACGTAAATT
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
9114 AGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGTGA
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
* * *
9179 TTTCCCTCGCATGAAATGTTCGGAAAATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGGA
131 TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
** * * * *
9244 ATTGGATTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCCGAAGTTCATCCAACAACCATGAGA
196 ACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGA
* * * *
9309 GAAATAATTCTCACGTAAATAAGTTTTTAATTCGAAGGCCAAAACTTCTTTACAAAATGACAAAC
261 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAA
* *
9374 CTTTTAGACCAAATGATGCGACTTCTCGAGCATGTAAAGTAT-GGAAAATTGCTCGAAGGATTGG
326 CTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGT-TCGGAAAATTGCTCGAAGGATTGG
* * *
9438 ATCGTCCT-ACATACTTTAAGGAACCGAAGCTATAATAGGACTC
390 ATCGTCTTGA-ATACTTTAAGGAACCGAAGCTATAAAAGAACTC
* * * * * *
9481 GTAAAAGTTCCACTAGTTCGGAAGTTCGTCCATGAACTAAGAGAGACACAATTCTCACGTAAATA
1 GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
9546 AGTTTTTAATTCAAAGATTAAAACTTTTTTACAAAATTAAAAAATATTT-GCACCAAATGATGAG
66 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG-ACCAAATGATGCG
* * * * * * * *
9610 ATTTCCCTTGCATGAAATGATCAAAAAATTACTCAAAGGAATGGATCGTCCTGAACACTATATGG
130 ATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGG
* * * *
9675 AACAGGATTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCGTTCAACAACCAAGAG
195 AACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAG
** * * *
9740 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAATCATGTTTACAAACTGA-AAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
* *** * * * * * *
9804 ACTATTTAGACCAAATGATGCGATTTCCCTCCCATGGAATGCTCGAAAAAGTGCTCGAAGGAATA
325 ACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTG
* ** *
9869 GATCGTCTTG-ATCACTTTAAGGAATCAGATTC-AAAAAAGAACTC
389 GATCGTCTTGAAT-ACTTTAAGGAA-CCGAAGCTATAAAAGAACTC
* * * * *
9913 GTAAAAGTTTGACAATTTC-ATATGTTCGTCCAACAACTAAGAGAGAAACAATTCTCACGTAAAT
1 GTAAAAGTTCGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
** * *
9977 AAGTTTTTAATTCAAAGGCCAACACTTGTTTACAAAATGACAAACCT-TTTAGACCAAATGATGC
65 AAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGC
* ** * * * * * * *
10041 GACTTCCCGAGCATGTAATGTTCGAAAAATTGCTTGAATGATTGGATCGTCTTGCATACTTTAAG
129 GATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAG
* ** * * * * **
10106 GAACCGAAGCTATAAAAGAACTCGTAAAAATTCGACAAGTTCGGAAGTTCATCCAGGAACCAAGA
194 GAACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGA
* ** * *
10171 GAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCACAACTTGCTTACAAAATGA-AA
259 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAA
* * *** * * * * *
10235 AACTATTTAGACCAAATGATACGATTTCCTTCGCATGGAATGCTCGAAAAATTACTCGAAGGAAT
324 AACT-TTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATT
10300 GGATCGT
388 GGATCGT
10307 AAAAGTTTGA
Statistics
Matches: 8495, Mismatches: 1215, Indels: 329
0.85 0.12 0.03
Matches are distributed among these distances:
417 3 0.00
418 223 0.03
419 131 0.02
420 1 0.00
427 411 0.05
428 399 0.05
429 366 0.04
430 988 0.12
431 2361 0.28
432 2743 0.32
433 110 0.01
434 1 0.00
436 82 0.01
437 233 0.03
438 81 0.01
439 3 0.00
440 30 0.00
441 122 0.01
442 203 0.02
443 4 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (432 bp):
GTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA
TTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGA
ACCGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGA
GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAA
CTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGA
TCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
Found at i:10422 original size:176 final size:176
Alignment explanation
Indices: 10163--10482 Score: 460
Period size: 176 Copynumber: 1.8 Consensus size: 176
10153 TTCATCCAGG
* * * *
10163 AACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCACAACTTGCTTACAA
1 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGCTTACAA
* * ***
10228 AATGAAAAACTATTTAGACCAAATGATACGATTTCCTTCGCATGGAATGCTCGAAAAATTACTCG
66 AATGAAAAACTATTTAGACCAAATGATACAACTTCCAAAGCATGGAATGCTCGAAAAATTACTCG
10293 AAGGAATGGATCGTAAAAGTTTGACAATTTCATATGTTCGTCCAAA
131 AAGGAATGGATCGTAAAAGTTTGACAATTTCATATGTTCGTCCAAA
* * * *
10339 AACCAAGAGAGAAACAATTCTCACGTAATTAAGTATTTAATTCAAAGGCCAAAATTTGTTTACAA
1 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGCTTACAA
* * * * * *
10404 AATGACAAACTTTTTAGACCAAATGATGCAACTTCCAAAGCATGTAATGTTCGAAAAATTGCTCG
66 AATGAAAAACTATTTAGACCAAATGATACAACTTCCAAAGCATGGAATGCTCGAAAAATTACTCG
*
10469 AAGGATTGGATCGT
131 AAGGAATGGATCGT
10483 CTTGAACACT
Statistics
Matches: 124, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
176 124 1.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.28
Consensus pattern (176 bp):
AACCAAGAGAGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAACTTGCTTACAA
AATGAAAAACTATTTAGACCAAATGATACAACTTCCAAAGCATGGAATGCTCGAAAAATTACTCG
AAGGAATGGATCGTAAAAGTTTGACAATTTCATATGTTCGTCCAAA
Found at i:10753 original size:216 final size:215
Alignment explanation
Indices: 10303--10840 Score: 578
Period size: 216 Copynumber: 2.5 Consensus size: 215
10293 AAGGAATGGA
* ** * *
10303 TCGTAAAAGTTTGACAATTTCATATGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAT
1 TCGTAAAAGTTTGACAAGTTCGGATGTTC-TTCAAAAACCAAGAGAGAAACAATTCTCACGTAAA
* ** ** * *
10368 TAAGTATTTAATTCAAAGGCCAAAATTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGC
65 TAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGC
* * * * * * *
10433 AACTTCCAAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAACACTTTCAG
130 AACTTCCAAAGCATGGAAAGTTCGAAAAATTACTCCAAGGAATGGATCATCTTGAACACTTTAAG
** **
10498 GAACCGAAGCTATCAGTGAAC
195 GAACCGAAGCTAAAAAAGAAC
* * * **
10519 CCGTAATTA-TTCGACAAGTTCGGATGTTCTTCGAGGAACCAAGAGAGAAACAATTCTCACGTAA
1 TCGTAA-AAGTTTGACAAGTTCGGATGTTCTTC-AAAAACCAAGAGAGAAACAATTCTCACGTAA
* * *
10583 ATAAGTTTTTATTTCAAAGATCAAAACATGTTTTCGAAATGAAAAACTATTTAGACCAAAAT-AT
64 ATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACC-AAATGAT
* * ** *
10647 GCGATTTCTC-TCGCATGGAAAGTTCGAAAAATTACTCCATGGAATGGATCATCTTGAACACTTT
128 GCAACTTC-CAAAGCATGGAAAGTTCGAAAAATTACTCCAAGGAATGGATCATCTTGAACACTTT
* * **
10711 AAGGAACTGGATTTAAAAAAGAAC
192 AAGGAACCGAAGCTAAAAAAGAAC
* * * * *
10735 TCGTAAAAGTTTGACAAGTTTGGAAGTACGTTCAACAACCAAGAAAGAAACAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAGTTCGGATGTTC-TTCAAAAACCAAGAGAGAAACAATTCTCACGTAAA
* *
10800 TAAGTTTTTAATTCAAACATCAAATCATGTTTACAAAATGA
65 TAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA
10841 TGCGATTTCC
Statistics
Matches: 262, Mismatches: 54, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
215 3 0.01
216 250 0.95
217 9 0.03
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (215 bp):
TCGTAAAAGTTTGACAAGTTCGGATGTTCTTCAAAAACCAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCA
ACTTCCAAAGCATGGAAAGTTCGAAAAATTACTCCAAGGAATGGATCATCTTGAACACTTTAAGG
AACCGAAGCTAAAAAAGAAC
Found at i:10981 original size:195 final size:194
Alignment explanation
Indices: 10639--11011 Score: 525
Period size: 195 Copynumber: 1.9 Consensus size: 194
10629 CTATTTAGAC
* * * * *
10639 CAAAATATGCGATTTCTCTCGCATGGAAAGTTCGAAAAATTACTCCATGGAATGGATCATCTTGA
1 CAAAATATGCGATTTCCCTCGAATGGAAAGTTCGAAAAATTACTCAAAGGAATAGATCATCTTGA
* * * * *
10704 ACACTTTAAGGAACTGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTACGTTCA
66 ACACTTTAAGGAACTGAATTCAAAAAAGAACTCGTAAAAATTTGACAAGTTTGCAAGTACGTCCA
* *
10769 ACAACCAAGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACATCAAATCATGTTTA
131 ACAACCAAGAAAGAAACAATTATAACGTAAATAAGTTTTTAATTCAAACATCAAATCATGTTTA
* * **
10833 CAAAATGATGCGATTTCCCTCGAATGGAATGTTCGAAAAATTGCTCAAAGGAATAGATTGTCTTG
1 CAAAAT-ATGCGATTTCCCTCGAATGGAAAGTTCGAAAAATTACTCAAAGGAATAGATCATCTTG
* *
10898 AACACTTTAAGGAATTGAATTCAAAAAAGAACTCGTAAAAATTTGACAA-TTT-CATATGTTCGT
65 AACACTTTAAGGAACTGAATTCAAAAAAGAACTCGTAAAAATTTGACAAGTTTGCA-A-GTACGT
* *
10961 CCAACAACTAAGAGAGAAACAATTATAACGTAAATAAGTTTTTAATTCAAA
128 CCAACAACCAAGAAAGAAACAATTATAACGTAAATAAGTTTTTAATTCAAA
11012 GGCCAACACT
Statistics
Matches: 156, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
193 1 0.01
194 10 0.06
195 145 0.93
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (194 bp):
CAAAATATGCGATTTCCCTCGAATGGAAAGTTCGAAAAATTACTCAAAGGAATAGATCATCTTGA
ACACTTTAAGGAACTGAATTCAAAAAAGAACTCGTAAAAATTTGACAAGTTTGCAAGTACGTCCA
ACAACCAAGAAAGAAACAATTATAACGTAAATAAGTTTTTAATTCAAACATCAAATCATGTTTA
Found at i:11249 original size:216 final size:215
Alignment explanation
Indices: 10835--12182 Score: 1326
Period size: 216 Copynumber: 6.2 Consensus size: 215
10825 CATGTTTACA
* ** * * * * * *
10835 AAATGATGCGATTTCCCTCGAATGGAATGTTCGAAAAATTGCTCAAAGGAATAGATTGTCTTGAA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
** * * * *
10900 CACTTTAAGGAATTGAATTCAAAAAAGAACTCGTAAAAATTTGACAATTTCATATGTTCGTCCAA
66 CACTTTAAGGAACCGAATT-AAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAA
* * * * * * *
10965 CAACTAAGAGAGAAACAATTATAACGTAAATAAGTTTTTAATTCAAAGGCCAACACTTGTTCACA
130 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
11030 AAATGACAAACCTTTTAGACC
195 AAATGACAAACCTTTTAGACC
* ** * *
11051 AAATGGTGCGACTTCCCGAGCATGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGCA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * ** * *
11116 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAATTCGACAAGTTCGGAAGTTCATCCAG
66 CACTTTAAGGAACCGAA-TTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAA
* * *
11181 GAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTATTTACA
130 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* *
11246 AAATGACAAACTTTTTAAACC
195 AAATGACAAACCTTTTAGACC
* * * * * * * * *
11267 AAACGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCAAAGTATTGAAACGTC-CGGA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * *
11331 CTACTGTAAGGAACCGAAGCTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCCTCCA
66 C-ACTTTAAGGAACCGAA-TTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCA
* * * * * *
11396 AGAACAAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATATCAAAACATGTTTAC
129 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
*
11461 AAAATG--AAACACTATTTAGATC
194 AAAATGACAAAC-CT-TTTAGACC
* ** * * * * *
11483 AAATGATGCGATTTCCCTCGTATGGAATGTGT-GGAAAATTACTCGAAAGAATGGATTGTCTTGA
1 AAATGATGCGACTTCCCGAGCATGTAATGT-TCGGAAAATTGCTCGAAGGAATGGATCGTCTTGA
* * * *
11547 ACACTTTAAGGAACTGGAATTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTGCA
65 ACACTTTAAGGAAC-CGAATTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCA
* * * * *
11612 ACAACCAAGAGAGAAATAATTCTCACGTAAATAATTTTTTAATTTAATGACCAAAACTTGTTTAC
129 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
*
11677 AAATTGACAAACCTTTTAGACC
194 AAAATGACAAACCTTTTAGACC
*** * * * * * *
11699 AAATGATAAAACTTCCCGAGCATGCAATGTTCGGAAAATTGC-AGGACGAATTGGATCATCTTGC
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGAA-TGGATCGTCTTGA
* * * * * ** *
11763 ATACATTAAGGAACTGAAGTTATAAAAGAACTCGGAAAAGTTCAACAAGTTCAGAAGTTCGTCCA
65 ACACTTTAAGGAACCGAA-TTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCA
* * * * *
11828 AGAAGCAAGAGAGACACAATTCTCACGTAAATAATTTTTTTATTCAAAGATCAAAA-TATG-TTA
129 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT-TGTTTA
*
11891 CCAAAATGA-AAAACTATTTAGACC
193 -CAAAATGACAAACCT-TTTAGACC
* * ** * *** * * *
11915 AAATGATGTGATTTCCCTCGCATGGAATGTTTTTAAAAATTACTCGAAGGAATAGATCATCTTGA
1 AAATGATGCGACTTCCCGAGCATGTAATG-TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGA
** * * * * *
11980 ACACTTTAAGGAGTCGGATTCAAAAAAGAACTCGTAAAAGTTTAACAATTTCATATGTTCGTCCA
65 ACACTTTAAGGAACCGAATT-AAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCA
* * * * * *
12045 AAAACCAAGCGACAAACAATTCTCACGTAATTAAGTTTTTAATTCAAAGGCCAAAATTTGTTTAC
129 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
**
12110 AAAATGACAAAATTTTTAGACC
194 AAAATGACAAACCTTTTAGACC
*
12132 AAATGATGCGACTTCCTGAGCATGTAATGTTCGGAAAATTGCTCGAAGGAA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGAA
12183 CCGAAGCTAG
Statistics
Matches: 925, Mismatches: 186, Indels: 42
0.80 0.16 0.04
Matches are distributed among these distances:
214 4 0.00
215 21 0.02
216 715 0.77
217 167 0.18
218 18 0.02
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (215 bp):
AAATGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
CACTTTAAGGAACCGAATTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAG
AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
AATGACAAACCTTTTAGACC
Found at i:11642 original size:432 final size:431
Alignment explanation
Indices: 10835--14587 Score: 3823
Period size: 432 Copynumber: 8.8 Consensus size: 431
10825 CATGTTTACA
* ** * * * * * *
10835 AAATGATGCGATTTCCCTCGAATGGAATGTTC-GAAAAATTGCTCAAAGGAATAGATTGTCTTGA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAG-AAAATTGCTCAAAGGATTGGATCGTC-TGG
* ** * * * * * *
10899 AC-ACTTTAAGGAATTGAA-TTCAAAAAAGAACTCGTAAAAATTTGACAATTTC-ATATGTTCGT
64 ACTACTGTAAGGAACCGAAGCT-ATAAAAGAACTCGTAAAAGTTCGACAAGTTCGA-AAGTTCGT
* * * ** * *
10961 CCAACAACTAAGAGAGAAACAATTATAACGTAAATAAGTTTTTAATTCAAAGGCCAACACTTGTT
127 CCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTT
* * * * ** * *
11026 CACAAAATGACAAACCT-TTTAGACCAAATGGTGCGACTTCCCGAGCATGTAATGTTCAAAAAAT
191 TACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAAT
* * * * * * *
11090 TGCTCGAAGGATTGGATCGTCTTGCATACTTTAAGGAAC-CGAAGCTATAAAAGAACTCGTAAAA
255 TACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAA-TTAAAAAAGAACTCGTAAAA
* * * * ** *
11154 ATTCGACAAGTTCGGAAGTTCATCCAGGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTT
319 GTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
11219 TAATTCAAAGGCCAAAACTTATTTACAAAATGACAAACTTTTTAAACC
384 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
* * * * *
11267 AAACGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCAAAGTATTGAAACGTCCGGAC
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCAAAGGATTGGATCGTCTGGAC
* * *
11332 TACTGTAAGGAACCGAAGCTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCCTCCAA
66 TACTGTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAA
* * *
11397 GAACAAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAATATCAAAACATGTTTACA
131 GAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACA
* * * *
11462 AAATGAAACACTATTTAGATCAAATGATGCGATTTCCCTCGTATGGAATGTGT-GGAAAATTACT
195 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGT-TCGAAAAATTACT
* * *
11526 CGAAAGAATGGATTGTCTTGAACACTTTAAGGAACTGGAATTAAAAAAGAACTAGTAAAAGTTTG
259 CGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAATTAAAAAAGAACTCGTAAAAGTTTG
* * *
11591 ACAAGTTCGAAAGTTCGTGCAACAACCAAGAGAGAAATAATTCTCACGTAAATAATTTTTTAATT
324 ACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * *
11656 TAATGACCAAAACTTGTTTACAAATTGACAAACCTTTTAGACC
389 CAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
*** * * *** * * * *
11699 AAATGATAAAACTTCCCGAGCATGCAATGTTCGGAAAATTGCAGGACGAATTGGATCATCTTG-C
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCAAAGGATTGGATCGTCTGGAC
* * * *
11763 ATACAT-TAAGGAACTGAAGTTATAAAAGAACTCGGAAAAGTTCAACAAGTTC-AGAAGTTCGTC
66 -TAC-TGTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGA-AAGTTCGTC
* * * *
11826 CAAGAAGCAAGAGAGACACAATTCTCACGTAAATAATTTTTTTATTCAAAGATCAAAATATG-TT
128 CAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTT
* **
11890 ACCAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCTCGCATGGAATGTTTTTAAAAAT
192 A-CAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATG-TTCGAAAAAT
* * *
11955 TACTCGAAGGAATAGATCATCTTGAACACTTTAAGG-AGTCGG-ATTCAAAAAAGAACTCGTAAA
255 TACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACT-GGAATT-AAAAAAGAACTCGTAAA
* * * * * * *
12018 AGTTTAACAATTTC-ATATGTTCGTCCAAAAACCAAGCGACAAACAATTCTCACGTAATTAAGTT
318 AGTTTGACAAGTTCGA-AAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
12082 TTTAATTCAAAGGCCAAAATTTGTTTACAAAATGACAAAATTTTTAGACC
382 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
*
12132 AAATGATGCGACTTCCTGAGCATGTAATGTTC-G------G----AA--A----A---T-T-G-C
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCAAAGGATTGGATCGTCTGGAC
** * * * * *
12174 T-C-G-AAGGAACCGAAGCTAGT-AGTGAACCCGTAAATA-TTCGACAAGTTTGGATGTTCTTCC
66 TACTGTAAGGAACCGAAGCTA-TAAAAGAACTCGTAAA-AGTTCGACAAGTTCGAAAGTTCGTCC
* * * *
12234 AGGAACCA-AGAG--ACAATTCTCACGTAAATAAGTTTTTATTTCAAAGATCAAAACATGTTTTC
129 AAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC
* * ** **
12296 GAAATGAAAAACTATTTAGACCAAAAGATGCGATTTCCCTATCATGGAAAATTCGAAAAATTACT
194 AAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACT
* * **
12361 CCAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTAAAATTGAACTCGTAAAAGTTTG
259 CGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAATTAAAAAAGAACTCGTAAAAGTTTG
* * *
12426 ACAAGTTTGGAAGTAT-GTTCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
324 ACAAGTTCGAAAGT-TCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * *
12490 TCAAAGATCAAATCATGTTTACAAAATGAAAAACTATTTAGACC
388 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
* ** * * * * *
12534 AAATGATGCGATTTCCCTTGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATAGATCGTCTTGA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAG-AAAATTGCTCAAAGGATTGGATCGTC-TGG
* ** * * * * * *
12598 AC-ACTTTAAGGAATTGGA-TTAAAAAAAGAACTCGTAAAAGTTTGACAATTTC-ATATGTTCGT
64 ACTACTGTAAGGAACCGAAGCT-ATAAAAGAACTCGTAAAAGTTCGACAAGTTCGA-AAGTTCGT
* * * ** * *
12660 CCAACAACTAAGAGAGAAACAATTGTCACATAAATAAGTTTTTAATTCAAAGGCCAACACTTGTT
127 CCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTT
* * * ** *
12725 TACAAAATGACAAACCT-TTTAGACCAAATGATGCAACTTCCCGAGCATGAAATGTTCGAAAAAT
191 TACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAAT
* * * * * * * *
12789 TGCTCGAAGGATTGAATCGTCTTGCATACTTTAAGGAA-TCGAAGCTATAAAAGAACTCGTAAAA
255 TACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAA-TTAAAAAAGAACTCGTAAAA
* ** * ** * *
12853 ATTCAACAAGTTCGAAAGTTCATCCAGGAACCAAGAGAGAAATAATTCTCACATAAATAAGTTTT
319 GTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
12918 TAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTTTTTAGACC
384 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
* * * * * * * *
12966 AAACGAGGCGACTTCCCGAGCATGTAATGTTCAGAAATTTGCTTAAAGTATTGAAACGTCCGGAC
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCAAAGGATTGGATCGTCTGGAC
* * *
13031 TACTGTAAGGAATCGAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCGAAAGTTCCTCCAA
66 TACTGTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAA
*
13096 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACA
131 GAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACA
* * ** *
13161 AAATGAAATACTATTTAGACTAAATGATGCGATTTCCCTCATATGGAATGTGCGAAAAATTACTC
195 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTC
* * * *
13226 GAAAGAATGGATCGTCTTGAACACTTTAAGGAACTAGATTTAAAAAAGAACTAGTAAAAGTTTGA
260 GAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAATTAAAAAAGAACTCGTAAAAGTTTGA
* * *
13291 CAAGTTCGAAAGTTCATCCAACAACCAGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTT
325 CAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
13356 AATGACCAAAACTTGTTTACAAAATGACAAACCTTTTAGACC
390 AAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
*** * * * ** * * * *
13398 AAATGATAAAACTTTCTGAGCATGCAATGTTTGGAAAACTG-T-AGGACGGATTGGATCATCTTG
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCA--AAGGATTGGATCGTCTGG
* * * *
13461 -CATACAT-TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTCAACAAGTTCGGAAGTTCGT
64 AC-TAC-TGTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGT
* * * *
13524 CCAAGAAGCAAGAGAGACACAATTCTCACGTAAATAATTTTTTTATTCAAAGATCAAAATATGTT
127 CCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTT
* * * **
13589 TCCAAAATGAAAAACTATTTGGACCAAATGATGTGATTTCCCTCGCATGGAATGTTTTTAAAAAT
191 TACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATG-TTCGAAAAAT
* * *
13654 TACTCGAAGGAATAGATCCTCTTGAACACTTTAAGGAA-T-CAGATTCAAAAAAGAACTCGTAAA
255 TACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGA-ATT-AAAAAAGAACTCGTAAA
* * *
13717 AGTTTGACAATTTC-ATATGTTCGTCCGAA-AACCAAGAGAGAAACAATTCTCACGTAATTAAGT
318 AGTTTGACAAGTTCGA-AAGTTCGTCC-AACAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * *
13780 TTTTTATTCAAAGGCCAAAATTTGTTTACAAAATGACAAACTTTTTAGATC
381 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
* * *
13831 AAATGTTGCGACTTCCCGAGCATGTAATGTTC-GAAAAATTGCTCGAAGGATTGGATCGTCTTGA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAG-AAAATTGCTCAAAGGATTGGATCGTC-TGG
* ** ** * * *
13895 AC-ACTTTAAGGAACCGAAGCTAGCAGTGAACCCGTAAATA-TTCGACAAGTTCGAATGTTCTTC
64 ACTACTGTAAGGAACCGAAGCTATAAAAGAACTCGTAAA-AGTTCGACAAGTTCGAAAGTTCGTC
* *
13958 CAGGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGATCAAAACATGTTT
128 CAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTT
* * * * *
14023 TCGAAATG-AAAACTATTTAGATCAGAA-GATGCGATTTCCCTCGCATGGAAAGTTCGGAAAATT
192 ACAAAATGAAAAACTATTTAGACCA-AATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATT
* *
14086 ACTCCAAGGAATGGATCATCTTGAACACTTTAAGGAACT-GAATTTAAAAAAGAACTCGTAAAAG
256 ACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAA-TTAAAAAAGAACTCGTAAAAG
* *
14150 TTTGACAAGTTC-AGAAGTTCGTCCAACAACGAAGAGAGAAACAATTGTCACGTAAATAAGTTTT
320 TTTGACAAGTTCGA-AAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
14214 TAATTCAAAGGCCAAAACATGTTTACAAATTTACAAACTTTTTAGACC
384 TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
* * * *
14262 AAATGATGTGACTTCCCGAGCATGTAATGTT-AGAAAAATTGCTCAAAGGTTTGGATTGTCTTGA
1 AAATGATGCGACTTCCCGAGCATGTAATGTTCAG-AAAATTGCTCAAAGGATTGGATCGTCTGGA
* * * * * * *
14326 ATACTTTAAGGAACAGAAGTTAGAAAAAAACTCGTAAAAGTTCGACAAGTTTGAAAGTTCGTCCA
65 CTACTGTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCA
* * * *
14391 AGAACTAA-A-AGAGACAATTCTCACATAAATAAGTTTTTAATTCAAATATCAAAACTTGTTTAC
130 AGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC
* ** * * * *
14454 AAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCAAGAATGGATTGTTCGAAAAAGTGCT
194 AAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACT
* * * * * * * *
14519 AGAAGGAACGGATCGTCTTGAATACTTTAATGAACT-AAAGCTATAAAAGAACTCATAAAAGTTT
259 CGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAA-TTAAAAAAGAACTCGTAAAAGTTT
14583 GACAA
323 GACAA
14588 TTCTCACGTG
Statistics
Matches: 2735, Mismatches: 489, Indels: 196
0.80 0.14 0.06
Matches are distributed among these distances:
402 179 0.07
403 91 0.03
404 2 0.00
405 4 0.00
406 2 0.00
407 45 0.02
408 2 0.00
409 2 0.00
410 1 0.00
411 2 0.00
412 1 0.00
413 3 0.00
415 1 0.00
416 1 0.00
419 1 0.00
420 1 0.00
422 2 0.00
424 1 0.00
426 3 0.00
427 2 0.00
428 42 0.02
429 56 0.02
430 115 0.04
431 295 0.11
432 1365 0.50
433 510 0.19
434 5 0.00
435 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (431 bp):
AAATGATGCGACTTCCCGAGCATGTAATGTTCAGAAAATTGCTCAAAGGATTGGATCGTCTGGAC
TACTGTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAA
GAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAA
AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCG
AAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGAATTAAAAAAGAACTCGTAAAAGTTTGAC
AAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
AAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACC
Found at i:12547 original size:216 final size:215
Alignment explanation
Indices: 12197--14587 Score: 2377
Period size: 216 Copynumber: 11.1 Consensus size: 215
12187 AGCTAGTAGT
* * * * * *
12197 GAACCCGTAAATA-TTCGACAAGTTTGGATGTTCTTCCAGGAACC-A-AGAG--ACAATTCTCAC
1 GAACTCGTAAA-AGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
12257 GTAAATAAGTTTTTATTTCAAAGATCAAAACATGTTTTCGAAATGAAAAACTATTTAGACCAAAA
65 GTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAAT
* ** * *
12322 GATGCGATTTCCCTATCATGGAAAATTCGAAAAATTACTCCAAGGAATGGATCGTCTTGAACACT
130 GATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACT
*
12387 TTAAGGAACTGGATTTAAAATT
195 TTAAGGAACTGGATTTAAAA-A
* * * * *
12409 GAACTCGTAAAAGTTTGACAAGTTTGGAAGTAT-GTTCAACAACCAAGAGAGAAACAATTCTCAC
1 GAACTCGTAAAAGTTCGACAAGTTCGAAAGT-TCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
*
12473 GTAAATAAGTTTTTAATTCAAAGATCAAATCATGTTTACAAAATGAAAAACTATTTAGACCAAAT
65 GTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAAT
* *
12538 GATGCGATTTCCCTTGCATGGAATGTTCGAAAAATTGCTCGAAGGAATAGATCGTCTTGAACACT
130 GATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACT
* *
12603 TTAAGGAATTGGATTAAAAAAA
195 TTAAGGAACTGGATT-TAAAAA
* * * * * *
12625 GAACTCGTAAAAGTTTGACAATTTC-ATATGTTCGTCCAACAACTAAGAGAGAAACAATTGTCAC
1 GAACTCGTAAAAGTTCGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* ** * * *
12689 ATAAATAAGTTTTTAATTCAAAGGCCAACACTTGTTTACAAAATGACAAACCT-TTTAGACCAAA
65 GTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-AAAACTATTTAGACCAAA
* * * * * * * *
12753 TGATGCAACTTCCCGAGCATGAAATGTTCGAAAAATTGCTCGAAGGATTGAATCGTCTTGCATAC
129 TGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACAC
* **
12818 TTTAAGGAA-TCGAAGCTATAAAA
194 TTTAAGGAACT-GGATTTA-AAAA
* * * * * *
12841 GAACTCGTAAAAATTCAACAAGTTCGAAAGTTCATCCAGGAACCAAGAGAGAAATAATTCTCACA
1 GAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * * *
12906 TAAATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTTTTTAGACCAAACG
66 TAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATG
* * * * * ** * * * * * *
12971 AGGCGACTTCCCGAGCATGTAATGTTC-AGAAATTTGCTTAAAGTATTGAAACGTC-CGGACTAC
131 ATGCGATTTCCCTAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAAC-AC
* * **
13034 TGTAAGGAA-TCGAAGCTATAAAA
194 TTTAAGGAACT-GGATTTA-AAAA
* * *
13057 GAACTCATAAAAGTTCGACAAGTTCGAAAGTTCCTCCAAGAACCAAGAGAGAAACAATTCTCACA
1 GAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* *
13122 TAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAATACTATTTAGACTAAATG
66 TAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATG
* * * *
13187 ATGCGATTTCCCTCA-TATGGAATGTGCGAAAAATTACTCGAAAGAATGGATCGTCTTGAACACT
131 ATGCGATTTCCCT-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACT
*
13251 TTAAGGAACTAGATTTAAAAAA
195 TTAAGGAACTGGATTT-AAAAA
* * * * *
13273 GAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAACAACCAGGAGAGAAACAATTCTCACG
1 GAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * *
13338 TAAATAAGTTTTTAATTTAATGACCAAAACTTGTTTACAAAATGACAAACCT-TTTAGACCAAAT
66 TAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGA-AAAACTATTTAGACCAAAT
*** * * * * * * * * * *
13402 GATAAAACTTT--CTGAGCATGCAATGTTTGGAAAACTG-TAGGACGGATTGGATCATCTTGCAT
130 GATGCGA-TTTCCCT-AGCATGGAATGTTCGAAAAATTGCT-CGAAGGAATGGATCGTCTTGAAC
* * *
13464 ACATTAAGGAACTGAAGTTATAAAA
192 ACTTTAAGGAACTGGATTTA-AAAA
* * * *
13489 GAACTCGTAAAAGTTCAACAAGTTCGGAAGTTCGTCCAAGAAGCAAGAGAGACACAATTCTCACG
1 GAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * *
13554 TAAATAATTTTTTTATTCAAAGATCAAAATATGTTTCCAAAATGAAAAACTATTTGGACCAAATG
66 TAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATG
* * ** * * *
13619 ATGTGATTTCCCTCGCATGGAATGTTTTTAAAAATTACTCGAAGGAATAGATCCTCTTGAACACT
131 ATGCGATTTCCCTAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACT
* *
13684 TTAAGGAA-TCAGATTCAAAAAA
195 TTAAGGAACT-GGATT-TAAAAA
* * *
13706 GAACTCGTAAAAGTTTGACAATTTC-ATATGTTCGTCCGAA-AACCAAGAGAGAAACAATTCTCA
1 GAACTCGTAAAAGTTCGACAAGTTCGA-AAGTTCGTCC-AAGAACCAAGAGAGAAACAATTCTCA
* * ** ** * * *
13769 CGTAATTAAGTTTTTTATTCAAAGGCCAAAATTTGTTTACAAAATGACAAACTTTTTAGATCAAA
64 CGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAA
* * * * *
13834 TGTTGCGACTTCCCGAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAACAC
129 TGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACAC
* * ** * **
13899 TTTAAGGAACCGAAGCTAGCAGT
194 TTTAAGGAACTGGATTTA-AAAA
* * * *
13922 GAACCCGTAAATA-TTCGACAAGTTCGAATGTTCTTCCAGGAACCAAGAGAGAAACAATTCTCAC
1 GAACTCGTAAA-AGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
13986 GTAAATAAGTTTTTATTTCAAAGATCAAAACATGTTTTCGAAATG-AAAACTATTTAGATCAGAA
65 GTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCA-AA
* * * * * *
14050 -GATGCGATTTCCCTCGCATGGAAAGTTCGGAAAATTACTCCAAGGAATGGATCATCTTGAACAC
129 TGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACAC
*
14114 TTTAAGGAACTGAATTTAAAAAA
194 TTTAAGGAACTGGATTT-AAAAA
* * * *
14137 GAACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCGTCCAACAACGAAGAGAGAAACAATTGTCAC
1 GAACTCGTAAAAGTTCGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
** * * * *
14201 GTAAATAAGTTTTTAATTCAAAGGCCAAAACATGTTTACAAATTTACAAACTTTTTAGACCAAAT
65 GTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAAT
* * * * * * ** * *
14266 GATGTGACTTCCCGAGCATGTAATGTTAGAAAAATTGCTCAAAGGTTTGGATTGTCTTGAATACT
130 GATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACT
* * *
14331 TTAAGGAACAGAAGTTAGAAAA
195 TTAAGGAACTGGATTTA-AAAA
* * * * *
14353 AAACTCGTAAAAGTTCGACAAGTTTGAAAGTTCGTCCAAGAACTAA-A-AGAGACAATTCTCACA
1 GAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* *
14416 TAAATAAGTTTTTAATTCAAATATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATG
66 TAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATG
* * * * * * * *
14481 ATACGATTTCCCAAGAATGGATTGTTCGAAAAAGTGCTAGAAGGAACGGATCGTCTTGAATACTT
131 ATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTT
* ** **
14546 TAATGAACTAAAGCTATAAAA
196 TAAGGAACTGGATTTA-AAAA
* *
14567 GAACTCATAAAAGTTTGACAA
1 GAACTCGTAAAAGTTCGACAA
14588 TTCTCACGTG
Statistics
Matches: 1795, Mismatches: 336, Indels: 94
0.81 0.15 0.04
Matches are distributed among these distances:
211 1 0.00
212 33 0.02
213 2 0.00
214 160 0.09
215 201 0.11
216 1198 0.67
217 196 0.11
218 4 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (215 bp):
GAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
TAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAAATG
ATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTT
TAAGGAACTGGATTTAAAAA
Found at i:14715 original size:180 final size:180
Alignment explanation
Indices: 14403--14764 Score: 485
Period size: 180 Copynumber: 2.0 Consensus size: 180
14393 AACTAAAAGA
* *
14403 GACAATTCTCACATAAATAAGTTTTTAATTCAAATATCAAAACTTGTTTACAAAATGAAAAACTA
1 GACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTA
* ** *
14468 TTTAGACCAAATGATACGATTTCCCAAGAATGGATTGTTCGAAAAAGTGCTAGAAGGAACGGATC
66 TTTACACCAAATGATACGACATCCCAAGAATGGAATGTTCGAAAAAGTGCTAGAAGGAACGGATC
* *
14533 GTCTTGAATACTTTAATGAACTAAAGCTATAAAAGAACTCATAAAAGTTT
131 GTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCATAAAAGTTT
* * * *
14583 GACAATTCTCACGTGAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACT-
1 GACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTA
* * * * * * *
14647 TCTTACACCAAATGATGCGACATCCCAAGCATGTAATGTTCGAAAAATTGTTCGAAGGATTC-GA
66 T-TTACACCAAATGATACGACATCCCAAGAATGGAATGTTCGAAAAAGTGCTAGAAGGA-ACGGA
* * * *
14711 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGATCTCGTAAAAGTTT
129 TCGTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCATAAAAGTTT
14763 GA
1 GA
14765 TAAGTTCAGA
Statistics
Matches: 157, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
179 1 0.01
180 155 0.99
181 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (180 bp):
GACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTA
TTTACACCAAATGATACGACATCCCAAGAATGGAATGTTCGAAAAAGTGCTAGAAGGAACGGATC
GTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCATAAAAGTTT
Found at i:14972 original size:216 final size:215
Alignment explanation
Indices: 14584--20167 Score: 5909
Period size: 216 Copynumber: 26.0 Consensus size: 215
14574 TAAAAGTTTG
* ** *
14584 ACAATTCTCACGTGAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACT-T
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * ** * *
14648 CTTACACCAAATGATGCGACATCCCAAGCATGTAATGTTCGAAAAATTGTTCGAAGGATTCGATC
66 -TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * * * * * *
14713 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGATCTCGTAAAAGTTTGATAAGTTCAGAAGT
130 GTCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* *
14778 TCATCCAAGAACCAAGAGAGAC
194 TCGTCCAAGAACCAAGAGAGAA
* * * * *
14800 ATAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAACTTCTTTATAAAATGAAAAACAAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * *
14865 TTAGACCAAATGATGTGATTTCCCACGCAAGGAATGTTCGAAAAATTACACGAAGGAATAGATCA
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* *
14930 TCTTAAACACTTTAAGGTATCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
131 TCTTGAACACTTTAAGG-AACAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* *
14995 CGTCCAACAACCAAGGGAGAA
195 CGTCCAAGAACCAAGAGAGAA
* * * ** * *
15016 ATAATTGTCACGTAATTAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGAGAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * * *
15081 TTAGACCAAATGATGCGACTTCCAAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTAGATTG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* * ** *
15146 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
131 TCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
15211 CGTCCAAGAACCAAGAGAGAA
195 CGTCCAAGAACCAAGAGAGAA
*
15232 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * *** * * *
15297 TTAGACCAAACGATGCGATTTTCTTTGCATGGAATGTTCAAAAAATTACACTAAGGAATGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* * * * * * * *
15362 TCTTAAACAGTTGACGGACCCGGATTTAAAAAAGTACTCCTAAAAGTTTGACAAGTTCGGAAGTT
131 TCTTGAACACTTTAAGGA-ACAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * *
15427 -GTCCAATAGCCAAGAGAAAA
195 CGTCCAAGAACCAAGAGAGAA
* * * ** * *
15447 ATAATTGTCACATAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * ** ** * *
15512 TTAGACCAAATGATGCCACTTCTCGA-GCATGTAATGTTCGGGAAATTGTTTGAAGGATTGGATC
66 TTAGACCAAATGATGCGACTTC-CCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * * * * * * *
15576 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC-CTGTAAAAGATCGAAAAGTTCAGAAG
130 GTCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTC-GTAAAAGTTTGACAAGTTCGGAAG
* * * *
15640 TTCGTCAAAGAACAAAGAGGGAC
193 TTCGTCCAAGAACCAAGAGAGAA
* * *
15663 ACAATTCTAACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACNAAATAAAAAACTAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * *
15728 TTAGACCAAATGATGCGATTTCCCTCGCATGGAACGTTCGAAAAATTACTCGAAGGAATGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* * *
15793 TCTTGAACACTTGAAGTAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTT
131 TCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* *
15858 CGTCCAACAACCAAGGGAGAA
195 CGTCCAAGAACCAAGAGAGAA
* * ** * *
15879 ACAATTGAT-AAGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTT
1 ACAATT-CTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * ** * * * * *
15943 TTTAGACCAAATGATACGACTTCCCAAGCATGTCATGTTCGGAAAATTGCTCAAAGGATTGGAAC
65 TTTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * ** * * **
16008 GTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCAAAAGT
130 GTCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* *
16073 TCATCCAGGAACCAAGAGAGAA
194 TCGTCCAAGAACCAAGAGAGAA
* * *
16095 ACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAAATAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * ** *
16160 TTAGACCAAATGGTGCGATTTCCCTCGCATGGAATGTTAAAAAAATTACACGAAGG-A---AT-G
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* *
16220 ----G-ACACTTTAAGGAATCAGATTTAAAAAAGTACTCCTAAAAGTTTGACAAGTGT-GGAAGT
131 TCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGT
* * * *
16279 T-GTCCAACATCCAGGAGACAA
194 TCGTCCAAGAACCAAGAGAGAA
* ** * *
16300 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTGTACAAAATGAAAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * * *
16365 TTAGACCAAATGATACAACTTCCCGA-GCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGATA
66 TTAGACCAAATGATGCGACTTCCC-ACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * * ** * * **
16429 GTGTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAATTCAACAAGTTCGGAAGT
130 GTCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
16494 TCGTCCAAGAACCAAGAGAGAA
194 TCGTCCAAGAACCAAGAGAGAA
* *
16516 ACAATTCTCACGTAGATAAGTTTTTAATTCGAAGATCAAAA-TATGTTTACAAAATGAAAAACTA
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT-TGTTTACAAAATGAAAAACTA
* * * * *
16580 TTTAGACCAAATGGTGCGATTTCCCTCGCGTGGAATGTTCGAAAAATTACACGAAGGAATGGATC
65 TTTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* ** * *
16645 GTCTTAAACACTTTAAGGAATCAGATTTAAAAAAGTTCCCCTAAAAGTTTGACAAGTTCGGAAGT
130 GTCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* *
16710 T-GTCCAACAACCAAGAGAGAG
194 TCGTCCAAGAACCAAGAGAGAA
* * ** * *
16731 ACAATTGTCAC-AAAATAAG--TTT--TT--AAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * * *
16789 TTAGACCAAACGATACAACTTCCCGA-GCATGTAATGTTCGAAAAATTGCTCGATGGATTGGATC
66 TTAGACCAAATGATGCGACTTCCC-ACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * * ** * * **
16853 GTGTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCGTTAAAGTTCAACAAGTTCGGAAGT
130 GTCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
16918 TCGT-------CCAAG-GAGAA
194 TCGTCCAAGAACCAAGAGAGAA
* * *
16932 ACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAGAATGAAAAACTAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* ** * *
16997 TTAGACCAAATGATGCGATTTCCCTTGCATGGAATGTTTGAAAAATTACTCAAAGGAATGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* * *
17062 TCTTAAACCCTTCAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
131 TCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* *
17127 CATCCAACAACCAAGAGAGAA
195 CGTCCAAGAACCAAGAGAGAA
* ** *
17148 ACAATTGTCACG-AAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACT-T
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * **
17211 TTAGACCAAATGATGCGACTTCCCAAGTATGTAATGTTC-AGAAAATTGCTCGAAGGCTTGGATC
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGA-AAAATTACTCGAAGGAATGGATC
* * * ** * ** * *
17275 GTGTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCAACAGGTTCGAAAGT
130 GTCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
17340 TCGTCCAAGAACCAAGAGAGAA
194 TCGTCCAAGAACCAAGAGAGAA
* * *
17362 ACAATTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACAAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * *
17427 TTAGACCAAATGATGCGATTTCCCTCACATGGAATGTTCGAAAAATTACACGAAGGAATGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* *
17492 TCTTAAACACTTTAAGGAACTGGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
131 TCTTGAACACTTTAAGGAAC-AGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* *
17557 CGTCCAACAACCAAGGGAGAA
195 CGTCCAAGAACCAAGAGAGAA
* * * * *
17578 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAG-GCACAAACTTATTTACAAAATGACAAACTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCA-AAACTTGTTTACAAAATGAAAAACTA
* * *
17642 TTTAGACCAAATGATGCGACTTCCGGA-GCATGCAATGTTCGAAAAATTACTCGAAGGACTGGAT
65 TTTAGACCAAATGATGCGACTTCC-CACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGAT
* * * * ** * * * * *
17706 CGTCTTTAATACTTTATGGAACCGAAGTAATAAATGAACCCGTAAAAGTTTGACGAGTTTGGATG
129 CGTCTTGAACACTTTAAGGAACAGATTTAA-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* *
17771 TTC-TACCAAGAACCAACAGAGAC
193 TTCGT-CCAAGAACCAAGAGAGAA
*
17794 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAGAACTTGTTTACAAAATGAAAAACTAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * ** *
17859 ATCGACCAAATGATGCGATTTCCCACGCATGGCATGTTCAAAAAATTAAACGAAGGAAAGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* * *
17924 TCTTAAACACTTTAAGGAACCATATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
131 TCTTGAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * * *
17989 CGTCGAACAACCAAGGGAGAC
195 CGTCCAAGAACCAAGAGAGAA
* * ** * *
18010 ACAATTGTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* ** * * *
18075 TTAGACCAAATGATGCGACTTCCCAAGCATGTCATGTTCGAAAAATTGCTAGAAGGATTGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
** * ** * * *
18140 TCTTGAATTCTTTAAGGAACCGAAGCTATAAAAGAACTTGTAAAAGTTTGACAAGTTCAGAAGTT
131 TCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
*
18205 CATCCAAGAACCAAGAGAGAA
195 CGTCCAAGAACCAAGAGAGAA
* * *
18226 ACAATTCTCATGTAAATAAGTTTTTAATTCAACGATCAAAACATGTTTACAAAATG-AAAACTAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * * *
18290 TTAGAGCAAACGATGTGATTTCCCTCGCATGGAATGTTTGGAAAATTACTCGAAGGAATGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* * * **
18355 TGTTGAACACTTTAAGCAACCGAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTT
131 TCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
*
18420 CGTCCAACAACCAAGAGAGAA
195 CGTCCAAGAACCAAGAGAGAA
* * * * ** * *
18441 ATAATTCACACGTAAATAAGTTTTTAATTTAGAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * *
18506 TTAGACCAAATGATGCGACTTCCCAAGCA-GGTAATGTTCGAAAAATTGCTC-AGAGGATTGGAT
66 TTAGACCAAATGATGCGACTTCCCACGCATGG-AATGTTCGAAAAATTACTCGA-AGGAATGGAT
* * * * * * *
18569 CGTCTTGAATACTTCAAGGAAACAAAGTTATAAAAGAACTCGTAAAAGTTTGACACGTTCGAAAG
129 CGTCTTGAACACTTTAAGG-AACAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* *
18634 TTCGTCCAAGGACCAAGAGAGAC
193 TTCGTCCAAGAACCAAGAGAGAA
18657 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * * *
18722 TTAGACCAAATGATTCGATTTCACTCGCATTGAATGTTCAAAAAATTATTCGAAGGAATGGATCG
66 TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
* * * *
18787 TCTTAAACACTTTAAGGAACATAATTTAAAAAAGAACTTGTAAAAGATTGACAAGTTCGGAAGTT
131 TCTTGAACACTTTAAGGAACA-GATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
*
18852 CGTCCAACAACCAAGAGAGAA
195 CGTCCAAGAACCAAGAGAGAA
* * * * ** * * * * *
18873 ACAAATGTCACGTAAATAAG-TTTTAGTTGAAAGGCCAAAATTTGTTTACAGAGTGACAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * * * * * *
18937 TTAGACCAAATGATGCGACTTCCCTA-GCATGTAATGTTCGGAGAATTGCTCAAAAGATTGGGAT
66 TTAGACCAAATGATGCGACTTCCC-ACGCATGGAATGTTCGAAAAATTACTCGAAGGAAT-GGAT
* * * * ** *
19001 CGTCTGGAATACTTTAAGCAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
129 CGTCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * * *
19066 TTC-TAACAAGAACAAAGAGACAC
193 TTCGT-CCAAGAACCAAGAGAGAA
* * * * ** *
19089 ACAATTCTCACGTAAATAAGTTTTTTATTCAATGATCAAAACTTGTTTGCAAAATGGAAGGCAAT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* ** * * *
19154 TTAGACCAAATGATGCGATTTTCCTTCGCATGGAATGTTTGGAAAATTACTCGAAGGAATCGATC
66 TTAGACCAAATGATGCGA-CTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * * *
19219 GTCCTGAACACTTTAAGGAACTAGATATAAAAAA-AACTCGTAAATGTTTGACAAGCTCGGAAGT
130 GTCTTGAACACTTTAAGGAAC-AGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
*
19283 TCGTCCAACAACCAAGAGAGAA
194 TCGTCCAAGAACCAAGAGAGAA
* ** * *
19305 ACAATTCTCACGTAAATAAGTTTTTAATTTAAAGGCCAAAACTTGTTTACAAGATGACAAAA-TT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTA
* * * * * ** *
19369 TTTAGACCAAATGAGGCGACTTCCCTA-GCATGTAATGTTTGGAAAATTGCTCGAAACATTGGAT
65 TTTAGACCAAATGATGCGACTTCCC-ACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGAT
* ** * ** * * *
19433 CGTATTGAATGCTTTAAGGAACACAAGCTATAAAAGAACTCGTAAAAGTTCGATAAGTTCGGAAG
129 CGTCTTGAACACTTTAAGGAACA-GATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * *
19498 TTCATCCAAGAACCAAAAGTGAA
193 TTCGTCCAAGAACCAAGAGAGAA
* *
19521 ACAATTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GAAAAACTA
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC-AAAATGAAAAACTA
* * ** *
19585 TTTAGACCAAATGATGTGATTTCCTTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGATC
65 TTTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * *
19650 GTCCTGAACACTTTAAGGAACAAGATTTAAAAAAGAACTAGTAAAAATTTGACAAGTTCGGAAGT
130 GTCTTGAACACTTTAAGGAAC-AGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
19715 TCGTCCAAGAACCAAGAGAGAA
194 TCGTCCAAGAACCAAGAGAGAA
** * * * *
19737 GTAATTCTCACATAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTG-AAATCTA
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAA-TGAAAAACTA
* * * * ** *
19801 TTTAGACTAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACAAGTAGGAATGGATC
65 TTTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATC
* * * * * * * *
19866 TTATTCAAAACTTTAAGGATCCGAATTTAAAAAAGAACTCATAAAAGTTT-ATCAAGTTTGGAAG
130 GTCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAG
* *
19930 TTCGCCCAACAACCAAGAGAGAA
193 TTCGTCCAAGAACCAAGAGAGAA
* * ** * *
19953 ACAATTCTCACATAAATAAGTTTTTAATTCAATGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
* * **
20018 TTAGACCAAATGATGTGACTTCCCGAC-CATGTAATGTTCGAAAAATTGTTCGAAGG-ATGGGAT
66 TTAGACCAAATGATGCGACTTCCC-ACGCATGGAATGTTCGAAAAATTACTCGAAGGAAT-GGAT
* * * * ** * * * *
20081 CGTCCTAAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAA-TTTCTACAAGTTTGAAA
129 CGTCTTGAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAAAGTTT-GACAAGTTCGGAA
*
20145 TTTCGTCCAAGAACCAAGAGAGA
192 GTTCGTCCAAGAACCAAGAGAGA
20168 CACA
Statistics
Matches: 4400, Mismatches: 871, Indels: 194
0.81 0.16 0.04
Matches are distributed among these distances:
201 14 0.00
202 11 0.00
204 3 0.00
205 115 0.03
206 48 0.01
207 2 0.00
208 266 0.06
209 5 0.00
210 3 0.00
211 1 0.00
212 4 0.00
213 3 0.00
214 144 0.03
215 693 0.16
216 2948 0.67
217 109 0.02
218 31 0.01
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (215 bp):
ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
TTAGACCAAATGATGCGACTTCCCACGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCG
TCTTGAACACTTTAAGGAACAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
GTCCAAGAACCAAGAGAGAA
Found at i:15189 original size:432 final size:431
Alignment explanation
Indices: 14584--20167 Score: 7416
Period size: 432 Copynumber: 13.0 Consensus size: 431
14574 TAAAAGTTTG
* * *
14584 ACAATTCTCACGTGAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTC
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * *
14649 TTACACCAAATGATGCGACATCCCAAGCATGTAATGTTCGAAAAATTGTTCGAAGGATTCGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
* * * *
14714 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGATCTCGTAAAAGTTTGATAAGTTCAGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * * *
14779 CATCCAAGAACCAAGAGAGACATAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAACTT
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTT
* * * * * *
14844 CTTTATAAAATGAAAAACAATTTAGACCAAATGATGTGATTTCCCACGCAAGGAATGTTCGAAAA
261 GTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAA
* * *
14909 ATTACACGAAGGAATAGATCATCTTAAACACTTTAAGGTATCAGATTTAAAAAAGAACTCGTAAA
326 ATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGG-AACAGATTTAAAAAAGAACTCGTAAA
*
14974 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGGGAGAA
390 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
* * *
15016 ATAATTGTCACGTAATTAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGAGAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * *
15081 TTAGACCAAATGATGCGACTTCCAAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTAGATTG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
15146 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
*
15211 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACAT
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTT
* * * * *
15276 GTTTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTTCTTTGCATGGAATGTTCAAAAA
261 GTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAA
* * * * * * * *
15341 ATTACACTAAGGAATGGATCGTCTTAAACAGTTGACGGACCCGGATTTAAAAAAGTACTCCTAAA
326 ATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGA-ACAGATTTAAAAAAGAACTCGTAAA
* * *
15406 AGTTTGACAAGTTCGGAAGTT-GTCCAATAGCCAAGAGAAAA
390 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
* *
15447 ATAATTGTCACATAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * ** * *
15512 TTAGACCAAATGATGCCACTTCTCGAGCATGTAATGTTCGGGAAATTGTTTGAAGGATTGGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
* * * * * *
15577 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC-CTGTAAAAGATCGAAAAGTTCAGAAGT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCGGAAGT
* * * * *
15641 TCGTCAAAGAACAAAGAGGGACACAATTCTAACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
195 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
* * *
15706 TGTTTACNAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAACGTTCGAAA
260 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAA
* * * *
15771 AATTACTCGAAGGAATGGATCGTCTTGAACACTTGAAGTAACCAGATTTAAAAAAGAACTCGTAA
325 AATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAA
* *
15836 AAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGGGAGAA
389 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
*
15879 ACAATTGAT-AAGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTT
1 ACAATTG-TCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTT
* * * * *
15943 TTTAGACCAAATGATACGACTTCCCAAGCATGTCATGTTCGGAAAATTGCTCAAAGGATTGGAAC
65 TTTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATC
* * **
16008 GTCTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCAAAAGT
130 GTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * *
16073 TCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATCAAAACA
195 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
* * **
16138 TGTTTACAAAATGAAAAAATATTTAGACCAAATGGTGCGATTTCCCTCGCATGGAATGTTAAAAA
260 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAA
* *
16203 AATTACACGAAGGAAT-G---G------ACACTTTAAGGAATCAGATTTAAAAAAGTACTCCTAA
325 AATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAA
* * *
16258 AAGTTTGACAAGTGT-GGAAGTT-GTCCAACATCCAGGAGACAA
389 AAGTTTGACAAGT-TCGGAAGTTCGTCCAACAACCAAGAGAGAA
* *
16300 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTGTACAAAATGAAAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * * *
16365 TTAGACCAAATGATACAACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGATAG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
* * **
16430 TGTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAATTCAACAAGTTCGGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* *
16495 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAGATAAGTTTTTAATTCGAAGATCAAAA-TA
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT-
* *
16559 TGTTTACAAAATGAAAAACTATTTAGACCAAATGGTGCGATTTCCCTCGCGTGGAATGTTCGAAA
260 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAA
** * *
16624 AATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAATCAGATTTAAAAAAGTTCCCCTAA
325 AATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAA
*
16689 AAGTTTGACAAGTTCGGAAGTT-GTCCAACAACCAAGAGAGAG
389 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
*
16731 ACAATTGTCAC-AAAATAAG--TTT--TT--AAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * * *
16789 TTAGACCAAACGATACAACTTCCCGAGCATGTAATGTTCGAAAAATTGCTCGATGGATTGGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
* * * **
16854 TGTTGAATACTTTAAGGAACCAAAGCTATAAAAGAACTCGTTAAAGTTCAACAAGTTCGGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* *
16919 CGT-------CCAAG-GAGAAACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATCAAAACAT
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTT
* * *
16976 GTTTACAGAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTTGCATGGAATGTTTGAAAA
261 GTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAA
* * * *
17041 ATTACTCAAAGGAATGGATCGTCTTAAACCCTTCAAGGAACCAGATTTAAAAAAGAACTCGTAAA
326 ATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGTAAA
*
17106 AGTTTGACAAGTTCGGAAGTTCATCCAACAACCAAGAGAGAA
390 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
17148 ACAATTGTCACG-AAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAC-TT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* *
17211 TTAGACCAAATGATGCGACTTCCCAAGTATGTAATGTTC-AGAAAATTGCTCGAAGGCTTGGATC
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGA-AAAATTGCTCGAAGGATTGGATC
* ** * *
17275 GTGTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCAACAGGTTCGAAAGT
130 GTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* *
17340 TCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACA
195 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
* *
17405 TGTTTACAAAATGAAAAACAATTTAGACCAAATGATGCGATTTCCCTCACATGGAATGTTCGAAA
260 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAA
*
17470 AATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAACTGGATTTAAAAAAGAACTCGTAA
325 AATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAAC-AGATTTAAAAAAGAACTCGTAA
*
17535 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGGGAGAA
389 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
*
17578 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGG-CACAAACTTATTTACAAAATGACAAACTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCA-AAACTTGTTTACAAAATGACAAACTT
** * * *
17642 TTTAGACCAAATGATGCGACTTCCGGAGCATGCAATGTTCGAAAAATTACTCGAAGGACTGGATC
65 TTTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATC
* * * * * * *
17707 GTCTTTAATACTTTATGGAACCGAAG-TAATAAATGAACCCGTAAAAGTTTGACGAGTTTGGATG
130 GTCTTGAATACTTTAAGGAACCGAAGCT-ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
* * *
17771 TTC-TACCAAGAACCAACAGAGACACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAGAA
194 TTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAA
* * * * *
17835 CTTGTTTACAAAATGAAAAACTATATCGACCAAATGATGCGATTTCCCACGCATGGCATGTTCAA
258 CTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGA
* * *
17900 AAAATTAAACGAAGGAAAGGATCGTCTTAAACACTTTAAGGAACCATATTTAAAAAAGAACTCGT
323 AAAATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAA-CAGATTTAAAAAAGAACTCGT
* * * *
17965 AAAAGTTTGACAAGTTCAGAAGTTCGTCGAACAACCAAGGGAGAC
387 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
*
18010 ACAATTGTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* *
18075 TTAGACCAAATGATGCGACTTCCCAAGCATGTCATGTTCGAAAAATTGCTAGAAGGATTGGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
* * *
18140 TCTTGAATTCTTTAAGGAACCGAAGCTATAAAAGAACTTGTAAAAGTTTGACAAGTTCAGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
* * * *
18205 CATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAACGATCAAAACAT
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTT
* * * * *
18270 GTTTACAAAATG-AAAACTATTTAGAGCAAACGATGTGATTTCCCTCGCATGGAATGTTTGGAAA
261 GTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAA
* * * * *
18334 ATTACTCGAAGGAATGGATCGTGTTGAACACTTTAAGCAACCGAATTTAAAAAAGAACTCGTAAA
326 ATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCGTAAA
**
18399 AGTTTGACAAGTTCAAAAGTTCGTCCAACAACCAAGAGAGAA
390 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
* ** * *
18441 ATAATTCACACGTAAATAAGTTTTTAATTTAGAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
*
18506 TTAGACCAAATGATGCGACTTCCCAAGCAGGTAATGTTCGAAAAATTGCTC-AGAGGATTGGATC
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGA-AGGATTGGATC
* * * * * *
18570 GTCTTGAATACTTCAAGGAAACAAAGTTATAAAAGAACTCGTAAAAGTTTGACACGTTCGAAAGT
130 GTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* *
18635 TCGTCCAAGGACCAAGAGAGACACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
195 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
* * * *
18700 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATTCGATTTCACTCGCATTGAATGTTCAAAA
260 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAA
** * *
18765 AATTATTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACATAATTTAAAAAAGAACTTGTAA
325 AATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAACA-GATTTAAAAAAGAACTCGTAA
*
18830 AAGATTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
389 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
* * * * * *
18873 ACAAATGTCACGTAAATAAG-TTTTAGTTGAAAGGCCAAAATTTGTTTACAGAGTGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * * *
18937 TTAGACCAAATGATGCGACTTCCCTAGCATGTAATGTTCGGAGAATTGCTCAAAAGATTGGGATC
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATT-GGATC
* *
19002 GTCTGGAATACTTTAAGCAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
130 GTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * * * *
19067 TC-TAACAAGAACAAAGAGACACACAATTCTCACGTAAATAAGTTTTTTATTCAATGATCAAAAC
195 TCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAAC
* * ** * * * *
19131 TTGTTTGCAAAATGGAAGGCAATTTAGACCAAATGATGCGATTTTCCTTCGCATGGAATGTTTGG
259 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGA-TTTCCCTCGCATGGAATGTTCGA
* * * * *
19196 AAAATTACTCGAAGGAATCGATCGTCCTGAACACTTTAAGGAACTAGATATAAAAAA-AACTCGT
323 AAAATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAAC-AGATTTAAAAAAGAACTCGT
* *
19260 AAATGTTTGACAAGCTCGGAAGTTCGTCCAACAACCAAGAGAGAA
387 AAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
* * * *
19305 ACAATTCTCACGTAAATAAGTTTTTAATTTAAAGGCCAAAACTTGTTTACAAGATGACAAAATTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * * **
19370 TTAGACCAAATGAGGCGACTTCCCTAGCATGTAATGTTTGGAAAATTGCTCGAAACATTGGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
* * * *
19435 TATTGAATGCTTTAAGGAACAC-AAGCTATAAAAGAACTCGTAAAAGTTCGATAAGTTCGGAAGT
131 TCTTGAATACTTTAAGGAAC-CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGT
* * * * *
19499 TCATCCAAGAACCAAAAGTGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACA
195 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
* *
19564 TGTTTACGAAAA-GAAAAACTATTTAGACCAAATGATGTGATTTCCTTCGCATGGAATGTTCGAA
260 TGTTTAC-AAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAA
* * * * *
19628 AAATTACTCGAAGGAATAGATCGTCCTGAACACTTTAAGGAACAAGATTTAAAAAAGAACTAGTA
324 AAATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAAC-AGATTTAAAAAAGAACTCGTA
* *
19693 AAAATTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
388 AAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
** * * * ** * * *
19737 GTAATTCTCACATAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTGA-AATCTA
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAA-TGACAAACTT
* * * ** * * ** * *
19801 TTTAGACTAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACAAGTAGGAATGGATC
65 TTTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATC
* * * * * ** * * *
19866 TTATTCAAAACTTTAAGGATCCGAATTTAAAAAAGAACTCATAAAAGTTT-ATCAAGTTTGGAAG
130 GTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAG
* * * * **
19930 TTCGCCCAACAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAATGGCCAAAAC
194 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAAC
* * * * * *
19995 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGTGACTTCCCGAC-CATGTAATGTTCGA
259 TTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCC-TCGCATGGAATGTTCGA
*** * * * ** *
20059 AAAATTGTTCGAAGG-ATGGGATCGTCCTAAATACTTTAAGGAACCGAAGCTATAAAAGAACTCG
323 AAAATTACACGAAGGAAT-GGATCGTCTTAAACACTTTAAGGAACAG-ATTTAAAAAAGAACTCG
* * * * *
20123 TAAAA-TTTCTACAAGTTTGAAATTTCGTCCAAGAACCAAGAGAGA
386 TAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGA
20168 CACA
Statistics
Matches: 4565, Mismatches: 516, Indels: 142
0.87 0.10 0.03
Matches are distributed among these distances:
416 183 0.04
417 41 0.01
419 3 0.00
420 1 0.00
421 333 0.07
422 174 0.04
423 32 0.01
424 158 0.03
425 1 0.00
426 2 0.00
428 4 0.00
429 6 0.00
430 230 0.05
431 1070 0.23
432 2151 0.47
433 175 0.04
434 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (431 bp):
ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCG
TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTT
GTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAA
ATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAACAGATTTAAAAAAGAACTCGTAAAA
GTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAA
Found at i:18455 original size:863 final size:863
Alignment explanation
Indices: 14584--20167 Score: 7419
Period size: 863 Copynumber: 6.5 Consensus size: 863
14574 TAAAAGTTTG
* * *
14584 ACAATTCTCACGTGAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTC
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * * *
14649 TTACACCAAATGATGCGACATCCCAAGCATGTAATGTTCGAAAAATTGTTCGAAGGATTCGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTAGAAGGATTGGATCG
* * *
14714 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGATCTCGTAAAAGTTTGATAAGTTCAGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * *
14779 CATCCAAGAACCAAGAGAGACATAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAACTT
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAACTT
* * * * * *
14844 CTTTATAAAATGAAAAACAATTTAGACCAAATGATGTGATTTCCCACGCAAGGAATGTTCGAAAA
261 GTTTACAAAATG-AAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAA
* * * * *
14909 ATTACACGAAGGAATAGATCATCTTAAACACTTTAAGGTATCAGATTTAAAAAAGAACTCGTAAA
325 ATTACTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAA
* * *
14974 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGGGAGAAATAATTGTCACGTAATTAAGTTT
390 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTGTCACGTAAATAAGTTT
*
15039 TTAATTCAAAGGCCAAAACTTGTTTACAAAATGAGAAACTTTTTAGACCAAATGATGCGACTTCC
455 TTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCC
* * * *
15104 AAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTAGATTGTCTTGAATACTTTAAGGAACCGA
520 CAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCAA
*
15169 AGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
585 AGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
15234 AATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTT
650 AATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTT
* * * * * *
15299 AGACCAAACGATGCGATTTTCTTTGCATGGAATGTTCAAAAAATTACACTAAGGAATGGATCGTC
715 AGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCAAAAAATTACACGAAGGAAAGGATCGTC
* * * * * * *
15364 TTAAACAGTTGACGGACCCGGATTTAAAAAAGTACTCCTAAAAGTTTGACAAGTTCGGAAGTT-G
780 TTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * *
15428 TCCAATAGCCAAGAGAAAA
845 TCCAACAACCAAGAGAGAA
* *
15447 ATAATTGTCACATAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * ** * *
15512 TTAGACCAAATGATGCCACTTCTCGAGCATGTAATGTTCGGGAAATTGTTTGAAGGATTGGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTAGAAGGATTGGATCG
* * * * *
15577 TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC-CTGTAAAAGATCGAAAAGTTCAGAAGT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCAGAAGT
* * * * * *
15641 TCGTCAAAGAACAAAGAGGGACACAATTCTAACGTAAATAAGTTTTTAATTCAAAGATCAAAACT
195 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAACT
* * *
15706 TGTTTACNAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAACGTTCGAAA
260 TGTTTACAAAAT-GAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAA
* * *
15771 AATTACTCGAAGGAATGGATCGTCTTGAACACTTGAAGTAACCAGATTTAAAAAAGAACTCGTAA
324 AATTACTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAA
* * *
15836 AAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGGGAGAAACAATTGAT-AAGTAAATAAGT
389 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTG-TCACGTAAATAAGT
*
15900 TTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATACGACTT
453 TTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTT
* * * *
15965 CCCAAGCATGTCATGTTCGGAAAATTGCTCAAAGGATTGGAACGTCTTGAATACTTTAAGGAACC
518 CCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
** * *
16030 AAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAA
583 AAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
* *
16095 ACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAAATAT
648 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTAT
* *
16160 TTAGACCAAATGGTGCGATTTCCCTCGCATGGAATGTTAAAAAAATTACACGAAGG--A--AT-G
713 TTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCAAAAAATTACACGAAGGAAAGGATCG
* * * *
16220 -----GACACTTTAAGGAATCAGATTTAAAAAAGTACTCCTAAAAGTTTGACAAGTGT-GGAAGT
778 TCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGT-TCGGAAGT
* * *
16279 T-GTCCAACATCCAGGAGACAA
842 TCGTCCAACAACCAAGAGAGAA
* *
16300 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTGTACAAAATGAAAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * * * *
16365 TTAGACCAAATGATACAACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGATAG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTAGAAGGATTGGATCG
* * ** *
16430 TGTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAATTCAACAAGTTCGGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
*
16495 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAGATAAGTTTTTAATTCGAA-GATCAAAA-T
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC-AATGATCAAAACT
* *
16558 ATGTTTACAAAATGAAAAACTATTTAGACCAAATGGTGCGATTTCCCTCGCGTGGAATGTTCGAA
260 -TGTTTACAAAATG-AAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAA
* * ** * *
16623 AAATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAATCAGATTTAAAAAAGTTCCCCTA
323 AAATTACTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTA
* *
16688 AAAGTTTGACAAGTTCGGAAGTT-GTCCAACAACCAAGAGAGAGACAATTGTCAC-AAAATAAG-
388 AAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTGTCACGTAAATAAGT
* * *
16750 -TTT--TT--AAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAACGATACAACTT
453 TTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTT
* * *
16810 CCCGAGCATGTAATGTTCGAAAAATTGCTCGATGGATTGGATCGTGTTGAATACTTTAAGGAACC
518 CCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACC
* *
16875 AAAGCTATAAAAGAACTCGTTAAAGTTCAACAAGTTCGGAAGTTCGT-------CCAAG-GAGAA
583 AAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
* *
16932 ACAATTCTCACGTAGATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAGAATGAAAAACTAT
648 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTAT
* ** * * *
16997 TTAGACCAAATGATGCGATTTCCCTTGCATGGAATGTTTGAAAAATTACTCAAAGGAATGGATCG
713 TTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCAAAAAATTACACGAAGGAAAGGATCG
* *
17062 TCTTAAACCCTTCAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
778 TCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
*
17127 CATCCAACAACCAAGAGAGAA
843 CGTCCAACAACCAAGAGAGAA
17148 ACAATTGTCACG-AAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAAC-TT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * *
17211 TTAGACCAAATGATGCGACTTCCCAAGTATGTAATGTTC-AGAAAATTGCTCGAAGGCTTGGATC
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGA-AAAATTGCTAGAAGGATTGGATC
* ** *
17275 GTGTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCAACAGGTTC-GAAAG
130 GTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAG
* *
17339 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAAC
194 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAAC
* * *
17404 ATGTTTACAAAATGAAAAACAATTTAGACCAAATGATGCGATTTCCCTCACATGGAATGTTCGAA
259 TTGTTTACAAAATG-AAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAA
* **
17469 AAATTACACGAAGGAATGGATCGTCTTAAACACTTTAAGGAACTGGATTTAAAAAAGAACTCGTA
323 AAATTACTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTA
*
17534 AAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGGGAGAAACAATTGTCACGTAAATAAGT
388 AAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTGTCACGTAAATAAGT
*
17599 TTTTAATTCAAAGG-CACAAACTTATTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
453 TTTTAATTCAAAGGCCA-AAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACT
** * * * * *
17663 TCCGGAGCATGCAATGTTCGAAAAATTACTCGAAGGACTGGATCGTCTTTAATACTTTATGGAAC
517 TCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
* * * * * * * *
17728 CGAAG-TAATAAATGAACCCGTAAAAGTTTGACGAGTTTGGATGTTC-TACCAAGAACCAACAGA
582 CAAAGCT-ATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGA
* * *
17791 GACACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAGAACTTGTTTACAAAATGAAAAAC
645 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAAC
* * * * *
17856 TATATCGACCAAATGATGCGATTTCCCACGCATGGCATGTTCAAAAAATTAAACGAAGGAAAGGA
710 TATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCAAAAAATTACACGAAGGAAAGGA
* *
17921 TCGTCTTAAACACTTTAAGGAACCATATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAA
775 TCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * *
17986 GTTCGTCGAACAACCAAGGGAGAC
840 GTTCGTCCAACAACCAAGAGAGAA
*
18010 ACAATTGTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
*
18075 TTAGACCAAATGATGCGACTTCCCAAGCATGTCATGTTCGAAAAATTGCTAGAAGGATTGGATCG
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTAGAAGGATTGGATCG
* *
18140 TCTTGAATTCTTTAAGGAACCGAAGCTATAAAAGAACTTGTAAAAGTTTGACAAGTTCAGAAGTT
131 TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
* * * *
18205 CATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAACGATCAAAACAT
196 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAACTT
* * * * *
18270 GTTTACAAAATGAAAACTATTTAGAGCAAACGATGTGATTTCCCTCGCATGGAATGTTTGGAAAA
261 GTTTACAAAATGAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAA
* * *
18335 TTACTCGAAGGAATGGATCGTGTTGAACACTTTAAGCAACC-GAATTTAAAAAAGAACTCGTAAA
326 TTACTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAG-ATTTAAAAAAGAACTCGTAAA
** * **
18399 AGTTTGACAAGTTCAAAAGTTCGTCCAACAACCAAGAGAGAAATAATTCACACGTAAATAAGTTT
390 AGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTGTCACGTAAATAAGTTT
* *
18464 TTAATTTAGAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCC
455 TTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCC
* * *
18529 CAAGCAGGTAATGTTCGAAAAATTGCTC-AGAGGATTGGATCGTCTTGAATACTTCAAGGAAACA
520 CAAGCATGTAATGTTCGAAAAATTGCTCGA-AGGATTGGATCGTCTTGAATACTTTAAGGAACCA
* * * * * *
18593 AAGTTATAAAAGAACTCGTAAAAGTTTGACACGTTCGAAAGTTCGTCCAAGGACCAAGAGAGACA
584 AAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
*
18658 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATT
649 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATT
* * * ** *
18723 TAGACCAAATGATTCGATTTCACTCGCATTGAATGTTCAAAAAATTATTCGAAGGAATGGATCGT
714 TAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCAAAAAATTACACGAAGGAAAGGATCGT
* * *
18788 CTTAAACACTTTAAGGAA-CATAATTTAAAAAAGAACTTGTAAAAGATTGACAAGTTCGGAAGTT
779 CTTAAACACTTTAAGGAACCA-GATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTT
18852 CGTCCAACAACCAAGAGAGAA
843 CGTCCAACAACCAAGAGAGAA
* * * * * *
18873 ACAAATGTCACGTAAATAAG-TTTTAGTTGAAAGGCCAAAATTTGTTTACAGAGTGACAAACTTT
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
* * * *
18937 TTAGACCAAATGATGCGACTTCCCTAGCATGTAATGTTCGGAGAATTGCTCA-AAAGATTGGGAT
66 TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCT-AGAAGGATT-GGAT
* * *
19001 CGTCTGGAATACTTTAAGCAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
129 CGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG
* * * * *
19066 TTC-TAACAAGAACAAAGAGACACACAATTCTCACGTAAATAAGTTTTTTATTCAATGATCAAAA
194 TTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAA
* ** * * *
19130 CTTGTTTGCAAAATGGAAGGCAATTTAGACCAAATGATGCGATTTTCCTTCGCATGGAATGTTTG
258 CTTGTTTACAAAAT-GAAAACTATTTAGACCAAATGATGCGA-TTTCCCTCGCATGGAATGTTCG
* * * * * *
19195 GAAAATTACTCGAAGGAATCGATCGTCCTGAACACTTTAAGGAACTAGATATAAAAAA-AACTCG
321 AAAAATTACTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCG
* * *
19259 TAAATGTTTGACAAGCTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAA
386 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTGTCACGTAAATAA
* * * *
19324 GTTTTTAATTTAAAGGCCAAAACTTGTTTACAAGATGACAAAATTTTTAGACCAAATGAGGCGAC
451 GTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGAC
* * * ** * *
19389 TTCCCTAGCATGTAATGTTTGGAAAATTGCTCGAAACATTGGATCGTATTGAATGCTTTAAGGAA
516 TTCCCAAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAA
* * * *
19454 -CACAAGCTATAAAAGAACTCGTAAAAGTTCGATAAGTTCGGAAGTTCATCCAAGAACCAAAAGT
581 CCA-AAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
19518 GAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GAAAAA
645 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTAC-AAAATGAAAAA
* * * *
19582 CTATTTAGACCAAATGATGTGATTTCCTTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATA-
709 CTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCAAAAAATTACACGAAGGAA-AG
* * * * *
19646 GATCGTCCTGAACACTTTAAGGAACAAGATTTAAAAAAGAACTAGTAAAAATTTGACAAGTTCGG
773 GATCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
*
19711 AAGTTCGTCCAAGAACCAAGAGAGAA
838 AAGTTCGTCCAACAACCAAGAGAGAA
** * * * ** * * *
19737 GTAATTCTCACATAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTGA-AATCTA
1 ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAA-TGACAAACTT
* * * ** * * * * *
19801 TTTAGACTAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATTACAAGTAGGAATGGATC
65 TTTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTAGAAGGATTGGATC
* * * * * ** * * **
19866 TTATTCAAAACTTTAAGGATCCGAATTTAAAAAAGAACTCATAAAAGTTT-ATCAAGTTTGGAAG
130 GTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCAGAAG
* * * **
19930 TTCGCCCAACAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAATGGCCAAAAC
194 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAAC
* * * * *
19995 TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGTGACTTCCCGAC-CATGTAATGTTCGA
259 TTGTTTACAAAATGA-AAACTATTTAGACCAAATGATGCGATTTCCC-TCGCATGGAATGTTCGA
** * * ** *
20059 AAAATTGTTCGAAGG-ATGGGATCGTCCTAAATACTTTAAGGAACC-GAAGCTATAAAAGAACTC
322 AAAATTACTCGAAGGAAT-GGATCGTCTTAAACACTTTAAGGAACCAG-ATTTAAAAAAGAACTC
* * * * *
20122 GTAAAA-TTTCTACAAGTTTGAAATTTCGTCCAAGAACCAAGAGAGA
385 GTAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGA
20168 CACA
Statistics
Matches: 4175, Mismatches: 470, Indels: 151
0.87 0.10 0.03
Matches are distributed among these distances:
837 118 0.03
838 5 0.00
841 2 0.00
842 1 0.00
845 156 0.04
846 319 0.08
847 130 0.03
848 35 0.01
849 3 0.00
850 3 0.00
851 8 0.00
852 29 0.01
853 434 0.10
854 143 0.03
858 1 0.00
859 2 0.00
861 4 0.00
862 308 0.07
863 1476 0.35
864 841 0.20
865 153 0.04
866 4 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (863 bp):
ACAATTGTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTT
TTAGACCAAATGATGCGACTTCCCAAGCATGTAATGTTCGAAAAATTGCTAGAAGGATTGGATCG
TCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTT
CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGATCAAAACTT
GTTTACAAAATGAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAA
TTACTCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAAA
GTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTGTCACGTAAATAAGTTTT
TAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGACTTCCC
AAGCATGTAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCAAA
GCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
ATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTA
GACCAAATGATGCGATTTCCCTCGCATGGAATGTTCAAAAAATTACACGAAGGAAAGGATCGTCT
TAAACACTTTAAGGAACCAGATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT
CCAACAACCAAGAGAGAA
Done.