genome.fa.s12006.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012006.1 Kokia drynarioides strain JFW-HI SEQ_127004, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139472

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091--1594	29	17.2	28	76	14	416	36	30	2	30	1.70
1095--1594	59	8.5	59	87	4	627	37	30	2	30	1.70
7126--7181	24	2.4	25	85	8	73	53	5	5	35	1.47
9097--9149	20	2.7	20	81	0	61	37	5	3	52	1.43
12625--12699	37	2.0	37	100	0	150	22	26	5	45	1.74
16838--16907	21	3.2	20	78	6	59	10	5	17	67	1.39
16847--16918	22	3.3	22	82	9	94	11	4	15	69	1.32
16903--16945	21	2.0	21	86	0	59	9	4	18	67	1.36
16945--17010	12	5.8	12	65	13	50	6	4	19	69	1.27
16945--17010	21	3.0	21	80	8	78	6	4	19	69	1.27
28338--28372	13	2.8	12	91	8	52	54	0	2	42	1.15
28338--28372	12	2.8	13	86	8	54	54	0	2	42	1.15
40419--40444	3	8.7	3	100	0	52	65	0	34	0	0.93
40444--40506	33	2.0	32	85	11	87	34	1	12	50	1.50
41813--41930	28	4.2	29	75	8	84	19	13	24	42	1.87
43194--43238	23	2.0	23	95	0	81	42	4	22	31	1.73
44005--44065	30	2.0	30	90	0	95	21	40	0	37	1.53
44754--44802	22	2.3	20	82	6	62	6	6	18	69	1.31
44830--44864	13	2.8	13	86	4	54	5	8	20	65	1.40
44819--44864	12	3.8	12	82	5	56	4	8	19	67	1.35
44860--44901	22	1.9	22	85	0	57	11	7	16	64	1.48
44851--44935	43	2.0	43	81	11	102	10	4	18	65	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45047--45131	39	2.2	38	81	10	100	27	0	7	65	1.18
50357--50403	16	2.9	16	72	15	51	68	4	0	27	1.08
55431--55471	4	10.2	4	89	0	64	21	2	24	51	1.60
57667--57709	21	2.0	22	86	4	61	55	0	9	34	1.32
82320--82645	59	5.5	59	82	5	329	31	3	28	36	1.75
82357--82644	29	9.8	29	71	16	173	32	3	28	35	1.73
82395--82501	30	3.6	28	74	13	90	33	1	27	37	1.68
84441--84511	6	12.2	6	71	15	51	52	2	0	45	1.15
84448--84511	17	3.8	17	85	0	92	53	3	0	43	1.16
92645--92669	2	12.5	2	100	0	50	48	0	0	52	1.00
95261--95312	24	2.2	24	89	0	77	32	11	21	34	1.89
97277--97308	16	1.9	17	93	6	57	46	6	0	46	1.27
100680--100736	24	2.4	24	93	0	96	26	36	21	15	1.93
101710--101994	29	9.9	30	75	15	187	30	2	32	34	1.72
101835--101994	59	2.7	58	89	1	230	30	2	32	35	1.71
102528--102566	14	2.8	14	100	0	78	38	38	0	23	1.55
103086--103173	3	28.0	3	78	11	79	34	2	6	56	1.38
103947--104017	17	4.1	17	83	1	79	50	1	1	46	1.18
104445--104524	35	2.4	33	79	10	90	17	10	7	65	1.46
104635--104699	30	2.2	30	83	5	78	36	18	9	35	1.83
104693--104892	30	6.7	29	67	16	79	35	22	6	36	1.80
104703--104839	30	4.6	30	76	4	98	35	23	4	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109829--109874	2	23.0	2	100	0	92	50	0	0	50	1.00
111686--112021	29	11.4	29	71	15	165	36	3	26	33	1.74
111756--112021	59	4.6	58	80	11	251	36	3	25	34	1.74
111786--112036	29	8.6	29	79	10	219	35	3	27	33	1.75
111741--112035	29	10.1	27	74	13	182	35	4	27	32	1.76
115636--115696	27	2.3	27	97	0	113	22	22	4	49	1.69
120257--120438	96	1.9	96	84	4	242	36	12	19	31	1.89
121798--121837	18	2.2	19	86	13	57	20	5	12	62	1.48
136100--136124	7	3.6	7	100	0	50	32	16	12	40	1.84
138989--139023	18	1.9	18	88	0	52	57	2	0	40	1.14

Tables:   1

The End!