Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001201.1 Kokia drynarioides strain JFW-HI SEQ_112548, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 749

Length: 1249
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41


Found at i:100 original size:16 final size:18

Alignment explanation


    Indices: 71--107  Score: 51
    Period size: 17  Copynumber: 2.2  Consensus size: 18

         61 AATGTAAATT

                     *        
         71 AATTATTATTAATT-TAA
          1 AATTATTATAAATTATAA

                              
         88 AATT-TTATAAATTATAA
          1 AATTATTATAAATTATAA

               
        105 AAT
          1 AAT

        108 ACTTAAATTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  16    8  0.44
  17   10  0.56

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (18 bp):   
AATTATTATAAATTATAA
Done.