Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012013.1 Kokia drynarioides strain JFW-HI SEQ_127011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7292
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:2857 original size:22 final size:21

Alignment explanation


    Indices: 2818--2863  Score: 58
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       2808 TCTCTTCTTC

                 *               
       2818 TTTATTTTATTTTATCTT-AA
          1 TTTATATTATTTTATCTTCAA

                                   
       2838 TTTATATTATATTTATTCTTCAA
          1 TTTATATTAT-TTTA-TCTTCAA

               
       2861 TTT
          1 TTT

       2864 TTTGAAGCGC


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  20    9  0.41
  21    4  0.18
  22    4  0.18
  23    5  0.23

ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67


Consensus pattern (21 bp):   
TTTATATTATTTTATCTTCAA

Found at i:6221 original size:22 final size:21

Alignment explanation


    Indices: 6182--6227  Score: 58
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       6172 TCTCTTCTTC

                 *               
       6182 TTTATTTTATTTTATCTT-AA
          1 TTTATATTATTTTATCTTCAA

                                   
       6202 TTTATATTATATTTATTCTTCAA
          1 TTTATATTAT-TTTA-TCTTCAA

               
       6225 TTT
          1 TTT

       6228 TTTGAAGCGC


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  20    9  0.41
  21    4  0.18
  22    4  0.18
  23    5  0.23

ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67


Consensus pattern (21 bp):   
TTTATATTATTTTATCTTCAA
Done.