genome.fa.s12015.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012015.1 Kokia drynarioides strain JFW-HI SEQ_127013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144775

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1781--1833	25	2.2	23	83	12	63	32	7	20	39	1.81
9213--9427	108	2.0	108	96	0	394	26	15	10	46	1.79
19508--19549	19	2.3	18	88	8	59	76	0	23	0	0.79
20960--21116	79	2.0	79	97	2	298	47	10	15	25	1.78
25115--25157	22	1.9	23	85	4	61	48	2	2	46	1.27
34546--34771	109	2.1	108	87	4	321	44	15	11	28	1.81
36699--36813	58	1.9	59	92	5	196	13	20	17	48	1.80
36902--37775	47	18.9	47	78	8	679	25	13	25	36	1.92
36906--37784	184	4.7	186	77	7	774	24	13	24	36	1.92
37581--38096	40	12.2	40	79	7	365	24	15	25	35	1.94
37763--38092	82	4.0	82	84	2	412	24	15	24	35	1.94
38102--38316	98	2.2	99	81	10	244	25	18	18	37	1.93
43071--43284	109	2.0	108	90	4	342	39	14	13	32	1.85
43768--43824	29	1.9	29	82	10	71	57	0	22	19	1.40
43767--43835	29	2.3	29	78	7	68	57	0	18	23	1.40
55606--55642	18	2.1	18	89	0	56	24	27	0	48	1.51
55941--55974	17	1.9	18	88	5	52	35	23	0	41	1.55
64318--64354	18	2.0	19	89	5	58	70	5	8	16	1.30
75125--75209	42	2.0	42	97	0	161	42	16	23	17	1.89
86801--86842	17	2.5	17	84	11	59	38	0	0	61	0.96
88146--88194	24	2.0	26	88	8	75	65	6	4	24	1.33
90262--90297	2	19.0	2	88	11	58	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97236--97282	24	2.0	23	83	4	58	55	8	10	25	1.62
97164--97420	128	2.0	128	100	0	514	48	9	13	29	1.73
97364--97410	24	2.0	23	83	4	58	55	8	10	25	1.62
98265--98324	31	1.9	31	100	0	120	25	16	20	38	1.93
117205--117363	80	2.0	78	86	2	219	38	18	13	28	1.89
119090--119136	13	3.5	13	82	8	51	17	0	6	76	0.98
119082--119121	13	3.1	13	82	10	55	12	2	2	82	0.87
132062--132105	22	2.0	22	82	8	54	40	2	2	54	1.25
132100--132148	25	1.9	25	87	4	71	55	0	0	44	0.99
132095--132150	25	2.3	24	82	11	69	53	0	0	46	1.00
136216--136264	25	2.1	24	81	11	57	28	0	6	65	1.16
144328--144373	22	2.2	21	85	11	60	26	0	6	67	1.15
144743--144775	2	16.5	2	87	12	50	45	0	3	51	1.16

Tables:   1

The End!