Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012016.1 Kokia drynarioides strain JFW-HI SEQ_127014, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2692
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33


Found at i:110 original size:2 final size:2

Alignment explanation


    Indices: 103--132  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

         93 ATGCAAACTA

                                              *         
        103 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        133 TATTTAACTA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (2 bp):   
AT

Done.