Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012022.1 Kokia drynarioides strain JFW-HI SEQ_127020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86245
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Warning! 273 characters in sequence are not A, C, G, or T
Found at i:243 original size:30 final size:29
Alignment explanation
Indices: 209--288 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 29
199 ATAAATTAAT
* *
209 ATTTTTTATATTTTTATGA-TTTTTAATGAA
1 ATTTTTTAT-TTTTTATAAGTTTTT-ATAAA
*
239 ATTTTATTATTTTTTATAAGTTTTTTTAAA
1 ATTTT-TTATTTTTTATAAGTTTTTATAAA
269 ATTTTTATATGTTTTTATAA
1 ATTTTT-TAT-TTTTTATAA
289 AATTATATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
29 1 0.02
30 24 0.56
31 18 0.42
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (29 bp):
ATTTTTTATTTTTTATAAGTTTTTATAAA
Found at i:273 original size:21 final size:21
Alignment explanation
Indices: 249--292 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
239 ATTTTATTAT
*
249 TTTTTATAAGTTTTTTTAAAA
1 TTTTTATAAGTTTTTATAAAA
*
270 TTTTTATATGTTTTTATAAAA
1 TTTTTATAAGTTTTTATAAAA
291 TT
1 TT
293 ATATATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (21 bp):
TTTTTATAAGTTTTTATAAAA
Found at i:423 original size:32 final size:32
Alignment explanation
Indices: 356--419 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 32
346 TATTAATTTG
* *
356 ATAACTTTTATAATTTAATTTTTATTAAATAA
1 ATAACTTTTATAATTTAATTTATATCAAATAA
*
388 ATAACTTTTA-AATATT-ATTTATGTCAAATAA
1 ATAACTTTTATAAT-TTAATTTATATCAAATAA
419 A
1 A
420 ATAATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (32 bp):
ATAACTTTTATAATTTAATTTATATCAAATAA
Found at i:558 original size:24 final size:26
Alignment explanation
Indices: 526--575 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
516 CAAGTGACAA
526 AAAACTCT-C-TAGTGCCGCCACTTT
1 AAAACTCTCCATAGTGCCGCCACTTT
*
550 AAAATTCTCCTATAGTGCCGCCACTT
1 AAAACTCTCC-ATAGTGCCGCCACTT
576 GATACTCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 1 0.05
27 14 0.64
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (26 bp):
AAAACTCTCCATAGTGCCGCCACTTT
Found at i:3982 original size:32 final size:32
Alignment explanation
Indices: 3946--4042 Score: 78
Period size: 32 Copynumber: 3.2 Consensus size: 32
3936 AAGAATAAAT
3946 CATCAAACCAAGAATTCGAATCCAAAATCGAA
1 CATCAAACCAAGAATTCGAATCCAAAATCGAA
** * * * ** *
3978 CATC-ATGC--TACTAC-AATAAAAAAT-AAA
1 CATCAAACCAAGAATTCGAATCCAAAATCGAA
4005 TCATCAAACCAAGAATTCGAATCCAAAATCGAA
1 -CATCAAACCAAGAATTCGAATCCAAAATCGAA
4038 CATCA
1 CATCA
4043 TGCTACTACA
Statistics
Matches: 43, Mismatches: 16, Indels: 12
0.61 0.23 0.17
Matches are distributed among these distances:
27 2 0.05
28 12 0.28
29 5 0.12
31 5 0.12
32 17 0.40
33 2 0.05
ACGTcount: A:0.51, C:0.24, G:0.07, T:0.19
Consensus pattern (32 bp):
CATCAAACCAAGAATTCGAATCCAAAATCGAA
Found at i:4032 original size:60 final size:60
Alignment explanation
Indices: 3934--4060 Score: 245
Period size: 60 Copynumber: 2.1 Consensus size: 60
3924 ATATCGAAAT
*
3934 TAAAGAATAAATCATCAAACCAAGAATTCGAATCCAAAATCGAACATCATGCTACTACAA
1 TAAAAAATAAATCATCAAACCAAGAATTCGAATCCAAAATCGAACATCATGCTACTACAA
3994 TAAAAAATAAATCATCAAACCAAGAATTCGAATCCAAAATCGAACATCATGCTACTACAA
1 TAAAAAATAAATCATCAAACCAAGAATTCGAATCCAAAATCGAACATCATGCTACTACAA
4054 TAAAAAA
1 TAAAAAA
4061 CATTCAACAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 66 1.00
ACGTcount: A:0.53, C:0.20, G:0.07, T:0.20
Consensus pattern (60 bp):
TAAAAAATAAATCATCAAACCAAGAATTCGAATCCAAAATCGAACATCATGCTACTACAA
Found at i:7633 original size:4 final size:4
Alignment explanation
Indices: 7626--7691 Score: 71
Period size: 4 Copynumber: 16.2 Consensus size: 4
7616 AAATAAATGG
* * *
7626 GAAA GAAA GAAA GAAAA GAAA GAAA GAAA GGAA GAAG GAGAG GAAA GAAA
1 GAAA GAAA GAAA G-AAA GAAA GAAA GAAA GAAA GAAA GA-AA GAAA GAAA
*
7676 G-AA GAAG GAAA GAAA G
1 GAAA GAAA GAAA GAAA G
7692 GTAATGTGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
3 3 0.06
4 42 0.79
5 8 0.15
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:7654 original size:25 final size:25
Alignment explanation
Indices: 7626--7690 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
7616 AAATAAATGG
7626 GAAAGAAAGAAAGAAAAGAAAGAAA
1 GAAAGAAAGAAAGAAAAGAAAGAAA
* * * *
7651 GAAAGGAAGAAGGAGAGGAAAGAAA
1 GAAAGAAAGAAAGAAAAGAAAGAAA
*
7676 G-AAGAAGGAAAGAAA
1 GAAAGAAAGAAAGAAA
7691 GGTAATGTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (25 bp):
GAAAGAAAGAAAGAAAAGAAAGAAA
Found at i:11143 original size:21 final size:21
Alignment explanation
Indices: 11121--11159 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
11111 GTCCATTTGC
*
11121 CCCG-GAGGAGTAGAGTATTG
1 CCCGAGAGGAATAGAGTATTG
11141 CCCGAGAGGAATAGAGTAT
1 CCCGAGAGGAATAGAGTAT
11160 CGCGATGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.31, C:0.15, G:0.36, T:0.18
Consensus pattern (21 bp):
CCCGAGAGGAATAGAGTATTG
Found at i:11286 original size:45 final size:45
Alignment explanation
Indices: 11154--11290 Score: 166
Period size: 45 Copynumber: 3.0 Consensus size: 45
11144 GAGAGGAATA
* * * * * * **
11154 GAGTATCGCGATGGCTTGTTAAACTCAGCCTGATATCCTTCCCTT
1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
* * * *
11199 AAGTATTGCGGTGGCTCGTCAAATTGAGGTTGATATCATTGGCTT
1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
11244 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
11289 GA
1 GA
11291 TGAGCTATGC
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 76 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (45 bp):
GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
Found at i:13549 original size:12 final size:13
Alignment explanation
Indices: 13517--13552 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
13507 TCTTCTTCCT
*
13517 TCTTCTTTCTTTC
1 TCTTTTTTCTTTC
13530 TCTTTTTTCTTTC
1 TCTTTTTTCTTTC
13543 T-TTTTTTCTT
1 TCTTTTTTCTT
13553 CAATTTTCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TCTTTTTTCTTTC
Found at i:18074 original size:9 final size:9
Alignment explanation
Indices: 18041--18066 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
18031 ATCAAGTCCA
18041 ATTGTTAAT
1 ATTGTTAAT
18050 ATTGTTAAT
1 ATTGTTAAT
18059 ATTGTTAA
1 ATTGTTAA
18067 ATTTGTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (9 bp):
ATTGTTAAT
Found at i:26371 original size:341 final size:341
Alignment explanation
Indices: 25748--26431 Score: 1332
Period size: 341 Copynumber: 2.0 Consensus size: 341
25738 GTGTTTGACC
*
25748 ATTGGATTGGGCTGTAAAAGTACTATAGAGGTCATTGTATTAGGAGTTGTATTGTAATTTGCACC
1 ATTGGATTGGGCTGTAAAAGTACTATAGAGGTCATTGTATTAGGAGTTATATTGTAATTTGCACC
25813 TTCTACTTAAAAAAATGGACAAATTAATCCCTGGACATTAGATCATGGAGCAAATCGGTCATGCG
66 TTCTACTTAAAAAAATGGACAAATTAATCCCTGGACATTAGATCATGGAGCAAATCGGTCATGCG
25878 TAATTGTCTAGTTATTTTGTCAGCAATGCTAGTGTTTTAATGATAGAAATAGATGGAATTTTAAC
131 TAATTGTCTAGTTATTTTGTCAGCAATGCTAGTGTTTTAATGATAGAAATAGATGGAATTTTAAC
25943 AAAAAGGGTCAGTTTGCTCTTTAATCTAACGTAGATGGACTAATTTGTCCACTTTTTGAAGGAGC
196 AAAAAGGGTCAGTTTGCTCTTTAATCTAACGTAGATGGACTAATTTGTCCACTTTTTGAAGGAGC
26008 AAAATACAATATAGCTCCTAATACAAGGTCCTTCACGATACTTTTATTGGCATTTTTGTTTTCTT
261 AAAATACAATATAGCTCCTAATACAAGGTCCTTCACGATACTTTTATTGGCATTTTTGTTTTCTT
26073 GTTCTTGGCACTTTTT
326 GTTCTTGGCACTTTTT
*
26089 ATTGGATTGGGCTGTAAAATTACTATAGAGGTCATTGTATTAGGAGTTATATTGTAATTTGCACC
1 ATTGGATTGGGCTGTAAAAGTACTATAGAGGTCATTGTATTAGGAGTTATATTGTAATTTGCACC
26154 TTCTACTTAAAAAAATGGACAAATTAATCCCTGGACATTAGATCATGGAGCAAATCGGTCATGCG
66 TTCTACTTAAAAAAATGGACAAATTAATCCCTGGACATTAGATCATGGAGCAAATCGGTCATGCG
26219 TAATTGTCTAGTTATTTTGTCAGCAATGCTAGTGTTTTAATGATAGAAATAGATGGAATTTTAAC
131 TAATTGTCTAGTTATTTTGTCAGCAATGCTAGTGTTTTAATGATAGAAATAGATGGAATTTTAAC
26284 AAAAAGGGTCAGTTTGCTCTTTAATCTAACGTAGATGGACTAATTTGTCCACTTTTTGAAGGAGC
196 AAAAAGGGTCAGTTTGCTCTTTAATCTAACGTAGATGGACTAATTTGTCCACTTTTTGAAGGAGC
* *
26349 AAAATACAATCTAGCTCCTAATACAAGGTCCTTCACGATATTTTTATTGGCATTTTTGTTTTCTT
261 AAAATACAATATAGCTCCTAATACAAGGTCCTTCACGATACTTTTATTGGCATTTTTGTTTTCTT
26414 GTTCTTGGCACTTTTT
326 GTTCTTGGCACTTTTT
26430 AT
1 AT
26432 ACATGCACAC
Statistics
Matches: 339, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
341 339 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (341 bp):
ATTGGATTGGGCTGTAAAAGTACTATAGAGGTCATTGTATTAGGAGTTATATTGTAATTTGCACC
TTCTACTTAAAAAAATGGACAAATTAATCCCTGGACATTAGATCATGGAGCAAATCGGTCATGCG
TAATTGTCTAGTTATTTTGTCAGCAATGCTAGTGTTTTAATGATAGAAATAGATGGAATTTTAAC
AAAAAGGGTCAGTTTGCTCTTTAATCTAACGTAGATGGACTAATTTGTCCACTTTTTGAAGGAGC
AAAATACAATATAGCTCCTAATACAAGGTCCTTCACGATACTTTTATTGGCATTTTTGTTTTCTT
GTTCTTGGCACTTTTT
Found at i:38728 original size:115 final size:108
Alignment explanation
Indices: 38548--38773 Score: 290
Period size: 115 Copynumber: 2.0 Consensus size: 108
38538 CCTTGGCAGT
* * * * *
38548 AAATTCATGGCTGGATCAATTTGCTGATTTGGATATTTTTCTGGGATTCTTTATATAAAATTTAT
1 AAATGCATGGCTGGATCAATATGCTGATTAGGATATTTTACTGGGATTCCTTATATAAAATTTA-
* *
38613 TTATTCTTTTATGAATTTTCTGACTCAAGCTCATATATTCTATATAAGG
65 TT-TT-TTGTA--AATTTGCTGACTCAAGCTCATATATTCTATAT-AGG
* *
38662 AAATGCATGGCTGGATCAATATGTTGAATTAGGATATTTTACTGGGATTCCTTGTATAAAATTTA
1 AAATGCATGGCTGGATCAATATGCTG-ATTAGGATATTTTACTGGGATTCCTTATATAAAATTTA
* *
38727 TTTTTTGTAAATTTGCTGACTCAAGTTCATATATTCTGTATAGG
65 TTTTTTGTAAATTTGCTGACTCAAGCTCATATATTCTATATAGG
38771 AAA
1 AAA
38774 ATAGCGAGTG
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
109 6 0.06
110 29 0.29
112 4 0.04
113 2 0.02
114 25 0.25
115 34 0.34
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.44
Consensus pattern (108 bp):
AAATGCATGGCTGGATCAATATGCTGATTAGGATATTTTACTGGGATTCCTTATATAAAATTTAT
TTTTTGTAAATTTGCTGACTCAAGCTCATATATTCTATATAGG
Found at i:40261 original size:210 final size:203
Alignment explanation
Indices: 39706--40344 Score: 696
Period size: 202 Copynumber: 3.1 Consensus size: 203
39696 CATTTTTGTG
* * * *
39706 GATATGAGGACAAACCTCC-GAGGATGCTCTGAATGCATAGAAAACCTT-TAAAAAAATGATCTA
1 GATATGAGGACATACCTCCAAAGG-TGCTCCGAATGCATAGAAAACCTTAAAAAAAAATGATCTA
* *
39769 TATCTGTGTTTGACACTCACAC-----TCGAGTC-AGGTTCAAGAACCACCAATTATTGTATTTT
65 TATCTGTGTCTGACACTCACACTTGAGTCGAGTCGAGGTTCAAGAACCACCAATTAGTGTATTTT
* ** * *
39828 TATTGTTGTTCATTACTCATT-ATTCATGTTGCTCCAACTTTTCATTTTTCTGGATATACTTGTG
130 TATTGTTGTTCGTTACTCATTGATTCATGTTGCTCTGACTTTTCATTTTTGTGGATATACCTGTG
*
39892 TTTCTAACAAAT
195 -TTC-AAC-ACT
** * * *
39904 GGATATGAGGATGTACCTCCAAAGATGCTCCGAATGCATAGAAAACCTCAAAAAAAATATGATCC
1 -GATATGAGGACATACCTCCAAAGGTGCTCCGAATGCATAGAAAACCTTAAAAAAAA-ATGATCT
* * * * * ** *
39969 ATATCCGTGTCTAAAACTCACACTTGAGT---G-CGAGTTTCACGAAGTACCAATTAGTGTAATT
64 ATATCTGTGTCTGACACTCACACTTGAGTCGAGTCGAGGTTCAAGAACCACCAATTAGTGTATTT
40030 TTATTGTTGTTCGTTACTCATTGATTGTCCATGTTGCTCTGACTTTTCATTTTTGTGGATATACC
129 TTATTGTTGTTCGTTACTCATTGA-T-T-CATGTTGCTCTGACTTTTCATTTTTGTGGATATACC
*
40095 TATGTTCAACACT
191 TGTGTTCAACACT
* *
40108 -ATATGAGGACATACCTCCAAAGGTGCCCCGAATGCATAGAAATCCTTAAAAAGAAAATGATCTA
1 GATATGAGGACATACCTCCAAAGGTGCTCCGAATGCATAGAAAACCTTAAAAA-AAAATGATC--
* *
40172 TATATCTGTGTCTGACACTCACACTTGAGTCCGAGTCAGAGGTTCATGAACCATCAATTAGTGTA
63 TATATCTGTGTCTGACACTCACACTTGAGT-CGAGTC-GAGGTTCAAGAACCACCAATTAGTGTA
* * *
40237 TTTTTATTGTTGTTCGTTACTCATTG-TTCATGTTGCTCTGATTTTTCTTTTTTGCGGATATACC
126 TTTTTATTGTTGTTCGTTACTCATTGATTCATGTTGCTCTGACTTTTCATTTTTGTGGATATACC
**
40301 TGTGTTTGACACAT
191 TGTGTTCAACAC-T
* *
40315 GGGTATGAGGACATACCTCCAAAGATGCTC
1 -GATATGAGGACATACCTCCAAAGGTGCTC
40345 TGTATCGTGT
Statistics
Matches: 364, Mismatches: 51, Indels: 40
0.80 0.11 0.09
Matches are distributed among these distances:
199 38 0.10
200 8 0.02
201 25 0.07
202 53 0.15
203 48 0.13
204 29 0.08
205 4 0.01
206 47 0.13
207 37 0.10
208 2 0.01
209 26 0.07
210 47 0.13
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (203 bp):
GATATGAGGACATACCTCCAAAGGTGCTCCGAATGCATAGAAAACCTTAAAAAAAAATGATCTAT
ATCTGTGTCTGACACTCACACTTGAGTCGAGTCGAGGTTCAAGAACCACCAATTAGTGTATTTTT
ATTGTTGTTCGTTACTCATTGATTCATGTTGCTCTGACTTTTCATTTTTGTGGATATACCTGTGT
TCAACACT
Found at i:53823 original size:15 final size:14
Alignment explanation
Indices: 53796--53835 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
53786 TTGGAAATCA
53796 AGAAACAGAAAAAAG
1 AGAAA-AGAAAAAAG
53811 AGAAAAGATAAAAAG
1 AGAAAAGA-AAAAAG
*
53826 AAAAAAGAAA
1 AGAAAAGAAA
53836 TGGTTGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.03
Consensus pattern (14 bp):
AGAAAAGAAAAAAG
Found at i:57953 original size:21 final size:21
Alignment explanation
Indices: 57927--57967 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
57917 AGAATCCAAG
57927 AGAATGAAGATAAGGATGAAA
1 AGAATGAAGATAAGGATGAAA
57948 AGAATGAAGATAAGGATGAA
1 AGAATGAAGATAAGGATGAA
57968 GATTTTGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAATGAAGATAAGGATGAAA
Found at i:57968 original size:12 final size:12
Alignment explanation
Indices: 57930--57970 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
57920 ATCCAAGAGA
57930 ATGAAGATAAGG
1 ATGAAGATAAGG
*
57942 ATG-A-A-AAGA
1 ATGAAGATAAGG
57951 ATGAAGATAAGG
1 ATGAAGATAAGG
57963 ATGAAGAT
1 ATGAAGAT
57971 TTTGCTGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 6 0.25
10 2 0.08
11 2 0.08
12 14 0.58
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (12 bp):
ATGAAGATAAGG
Found at i:60389 original size:31 final size:30
Alignment explanation
Indices: 60326--60390 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
60316 TAATGTCTAA
* * *
60326 TGACCAAAAAAGAAAAATTCGAATATTTGG
1 TGACCAAAAAAGAAAAAGTCAAATATTGGG
*
60356 TGACCAAAAAAGAAAAGGTCAAATAGTTGGG
1 TGACCAAAAAAGAAAAAGTCAAATA-TTGGG
60387 TGAC
1 TGAC
60391 TACCGGTGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 22 0.73
31 8 0.27
ACGTcount: A:0.48, C:0.11, G:0.22, T:0.20
Consensus pattern (30 bp):
TGACCAAAAAAGAAAAAGTCAAATATTGGG
Found at i:61289 original size:2 final size:2
Alignment explanation
Indices: 61278--61307 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
61268 CTATATATAT
*
61278 AG AG AT AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
61308 CATACGCAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (2 bp):
AG
Found at i:65806 original size:113 final size:113
Alignment explanation
Indices: 65608--65834 Score: 454
Period size: 113 Copynumber: 2.0 Consensus size: 113
65598 AGGTATATAC
65608 TTATTTAAACTTTGATTAACACGTACTGCAATATTAAAACTTTAAGAACTCAATTAAAGAACCAA
1 TTATTTAAACTTTGATTAACACGTACTGCAATATTAAAACTTTAAGAACTCAATTAAAGAACCAA
65673 TTTAAAATCTGAACTATAATTCGGGGATTTCTAATGCAAATTAACCCA
66 TTTAAAATCTGAACTATAATTCGGGGATTTCTAATGCAAATTAACCCA
65721 TTATTTAAACTTTGATTAACACGTACTGCAATATTAAAACTTTAAGAACTCAATTAAAGAACCAA
1 TTATTTAAACTTTGATTAACACGTACTGCAATATTAAAACTTTAAGAACTCAATTAAAGAACCAA
65786 TTTAAAATCTGAACTATAATTCGGGGATTTCTAATGCAAATTAACCCA
66 TTTAAAATCTGAACTATAATTCGGGGATTTCTAATGCAAATTAACCCA
65834 T
1 T
65835 AAACATAAAA
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 114 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (113 bp):
TTATTTAAACTTTGATTAACACGTACTGCAATATTAAAACTTTAAGAACTCAATTAAAGAACCAA
TTTAAAATCTGAACTATAATTCGGGGATTTCTAATGCAAATTAACCCA
Found at i:67518 original size:2 final size:2
Alignment explanation
Indices: 67511--67537 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67501 TACATAAAAC
67511 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
67538 TACATAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73224 original size:10 final size:10
Alignment explanation
Indices: 73209--73233 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
73199 CCTTTAAGCA
73209 AAAAAAAAAG
1 AAAAAAAAAG
73219 AAAAAAAAAG
1 AAAAAAAAAG
73229 AAAAA
1 AAAAA
73234 GGCATCGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:74328 original size:29 final size:30
Alignment explanation
Indices: 74286--74365 Score: 99
Period size: 29 Copynumber: 2.6 Consensus size: 30
74276 ATTTAGGATC
*
74286 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTGCACAT
*
74316 AAATCAAAGTTCATGTATATAATTGCACATT
1 AAATCAAAGTTCATGTATAAAATTGCACA-T
* *
74347 AAATCATAGTTCATATATA
1 AAATCAAAGTTCATGTATA
74366 GTTTTGAGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 22 0.50
30 5 0.11
31 17 0.39
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTGCACAT
Found at i:77697 original size:3 final size:3
Alignment explanation
Indices: 77689--77720 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
77679 TTAACTCTAC
77689 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
77721 ACAACAACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:77880 original size:18 final size:18
Alignment explanation
Indices: 77857--77891 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77847 CTCAAATATA
77857 ATAATTATAATTATAAGC
1 ATAATTATAATTATAAGC
* *
77875 ATAATTCTAATTTTAAG
1 ATAATTATAATTATAAG
77892 AAAATAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (18 bp):
ATAATTATAATTATAAGC
Found at i:78482 original size:20 final size:20
Alignment explanation
Indices: 78459--78563 Score: 74
Period size: 20 Copynumber: 5.3 Consensus size: 20
78449 TTTTTATGAC
78459 TTTACCCAAATATCTAAAGA
1 TTTACCCAAATATCTAAAGA
**
78479 TTTA-CCAATATATCTAACTA
1 TTTACCCAA-ATATCTAAAGA
*
78499 -TT-CCCAATATTTCTAAAGA
1 TTTACCCAA-ATATCTAAAGA
* *
78518 TTTAGCAAAATATCTAACA-A
1 TTTACCCAAATATCTAA-AGA
* * * *
78538 TTTATCAAAATTTCTAAAAA
1 TTTACCCAAATATCTAAAGA
78558 TTTACC
1 TTTACC
78564 AATATTTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
19 20 0.29
20 44 0.65
21 4 0.06
ACGTcount: A:0.43, C:0.18, G:0.03, T:0.36
Consensus pattern (20 bp):
TTTACCCAAATATCTAAAGA
Found at i:78516 original size:39 final size:39
Alignment explanation
Indices: 78463--78568 Score: 124
Period size: 39 Copynumber: 2.7 Consensus size: 39
78453 TATGACTTTA
* *
78463 CCCAAATATCTAAAGATTTACCAATATATCTAACTA-TT
1 CCCAAATTTCTAAAGATTTACCAATATATCTAACAATTT
* *
78501 CCCAATATTTCTAAAGATTTAGCAAAATATCTAACAATTT
1 CCCAA-ATTTCTAAAGATTTACCAATATATCTAACAATTT
* * *
78541 ATCAAAATTTCTAAAAATTTACCAATAT
1 -CCCAAATTTCTAAAGATTTACCAATAT
78569 TTATGAGACT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
38 5 0.09
39 27 0.48
40 21 0.38
41 3 0.05
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (39 bp):
CCCAAATTTCTAAAGATTTACCAATATATCTAACAATTT
Found at i:78570 original size:20 final size:20
Alignment explanation
Indices: 78471--78616 Score: 98
Period size: 20 Copynumber: 7.3 Consensus size: 20
78461 TACCCAAATA
* *
78471 TCTAAAGATTTACCAATATA
1 TCTAAAAATTTACCAATATT
** *
78491 TCTAACTA-TTCCCAATATT
1 TCTAAAAATTTACCAATATT
* * * *
78510 TCTAAAGATTTAGCAAAATA
1 TCTAAAAATTTACCAATATT
* * *
78530 TCTAACAATTTATCAAAATT
1 TCTAAAAATTTACCAATATT
78550 TCTAAAAATTTACCAATATT
1 TCTAAAAATTTACCAATATT
* * * * *
78570 TATGAGACTTTACCAAAAATT
1 TCTAAAAATTTACC-AATATT
* *
78591 T-TAAAATTTTACCGATATT
1 TCTAAAAATTTACCAATATT
78610 TCTAAAA
1 TCTAAAA
78617 TTTCTAACTC
Statistics
Matches: 96, Mismatches: 27, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
19 20 0.21
20 70 0.73
21 6 0.06
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (20 bp):
TCTAAAAATTTACCAATATT
Found at i:78587 original size:40 final size:39
Alignment explanation
Indices: 78456--78613 Score: 124
Period size: 40 Copynumber: 4.0 Consensus size: 39
78446 AAATTTTTAT
* * *
78456 GACTTTACCCAAATATCTAAAGATTTACCAATATATCTA
1 GACTTTACCAAAATTTCTAAAAATTTACCAATATATCTA
* * * * *
78495 -ACTATTCCCAATATTTCTAAAGATTTAGCAAAATATCTA
1 GACT-TTACCAAAATTTCTAAAAATTTACCAATATATCTA
* * *
78534 -ACAATTTATCAAAATTTCTAAAAATTTACCAATATTTATGA
1 GAC--TTTACCAAAATTTCTAAAAATTTACCAATATATCT-A
* * *
78575 GACTTTACCAAAAATTT-TAAAATTTTACCGATATTTCTA
1 GACTTTACC-AAAATTTCTAAAAATTTACCAATATATCTA
78614 AAATTTCTAA
Statistics
Matches: 95, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
38 3 0.03
39 32 0.34
40 49 0.52
41 9 0.09
42 2 0.02
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.37
Consensus pattern (39 bp):
GACTTTACCAAAATTTCTAAAAATTTACCAATATATCTA
Found at i:80672 original size:58 final size:59
Alignment explanation
Indices: 80562--81098 Score: 435
Period size: 58 Copynumber: 9.3 Consensus size: 59
80552 AGATGAGATT
* * * * *
80562 AAATGCAATTTTTGGATA-TCCGAGGGCAAAATAGTAATTTTT-GAAGGTTCGAGGTCAA
1 AAATGGAATTTTTGGA-AGTTCGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTCAA
*
80620 AAATGGAA-TTTTGGACA-TCCGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTCAA
1 AAATGGAATTTTTGGA-AGTTCGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTCAA
* *
80678 AAATGGAATTTTTGGAAGTTCGAGGGTAAAATAGTAA-TTTTGGAAAGTT-TAGGGTC-A
1 AAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAAGTTCGA-GGTCAA
* * * * ** *
80735 AAATGAAATTTTTAGAAGTT-TAGGGGTAAAATGGTGATTTTTGG-AAGTTAAAGGTAAA
1 AAATGGAATTTTTGGAAGTTCGA-GGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTCAA
* ** * *
80793 AAATGTG-ATATTCAGAAGTT-TAGGGGT-AAATGGTAATTTTTGGAAAGTTCGAGGTAAA
1 AAATG-GAATTTTTGGAAGTTCGA-GGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTCAA
* * * *
80851 AAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTGATTTTTGAAAAGTTTGGGGTCAA
1 AAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTCAA
* * * *
80910 AAATGTG-ATTTTTAGAAGTT-TAGGGGTAAAATGGTAA-TTTTGG-AAGTT-TAGGCGACAA
1 AAATG-GAATTTTTGGAAGTTCGA-GGGTAAAATGGTAATTTTTGGAAAGTTCGA-G-GTCAA
* * *
80968 AAATGTG-ATTTTTAGAAGTT-TAGGGGT-AAATGGTAATTTTTGG-AAGTTCTG-GGGCAA
1 AAATG-GAATTTTTGGAAGTTCGA-GGGTAAAATGGTAATTTTTGGAAAGTTC-GAGGTCAA
* *
81025 AAATGTG-ATTTTTGAAAGTTCG-GGGCTAAAATGGTAA-TTTTGGAAA-TTTGAGGGT-AA
1 AAATG-GAATTTTTGGAAGTTCGAGGG-TAAAATGGTAATTTTTGGAAAGTTCGA-GGTCAA
*
81082 AAATGCAATTTTTGGAA
1 AAATGGAATTTTTGGAA
81099 AGCTTGAGGG
Statistics
Matches: 406, Mismatches: 46, Indels: 55
0.80 0.09 0.11
Matches are distributed among these distances:
56 5 0.01
57 148 0.36
58 171 0.42
59 81 0.20
60 1 0.00
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (59 bp):
AAATGGAATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGGTCAA
Found at i:80906 original size:29 final size:28
Alignment explanation
Indices: 80642--81098 Score: 292
Period size: 29 Copynumber: 15.8 Consensus size: 28
80632 GGACATCCGA
*
80642 GGGTAAAATGGTAATTTTTGGAAAGTTCG
1 GGGTAAAATGGTAATTTTTGG-AAGTTTG
* *
80671 AGGTCAAAAATGG-AATTTTTGGAAGTTCG
1 GGGT--AAAATGGTAATTTTTGGAAGTTTG
* *
80700 AGGGTAAAATAGTAA-TTTTGGAAAGTTTA
1 -GGGTAAAATGGTAATTTTTGG-AAGTTTG
* *
80729 GGGTCAAAAT-GAAATTTTTAGAAGTTTAG
1 GGGT-AAAATGGTAATTTTTGGAAGTTT-G
* **
80758 GGGTAAAATGGTGATTTTTGGAAGTTAA
1 GGGTAAAATGGTAATTTTTGGAAGTTTG
* * * **
80786 AGGTAAAAAAT-GTGATATTCAGAAGTTTAG
1 GGGT--AAAATGGTAATTTTTGGAAGTTT-G
*
80816 GGGT-AAATGGTAATTTTTGGAAAGTTCG
1 GGGTAAAATGGTAATTTTTGG-AAGTTTG
* *
80844 AGGTAAAAAATGG-AATTTTTGGAAGTTCG
1 GGGT--AAAATGGTAATTTTTGGAAGTTTG
* *
80873 AGGGTAAAATGGTGATTTTTGAAAAGTTTG
1 -GGGTAAAATGGTAATTTTTG-GAAGTTTG
* *
80903 GGGTCAAAAAT-GTGATTTTTAGAAGTTTAG
1 GGGT--AAAATGGTAATTTTTGGAAGTTT-G
80933 GGGTAAAATGGTAA-TTTTGGAAGTTTAG
1 GGGTAAAATGGTAATTTTTGGAAGTTT-G
** * *
80961 GCGACAAAAAT-GTGATTTTTAGAAGTTTAG
1 G-G-GTAAAATGGTAATTTTTGGAAGTTT-G
80991 GGGT-AAATGGTAATTTTTGGAAGTTCTG
1 GGGTAAAATGGTAATTTTTGGAAGTT-TG
* * * *
81019 GGGCAAAAAT-GTGATTTTTGAAAGTTCG
1 GGG-TAAAATGGTAATTTTTGGAAGTTTG
*
81047 GGGCTAAAATGGTAA-TTTTGGAAATTTG
1 GGG-TAAAATGGTAATTTTTGGAAGTTTG
*
81075 AGGGTAAAAAT-GCAATTTTTGGAA
1 -GGGT-AAAATGGTAATTTTTGGAA
81099 AGCTTGAGGG
Statistics
Matches: 341, Mismatches: 52, Indels: 70
0.74 0.11 0.15
Matches are distributed among these distances:
27 8 0.02
28 112 0.33
29 128 0.38
30 75 0.22
31 18 0.05
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (28 bp):
GGGTAAAATGGTAATTTTTGGAAGTTTG
Found at i:81099 original size:29 final size:28
Alignment explanation
Indices: 80562--81108 Score: 182
Period size: 29 Copynumber: 18.9 Consensus size: 28
80552 AGATGAGATT
* * ** *
80562 AAATGCAATTTTTGGATATCCGAGGGCA
1 AAATGTAATTTTTGGAAATTTGAGGGTA
* *
80590 AAATAGTAATTTTT-GAAGGTTCGA-GGTCAA
1 AAAT-GTAATTTTTGGAA-ATTTGAGGGT--A
* * **
80620 AAATGGAA-TTTTGGACATCCGAGGGTA
1 AAATGTAATTTTTGGAAATTTGAGGGTA
*
80647 AAATGGTAATTTTTGGAAAGTTCGA-GGTCAA
1 AAAT-GTAATTTTTGGAAA-TTTGAGGGT--A
* * *
80678 AAATGGAATTTTTGGAAGTTCGAGGGTA
1 AAATGTAATTTTTGGAAATTTGAGGGTA
80706 AAATAGTAA-TTTTGGAAAGTTT-AGGGTCA
1 AAAT-GTAATTTTTGGAAA-TTTGAGGGT-A
* * *
80735 AAATGAAATTTTTAGAAGTTT-AGGGGTA
1 AAATGTAATTTTTGGAAATTTGA-GGGTA
* * * *
80763 AAATGGTGATTTTTGG-AAGTTAAAGGTAAA
1 AAAT-GTAATTTTTGGAAATTTGAGGGT--A
* * ** *
80793 AAATGTGATATTCAGAAGTTT-AGGGGT-
1 AAATGTAATTTTTGGAAATTTGA-GGGTA
*
80820 AAATGGTAATTTTTGGAAAGTTCGA-GGTAAA
1 AAAT-GTAATTTTTGGAAA-TTTGAGGGT--A
* * *
80851 AAATGGAATTTTTGGAAGTTCGAGGGTA
1 AAATGTAATTTTTGGAAATTTGAGGGTA
* *
80879 AAATGGTGATTTTTGAAAAGTTTG-GGGTCAA
1 AAAT-GTAATTTTTGGAAA-TTTGAGGGT--A
* * *
80910 AAATGTGATTTTTAGAAGTTT-AGGGGTA
1 AAATGTAATTTTTGGAAATTTGA-GGGTA
* *
80938 AAATGGTAA-TTTTGGAAGTTT-AGGCGACAA
1 AAAT-GTAATTTTTGGAAATTTGAGG-G--TA
* * *
80968 AAATGTGATTTTTAGAAGTTT-AGGGGT-
1 AAATGTAATTTTTGGAAATTTGA-GGGTA
* *
80995 AAATGGTAATTTTTGGAAGTTCTG-GGGCAA
1 AAAT-GTAATTTTTGGAAATT-TGAGGG-TA
* *
81025 AAATGTGATTTTT-GAAAGTTCG-GGGCTA
1 AAATGTAATTTTTGGAAA-TTTGAGGG-TA
81053 AAATGGTAA-TTTTGGAAATTTGAGGGTAA
1 AAAT-GTAATTTTTGGAAATTTGAGGGT-A
* *
81082 AAATGCAATTTTTGGAAAGCTTGAGGG
1 AAATGTAATTTTTGGAAA-TTTGAGGG
81109 CCTTCTAGGT
Statistics
Matches: 400, Mismatches: 65, Indels: 106
0.70 0.11 0.19
Matches are distributed among these distances:
27 15 0.04
28 131 0.33
29 140 0.35
30 98 0.25
31 16 0.04
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (28 bp):
AAATGTAATTTTTGGAAATTTGAGGGTA
Found at i:84374 original size:14 final size:13
Alignment explanation
Indices: 84357--84414 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 13
84347 TATTAAACCC
84357 ATATTTAATCATTT
1 ATATTTAAT-ATTT
84371 ATATTTAATAATATT
1 ATATTTAAT-AT-TT
84386 AATATTCTAA-ATTT
1 -ATATT-TAATATTT
84400 AT-TTTAATATTT
1 ATATTTAATATTT
84412 ATA
1 ATA
84415 ATGATTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
11 3 0.08
12 8 0.21
13 2 0.05
14 13 0.34
15 4 0.11
16 5 0.13
17 3 0.08
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATTTAATATTT
Found at i:86128 original size:168 final size:168
Alignment explanation
Indices: 85808--86245 Score: 681
Period size: 168 Copynumber: 2.6 Consensus size: 168
85798 GTCCATGCCG
* * * ** *
85808 AAGCCAGCAGGATTGTAGGTCTCCACTCATTTGTTTAAATGGTAAATGCGATGATAACCCTGATA
1 AAGCCAACAGGAATGCAGGTCTCCACTCATTTGTTTAAATGGTAAATGTAATGATAACCCT--TC
* ** ** * *
85873 C--TAACATCCGATTATGTGCT-TCATTAAAAAGACC-TC--CACGACCTCCACCATCCCCACGA
64 CGGTAAAATCAAATTATGTGCTCT-ATTACCAAGACCGCCAGCACCACCTCCACCATCCCCACGA
85932 TTCTCACCTCCACCTCCCTTTGGTTGTTTTGTGCCGTGTCA
128 TTCTCACCTCCACCTCCCTTTGGTTGTTTTGTGCCGTGTCA
*
85973 AAGCCAACAGGAATGCAGGTTTCCACTCATTTGTTTAAATGGTAAATGTAATGATAACCCTTCCG
1 AAGCCAACAGGAATGCAGGTCTCCACTCATTTGTTTAAATGGTAAATGTAATGATAACCCTTCCG
86038 GTAAAATCAAATTATGTGCTCTATTACCAAGACCGCCAGCACCACCTCCACCATCCCCACGATTC
66 GTAAAATCAAATTATGTGCTCTATTACCAAGACCGCCAGCACCACCTCCACCATCCCCACGATTC
86103 TCACCTCCACCTCCCTTTGGTTGTTTTGTGCCGTGTCA
131 TCACCTCCACCTCCCTTTGGTTGTTTTGTGCCGTGTCA
86141 AAGCCAACAGGAATGCAGGTCTCCACTCATTTGTTTAAATGGTAAATGTAATGATAACCCTTCCG
1 AAGCCAACAGGAATGCAGGTCTCCACTCATTTGTTTAAATGGTAAATGTAATGATAACCCTTCCG
86206 GTAAAATCAAATTATGTGCTCTATTACCAAGACCGCCAGC
66 GTAAAATCAAATTATGTGCTCTATTACCAAGACCGCCAGC
Statistics
Matches: 252, Mismatches: 15, Indels: 9
0.91 0.05 0.03
Matches are distributed among these distances:
163 2 0.01
165 81 0.32
166 2 0.01
168 167 0.66
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (168 bp):
AAGCCAACAGGAATGCAGGTCTCCACTCATTTGTTTAAATGGTAAATGTAATGATAACCCTTCCG
GTAAAATCAAATTATGTGCTCTATTACCAAGACCGCCAGCACCACCTCCACCATCCCCACGATTC
TCACCTCCACCTCCCTTTGGTTGTTTTGTGCCGTGTCA
Done.