Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012024.1 Kokia drynarioides strain JFW-HI SEQ_127022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8385
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36


Found at i:404 original size:15 final size:15

Alignment explanation


    Indices: 384--412  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        374 AGGACTTATA

                           
        384 GAAGCAAAGAGAATC
          1 GAAGCAAAGAGAATC

                          
        399 GAAGCAAAGAGAAT
          1 GAAGCAAAGAGAAT

        413 GAAAAAAATA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.55, C:0.10, G:0.28, T:0.07


Consensus pattern (15 bp):   
GAAGCAAAGAGAATC
Done.