genome.fa.s12026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012026.1 Kokia drynarioides strain JFW-HI SEQ_127024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63998

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6547--6584	16	2.4	15	87	12	58	0	31	0	68	0.90
28255--28286	16	1.9	17	93	6	57	15	9	25	50	1.74
33763--33802	20	2.0	20	90	0	62	25	5	20	50	1.68
33711--33857	73	2.0	74	84	7	192	26	6	27	40	1.79
33783--34132	55	6.4	55	89	0	457	24	6	31	37	1.80
34114--34152	20	2.0	20	94	0	69	23	5	17	53	1.63
33893--34612	240	3.0	238	78	5	786	26	5	29	38	1.80
34059--34207	75	2.0	75	89	0	226	24	4	28	42	1.75
34134--34317	55	3.3	55	86	0	260	27	4	28	39	1.76
34003--34262	130	2.0	130	83	0	331	25	5	28	40	1.77
33948--34500	185	3.0	185	87	0	755	25	5	29	39	1.79
34298--34337	20	2.0	20	100	0	80	25	5	20	50	1.68
34189--34447	130	2.0	130	89	0	392	27	5	28	38	1.77
34244--34392	75	2.0	75	90	0	235	25	5	29	39	1.78
34319--34634	55	5.7	55	83	0	371	27	6	28	37	1.83
34319--34634	165	1.9	165	84	0	416	27	6	28	37	1.83
35191--35320	56	2.3	55	84	5	163	26	5	27	40	1.78
35302--35340	20	2.0	20	89	0	60	28	7	10	53	1.62
35249--35456	75	2.8	75	92	0	326	26	5	25	42	1.76
35376--35424	20	2.5	20	83	3	64	32	6	10	51	1.61
35397--35586	55	3.5	55	85	1	238	28	4	26	40	1.76
38470--38512	18	2.5	17	76	3	50	34	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39748--39836	38	2.4	38	75	5	101	35	20	5	38	1.76
41853--41904	24	2.2	23	89	3	77	61	1	3	32	1.25
41851--41903	8	6.6	8	76	8	54	62	1	3	32	1.24
44992--45024	16	1.9	18	88	11	52	39	6	3	51	1.42
47652--47705	26	2.1	26	85	0	72	33	7	5	53	1.52
47659--47714	26	2.2	26	93	0	94	33	5	8	51	1.56
56523--56571	18	2.7	17	81	12	62	69	0	0	30	0.89
56525--56565	10	4.1	10	79	20	50	73	0	0	26	0.84
61317--61356	21	2.0	20	85	5	53	55	2	10	32	1.47

Tables:   1

The End!