genome.fa.s12027.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012027.1 Kokia drynarioides strain JFW-HI SEQ_127025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144542

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9463--9643	96	1.9	96	85	6	251	37	13	18	30	1.89
10036--10281	29	8.4	29	83	8	279	32	4	27	35	1.77
10036--10280	87	2.8	87	84	9	320	32	4	27	35	1.77
11353--11465	3	36.7	3	78	15	106	36	4	0	58	1.24
12138--12207	6	12.2	6	73	19	60	51	2	1	44	1.25
12131--12176	23	2.0	22	95	4	83	54	2	0	43	1.12
12144--12207	17	3.8	17	87	0	92	51	3	1	43	1.26
13555--13606	24	2.2	24	85	0	68	55	7	3	32	1.46
15205--15258	29	1.9	28	85	14	76	20	18	7	53	1.68
17898--17940	18	2.3	20	80	15	56	51	11	0	37	1.39
18154--18296	29	4.8	29	74	9	135	39	0	35	25	1.56
18152--18327	90	1.9	91	96	1	327	39	0	35	25	1.56
18370--18431	30	2.1	30	90	0	97	45	0	37	17	1.49
19588--19650	6	11.0	6	76	10	69	41	0	3	55	1.16
19588--19641	23	2.4	21	96	0	63	42	0	1	55	1.10
19574--19650	17	4.1	17	77	19	73	40	1	2	55	1.22
21534--21639	29	3.6	29	74	12	83	29	19	6	44	1.76
21562--21677	30	3.9	30	70	17	80	31	18	6	43	1.74
21534--21785	59	4.3	58	74	9	163	32	22	5	38	1.77
21651--21722	30	2.5	29	78	14	85	37	25	2	34	1.70
21587--21770	29	6.3	27	68	17	84	35	20	5	38	1.76
21599--21810	117	1.8	118	79	7	252	34	23	4	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27508--27668	65	2.4	63	79	11	180	34	1	16	47	1.55
32964--33007	14	2.8	16	86	10	56	65	0	0	34	0.93
34511--34545	10	3.6	10	84	7	54	54	0	2	42	1.15
38170--38474	43	7.3	43	79	5	295	29	26	18	25	1.98
38320--38392	37	2.0	37	86	0	101	27	30	19	23	1.98
38212--38438	80	2.7	82	80	6	253	30	26	18	24	1.98
50820--50849	15	1.9	16	93	6	53	43	16	0	40	1.48
54710--54777	33	2.0	35	85	5	95	33	5	8	51	1.57
55673--55863	95	2.0	95	98	0	373	39	21	18	19	1.92
59455--59494	17	2.4	17	79	12	55	5	27	5	62	1.37
71450--71608	40	4.0	40	89	1	230	28	19	30	22	1.98
72797--72840	20	2.2	20	83	4	52	45	2	9	43	1.48
79642--79676	17	2.0	17	88	5	52	60	0	5	34	1.21
100202--100281	27	3.1	26	65	31	64	41	27	5	26	1.76
101280--101399	46	2.6	46	87	0	177	20	23	12	43	1.86
106640--106773	45	3.0	45	86	0	187	24	20	14	41	1.89
106640--106860	90	2.5	90	78	8	211	24	18	14	42	1.88
125750--125774	8	3.1	8	100	0	50	48	12	12	28	1.76
126618--126675	27	2.1	27	96	0	107	31	3	12	53	1.54
134390--134433	23	1.9	23	86	9	63	43	15	13	27	1.85
135469--135504	15	2.4	15	95	0	63	33	19	22	25	1.97
136836--136880	16	2.6	17	82	10	56	53	2	2	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136994--137044	15	3.5	15	78	5	68	62	1	0	35	1.06
142507--142567	30	2.0	30	90	0	95	21	6	16	55	1.63

Tables:   1

The End!