genome.fa.s12029.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012029.1 Kokia drynarioides strain JFW-HI SEQ_127027, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203134

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1793--1839	23	2.0	24	87	4	69	27	27	21	23	1.99
3551--3579	2	14.5	2	100	0	58	51	0	0	48	1.00
3899--4081	91	2.0	91	98	0	357	30	22	13	32	1.93
10362--10725	181	2.0	181	95	0	656	24	19	16	39	1.91
12296--12412	47	2.5	46	80	5	126	47	22	11	18	1.81
13008--13032	8	3.1	8	100	0	50	48	0	0	52	1.00
17521--17551	2	15.5	2	100	0	62	51	48	0	0	1.00
20752--20869	59	2.0	60	91	5	195	25	17	11	44	1.83
20749--20937	59	3.2	57	83	4	180	25	16	13	44	1.84
21140--21202	29	2.1	30	82	8	74	46	12	15	25	1.82
21525--21566	2	21.0	2	100	0	84	50	0	0	50	1.00
24704--24735	13	2.5	13	100	0	64	31	34	0	34	1.58
28311--28413	51	2.0	50	94	1	179	32	2	7	57	1.42
28322--28432	51	2.2	50	79	12	129	32	4	8	54	1.50
29841--29949	54	2.0	54	85	0	146	31	8	22	38	1.83
33828--33874	20	2.2	22	82	14	55	53	2	10	34	1.48
35693--35743	21	2.4	21	80	6	59	29	7	23	39	1.83
36177--36302	38	3.3	38	80	4	103	51	3	6	38	1.46
36229--36314	20	4.4	20	72	21	76	54	2	4	38	1.34
36215--36282	2	35.5	2	76	8	52	50	1	5	42	1.35
36220--36319	14	6.9	14	71	15	53	54	2	6	38	1.37
36546--36574	13	2.1	14	93	6	51	20	0	55	24	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38328--38448	41	3.0	42	74	7	142	14	20	33	31	1.93
43715--43758	18	2.3	19	84	7	54	13	20	40	25	1.89
44331--44359	13	2.1	14	93	6	51	75	0	6	17	1.01
46053--46079	12	2.2	12	100	0	54	25	0	25	48	1.52
47884--47957	20	3.8	20	81	3	96	10	32	25	31	1.90
47882--47958	39	2.0	39	92	0	127	11	31	24	32	1.91
47996--48068	20	3.7	19	75	8	74	12	21	19	46	1.82
48002--48078	40	1.9	40	86	0	109	12	24	19	42	1.86
50508--50868	192	1.9	192	89	3	566	22	18	17	40	1.91
50810--50930	64	1.9	65	89	1	190	16	19	13	51	1.76
55803--55848	17	2.5	20	75	17	53	41	13	17	28	1.86
77216--77272	17	3.4	17	71	9	53	26	17	5	50	1.67
87079--87116	10	3.8	10	92	0	67	21	18	28	31	1.97
87533--87597	29	2.2	30	81	8	80	29	4	6	60	1.41
94103--94168	32	2.1	32	97	0	123	30	12	25	31	1.92
96061--96177	49	2.4	49	82	2	137	42	17	23	15	1.88
96093--96426	49	6.8	49	74	5	165	41	17	22	18	1.90
96336--96449	50	2.3	49	84	3	138	43	22	17	15	1.87
96589--96898	161	1.9	162	89	0	487	31	29	16	22	1.96
96589--96909	81	4.0	81	90	1	482	32	28	16	22	1.96
104152--104261	26	4.2	26	68	4	87	22	13	23	40	1.90
104906--105047	30	4.8	29	76	7	135	40	19	3	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104906--105080	30	5.9	29	72	11	115	39	18	5	36	1.73
104906--105080	60	2.9	60	80	9	196	39	18	5	36	1.73
105100--105176	31	2.6	30	80	12	79	24	2	6	66	1.28
107645--107718	36	2.1	36	100	0	148	37	10	18	32	1.86
110026--110064	20	1.9	21	84	5	53	28	15	2	53	1.55
110575--110994	49	8.6	49	74	3	229	36	16	27	19	1.93
110573--110980	98	4.2	97	76	4	381	35	16	27	19	1.94
110703--110980	147	1.9	147	80	3	326	35	17	26	19	1.94
110573--110997	196	2.2	195	86	1	573	35	16	27	19	1.94
112229--112289	23	2.7	23	80	10	72	42	21	22	13	1.87
112353--112400	24	1.9	26	84	16	66	31	22	0	45	1.53
119196--119271	23	3.4	22	92	3	116	32	30	26	10	1.90
119260--119344	23	3.7	24	76	7	61	45	18	22	12	1.83
119403--119450	24	1.9	26	84	16	66	31	22	0	45	1.53
119871--119918	24	1.9	26	84	16	66	31	22	0	45	1.53
123241--123282	20	2.1	20	100	0	84	40	9	9	40	1.70
125925--125960	18	2.0	18	94	0	63	33	19	13	33	1.91
127721--127879	28	5.6	28	81	10	166	57	3	18	20	1.53
127721--127880	56	2.8	56	85	8	218	58	3	18	20	1.53
131035--131076	18	2.3	19	87	4	59	23	0	2	73	0.94
136308--136344	2	18.5	2	94	0	65	0	51	0	48	1.00
137290--137335	25	1.9	23	86	8	65	36	4	4	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138404--138446	18	2.3	19	88	8	61	23	2	2	72	1.08
138435--138465	13	2.5	12	90	10	53	29	3	0	67	1.06
148448--148740	59	5.0	58	86	3	372	33	2	28	35	1.70
148447--148740	118	2.5	118	87	3	423	34	2	28	35	1.70
148411--148740	29	11.2	29	79	11	314	33	2	28	35	1.72
149732--149787	21	2.6	21	83	10	69	41	3	0	55	1.17
150819--151042	51	4.4	51	81	5	247	35	15	19	29	1.93
150819--151042	102	2.2	104	84	4	285	35	15	19	29	1.93
151010--151484	261	1.8	262	95	0	871	29	15	19	36	1.92
154418--154452	3	11.7	3	100	0	70	31	0	0	68	0.90
157475--157505	6	5.2	6	96	0	53	51	48	0	0	1.00
164383--164442	29	2.1	29	87	0	93	46	13	11	28	1.78
167205--167243	20	1.9	20	84	5	51	43	7	2	46	1.46
167481--167533	16	3.3	16	80	17	65	52	0	0	47	1.00
167481--167530	15	3.3	16	79	17	54	52	0	0	48	1.00
171991--172081	17	5.2	17	82	7	112	41	0	4	53	1.21
171991--172081	35	2.6	34	86	6	112	41	0	4	53	1.21
172023--172081	6	10.2	6	78	7	68	44	0	3	52	1.17
172023--172114	17	5.6	17	75	17	70	45	1	3	50	1.25
172072--172114	18	2.4	18	88	3	61	46	2	2	48	1.27
173945--174085	29	4.8	28	79	11	133	36	29	1	31	1.66
173941--174085	58	2.5	58	82	12	181	35	31	1	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174099--174162	29	2.2	29	86	5	85	34	32	10	21	1.89
174115--174172	29	2.0	30	89	3	91	29	29	13	27	1.94
196841--198019	218	5.4	218	92	0	1894	34	21	21	22	1.97
198504--198577	17	4.2	17	77	10	78	41	0	5	52	1.24
198504--198573	35	1.9	36	86	11	99	42	0	5	51	1.25
198536--198577	6	7.2	6	78	5	50	45	0	4	50	1.23
198504--198608	47	2.3	47	81	8	117	43	0	4	50	1.29
198568--198610	18	2.4	18	88	3	61	46	2	2	48	1.27
200697--200770	17	4.2	17	77	10	78	41	0	5	52	1.24
200697--200766	35	1.9	36	86	11	99	42	0	5	51	1.25
200729--200770	6	7.2	6	78	5	50	45	0	4	50	1.23
200697--200801	47	2.3	47	81	8	117	43	0	4	50	1.29
200761--200803	18	2.4	18	88	3	61	46	2	2	48	1.27
202679--202945	60	4.5	59	85	4	324	35	30	2	31	1.71
202679--202940	29	8.8	29	81	7	276	36	29	2	31	1.72

Tables:   1

The End!