genome.fa.s12032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012032.1 Kokia drynarioides strain JFW-HI SEQ_127030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175145

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3992--4181	60	3.2	59	85	7	233	47	12	14	25	1.79
8398--8437	21	1.9	21	84	0	53	57	5	10	27	1.52
8394--8525	57	2.4	56	82	3	142	52	7	5	34	1.53
9401--9455	25	2.2	25	96	0	101	43	10	29	16	1.82
13605--13645	20	2.0	20	90	0	64	29	0	0	70	0.87
15371--15479	30	3.7	29	72	10	87	39	6	16	37	1.74
16342--16425	19	4.3	19	71	15	64	21	20	21	36	1.95
16385--16428	13	3.3	13	87	3	61	20	20	15	43	1.88
29985--30029	21	2.1	21	91	0	72	26	15	11	46	1.79
41139--41351	46	4.6	46	77	0	219	31	23	16	28	1.96
47648--47964	158	2.0	158	86	0	436	29	25	23	21	1.99
50391--50744	196	1.8	193	80	6	428	26	25	17	29	1.97
56427--56535	24	4.5	24	96	0	191	27	23	23	24	2.00
56517--56620	27	3.8	27	88	1	145	37	25	13	23	1.91
64291--64330	21	2.0	21	90	5	64	45	15	15	25	1.84
64327--64351	13	1.9	13	100	0	50	48	12	16	24	1.79
65089--65159	35	2.0	35	100	0	142	25	28	14	32	1.94
68495--68546	23	2.3	23	93	0	86	19	21	23	36	1.95
74138--74285	43	3.5	43	76	2	113	37	11	24	27	1.90
74203--74283	41	2.0	42	82	2	101	39	12	22	25	1.89
75601--75679	40	2.0	41	82	7	99	39	10	24	26	1.87
76234--76293	24	2.5	24	91	0	93	16	10	26	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76276--76333	21	2.8	21	86	0	80	29	8	22	39	1.84
84648--84705	24	2.4	24	88	8	82	29	24	17	29	1.97
84652--84722	24	3.0	24	82	0	79	28	21	21	29	1.98
94291--94346	3	18.7	3	78	14	53	66	0	30	3	1.09
94292--94348	24	2.5	23	83	8	73	64	0	29	5	1.15
113586--113667	34	2.4	34	89	4	121	41	15	15	26	1.88
114136--114209	36	2.1	36	92	2	123	36	13	9	40	1.77
117947--117989	17	2.5	17	80	0	50	58	13	11	16	1.64
126195--126278	37	2.3	37	85	0	105	26	29	20	23	1.99
130277--130328	26	2.0	26	92	0	86	26	19	25	28	1.98
132889--132931	22	2.0	21	86	9	59	46	4	6	41	1.51
136157--136201	2	22.5	2	86	0	63	48	2	4	44	1.35
137136--137260	54	2.3	54	84	0	151	24	22	24	28	1.99
138695--138747	22	2.5	22	85	11	60	37	15	16	30	1.90
139331--139409	37	2.1	37	90	0	122	48	13	6	31	1.68
143658--143942	24	11.9	24	76	3	187	22	24	13	39	1.90
143658--143938	48	5.9	48	80	0	285	22	24	13	39	1.90
143900--143950	22	2.2	24	86	6	70	29	25	7	37	1.84
149723--149778	17	2.9	20	82	15	57	35	14	0	50	1.43
153599--154049	24	18.8	24	79	0	409	21	26	17	34	1.95
154695--154733	18	2.2	18	85	0	51	43	15	2	38	1.60
159026--159058	11	2.8	12	90	9	50	0	27	3	69	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163582--163612	14	2.2	14	94	0	53	22	12	9	54	1.67
163728--163828	26	3.9	26	94	0	166	24	13	25	35	1.93
168234--168304	29	2.4	29	95	0	124	47	2	22	26	1.65
170410--170576	36	4.6	36	76	9	160	35	24	18	20	1.95
170481--170616	40	3.5	40	78	8	145	38	25	16	19	1.93
170442--170616	76	2.3	76	84	0	215	37	25	17	20	1.93
171999--172066	29	2.3	29	85	5	84	29	4	27	38	1.76
172663--172708	17	2.8	15	81	18	56	26	8	19	45	1.79

Tables:   1

The End!