genome.fa.s12035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012035.1 Kokia drynarioides strain JFW-HI SEQ_127033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69781

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204--271	10	7.0	10	70	12	52	32	1	1	64	1.11
6357--6392	18	2.0	18	94	0	63	13	11	11	63	1.51
7249--7285	2	18.5	2	100	0	74	48	0	0	51	1.00
7822--7870	19	2.6	18	83	9	53	61	0	10	28	1.29
9914--9957	23	1.9	23	81	9	54	72	4	2	20	1.13
19682--19725	19	2.2	20	92	8	81	38	9	4	47	1.56
19906--19962	7	8.0	7	82	2	69	52	40	0	7	1.28
19929--19989	14	4.5	13	80	10	52	54	37	0	8	1.31
20062--20146	21	4.1	20	71	11	73	48	23	0	28	1.51
20026--20127	35	2.9	34	78	10	91	48	23	0	27	1.58
20087--20147	28	2.2	28	82	5	79	49	21	0	29	1.50
20109--20195	21	4.2	21	78	11	81	51	19	0	28	1.47
20115--20217	35	2.9	35	75	16	97	52	18	0	29	1.46
20151--20499	28	12.5	28	70	15	161	51	22	0	25	1.52
20025--20260	63	3.9	63	73	11	163	50	22	0	26	1.52
20199--20293	21	4.6	21	87	7	115	51	22	0	26	1.48
20207--20383	7	25.6	7	70	4	99	51	23	0	24	1.49
20277--20392	21	5.2	21	76	15	117	51	23	0	25	1.48
20256--20439	97	1.9	97	81	6	221	50	23	0	25	1.54
20227--20538	49	6.2	48	70	16	186	51	22	0	25	1.54
20477--20581	42	2.5	42	84	3	122	56	20	0	22	1.48
20200--20581	21	18.2	20	69	18	108	52	22	0	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20477--20596	42	2.9	42	80	7	120	54	22	0	22	1.51
20568--20632	14	4.6	14	77	7	60	46	38	0	15	1.46
23759--23986	117	1.9	117	95	0	411	29	16	20	32	1.95
26003--26040	17	2.2	17	95	0	67	50	2	10	36	1.51
28098--28167	27	2.7	26	89	10	92	47	8	12	31	1.72
28113--28167	27	2.0	27	100	0	110	47	10	12	29	1.76
28140--28782	330	1.9	330	93	0	1097	29	15	13	41	1.85
29862--29909	12	3.9	12	83	2	51	81	4	12	2	0.93
29874--29914	21	1.9	22	85	5	57	80	7	12	0	0.90
34182--34229	12	3.9	12	83	2	51	81	4	12	2	0.93
34194--34234	21	1.9	22	85	5	57	80	7	12	0	0.90
37890--37925	19	1.9	18	88	5	54	33	0	0	66	0.92
42982--43052	24	2.9	26	74	17	64	38	1	0	60	1.06
44151--44213	27	2.3	26	82	12	74	36	6	17	39	1.75
44171--44208	20	1.9	20	88	0	58	39	7	13	39	1.73
44282--44326	14	3.2	14	80	0	63	17	0	28	53	1.44
44266--44326	28	2.2	28	91	2	97	19	0	31	49	1.49
44654--44761	6	18.7	6	73	11	91	45	2	1	50	1.27
44675--44759	17	4.9	17	84	7	109	42	2	2	52	1.27
44640--44725	41	2.1	41	88	0	127	40	3	1	54	1.25
44659--44759	35	2.9	35	83	4	116	42	2	1	52	1.28
45459--45498	18	2.2	18	86	0	53	47	7	10	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46735--47030	29	10.2	29	70	12	164	34	23	3	37	1.73
46632--47006	59	6.4	59	80	6	304	35	23	2	38	1.69
46637--46974	30	11.4	30	73	11	164	35	23	2	38	1.68
67538--67586	21	2.5	20	81	15	57	65	2	2	30	1.15

Tables:   1

The End!