genome.fa.s12059.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012059.1 Kokia drynarioides strain JFW-HI SEQ_127057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132307

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288--722	59	7.3	59	78	9	370	36	5	25	31	1.80
318--422	28	3.6	28	69	13	86	33	5	27	33	1.81
288--722	30	14.6	29	66	21	122	36	5	25	31	1.80
317--657	120	2.8	118	83	8	415	36	5	25	32	1.80
578--724	29	5.0	31	78	16	161	39	4	25	30	1.76
578--757	59	3.0	59	85	5	195	40	3	25	31	1.74
1861--1901	21	2.0	21	90	9	66	51	0	0	48	1.00
1886--1910	3	8.3	3	100	0	50	36	0	0	64	0.94
2606--2680	17	4.4	17	86	3	105	54	2	0	42	1.14
2606--2680	6	13.0	6	71	13	59	54	2	0	42	1.14
2625--2682	11	5.1	11	79	10	55	58	3	0	37	1.15
12314--12372	23	2.6	23	83	5	75	11	27	16	44	1.83
18785--18826	21	2.0	21	85	4	57	66	2	4	26	1.23
19873--19905	18	1.9	17	88	11	50	54	0	12	33	1.37
20110--20148	17	2.2	18	90	4	62	61	10	5	23	1.48
20029--20206	90	2.0	90	84	4	234	47	11	6	34	1.66
22519--22716	98	2.0	98	96	0	360	29	21	13	35	1.92
23212--23249	19	2.0	19	89	0	58	36	10	15	36	1.82
26190--26219	3	9.7	3	92	7	51	63	0	33	3	1.11
28319--28370	28	1.9	26	84	7	68	53	5	0	40	1.25
37111--37179	36	1.9	36	90	0	111	52	26	10	11	1.69
38184--38283	42	2.4	42	96	1	182	36	6	4	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39754--39783	10	2.8	11	90	10	53	83	0	6	10	0.81
47054--47126	31	2.4	31	83	4	85	49	5	19	26	1.69
47234--47317	22	3.9	21	78	7	87	7	2	19	71	1.20
47252--47340	12	7.8	12	70	20	57	7	2	19	70	1.22
47322--47367	15	3.1	16	78	15	53	8	4	17	69	1.31
48073--48118	19	2.4	19	76	20	51	28	4	4	63	1.33
67088--67166	29	2.6	28	78	13	77	43	2	6	48	1.42
74538--74569	15	2.1	15	94	0	55	31	6	0	62	1.20
85162--85222	25	2.3	26	78	21	65	62	3	0	34	1.12
85176--85225	25	2.0	25	88	0	73	62	4	0	34	1.14
86793--86832	21	1.9	21	84	0	53	42	0	0	57	0.98
88330--88354	4	6.2	4	100	0	50	52	0	0	48	1.00
90890--90930	21	1.9	22	90	5	66	51	0	0	48	1.00
97928--97982	21	2.7	20	74	20	60	52	0	0	47	1.00
102049--102081	15	2.1	17	88	11	52	36	6	39	18	1.75
104678--104737	25	2.4	25	82	2	66	51	3	1	43	1.28
104762--104786	4	6.2	4	100	0	50	24	0	0	76	0.80
115969--116014	23	2.0	23	86	0	65	45	15	10	28	1.79
116130--116176	12	4.0	12	83	5	69	48	12	19	19	1.80
116928--116977	13	3.8	13	89	2	64	40	12	6	42	1.67
127305--127487	94	1.9	95	90	3	289	30	16	16	36	1.91
127400--127990	59	9.9	58	75	8	419	26	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127400--127990	61	9.9	61	76	10	476	26	19	17	36	1.94
127407--127990	120	4.9	123	80	7	415	27	19	17	36	1.94
131705--131753	12	3.8	12	78	19	53	51	0	8	40	1.32
131761--131813	22	2.4	21	75	9	52	47	1	3	47	1.31
131867--132145	84	3.3	83	87	5	380	41	5	4	48	1.44
132016--132183	39	4.1	38	74	18	176	42	1	2	53	1.21
131867--132152	86	3.4	86	88	4	379	41	4	4	48	1.44
132103--132194	39	2.4	39	92	5	143	42	2	0	55	1.12
132142--132303	86	1.9	85	92	3	274	41	1	4	51	1.34
132016--132273	122	2.1	123	91	4	421	43	1	3	52	1.24

Tables:   1

The End!