genome.fa.s12062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012062.1 Kokia drynarioides strain JFW-HI SEQ_127060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  258703

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7246--7431	93	2.0	93	84	8	247	46	15	6	31	1.72
7533--7591	23	2.8	20	77	20	59	72	1	1	23	1.02
7548--7590	23	1.9	23	90	4	70	69	2	0	27	1.00
7681--7739	19	3.1	18	75	18	57	64	1	5	28	1.24
12249--12296	21	2.3	20	78	3	51	20	2	4	72	1.11
12308--12340	15	2.3	15	89	5	50	21	6	9	63	1.45
15357--15937	147	3.9	148	86	3	787	42	2	10	44	1.53
15319--15972	147	4.4	147	84	6	766	42	3	10	43	1.54
26236--26285	12	3.8	13	75	17	50	64	2	34	0	1.05
26242--26300	27	2.2	27	81	6	66	67	1	30	0	1.00
27363--27396	11	3.1	11	95	0	59	76	0	23	0	0.79
27353--27402	17	2.9	17	79	8	57	78	2	20	0	0.86
27353--27403	11	4.5	11	87	5	57	78	1	19	0	0.85
27353--27403	6	8.8	6	76	8	52	78	1	19	0	0.85
27743--27785	20	2.2	20	83	8	52	23	16	11	48	1.78
32531--32807	50	5.5	50	69	16	187	34	19	18	28	1.95
32530--32807	101	2.8	101	85	6	375	34	19	17	28	1.95
34345--34465	13	9.5	13	70	10	72	20	6	4	68	1.29
39731--39779	21	2.2	21	78	7	53	36	20	2	40	1.64
48320--48352	17	1.9	17	88	11	50	72	3	6	18	1.18
50099--50141	21	2.0	21	86	8	61	9	13	6	69	1.35
54550--54593	18	2.3	19	80	15	54	11	27	9	52	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54557--54593	18	2.0	19	89	5	58	13	24	10	51	1.73
70432--70470	17	2.3	17	86	0	51	23	15	12	48	1.79
106173--106217	15	3.3	15	70	23	53	68	4	8	17	1.32
106163--106217	26	2.1	26	100	0	110	70	3	10	14	1.28
114968--115020	3	17.3	3	96	3	97	66	0	0	33	0.92
117198--117238	16	2.9	14	83	16	57	75	2	9	12	1.13
118910--118994	5	15.4	5	73	26	66	72	0	5	21	1.05
118921--118988	23	3.0	23	80	18	63	72	0	5	22	1.06
118908--119014	10	10.6	9	70	25	56	71	0	6	21	1.15
118910--119030	39	3.1	38	81	9	129	71	0	6	20	1.13
120048--120088	15	2.6	16	81	11	50	2	9	7	80	0.99
121626--121990	132	2.8	130	91	4	580	37	4	17	40	1.69
122324--122518	82	2.4	81	88	1	282	23	20	26	30	1.98
122484--122723	102	2.4	102	85	1	320	24	26	23	25	2.00
122595--122660	35	1.9	33	85	11	89	22	27	24	25	2.00
133313--133374	14	4.6	14	74	22	60	46	0	1	51	1.10
133313--133364	26	2.0	25	92	3	86	50	0	0	50	1.00
133460--133529	25	2.7	26	75	6	70	50	0	7	42	1.30
138531--138583	21	2.5	21	72	6	54	30	11	26	32	1.91
163181--163226	21	2.1	22	84	11	60	10	15	8	65	1.47
172484--172509	10	2.6	10	100	0	52	19	19	19	42	1.90
180002--180099	51	1.9	51	85	0	133	38	12	19	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182603--182811	90	2.3	90	84	1	267	27	24	19	27	1.99
188017--188053	19	1.9	19	100	0	74	18	21	16	43	1.88
192795--192848	21	2.6	21	75	0	54	25	27	9	37	1.87
197255--197317	24	2.6	24	92	0	99	20	20	33	25	1.97
201483--201581	24	4.1	24	85	0	117	29	19	23	28	1.98
202640--202771	55	2.4	55	81	5	158	27	18	25	28	1.98
203918--203951	17	2.0	17	94	0	59	52	8	17	20	1.71
209137--209277	55	2.6	55	84	0	201	24	16	29	29	1.96
216774--216803	14	2.2	14	94	5	53	43	10	16	30	1.81
219142--219181	17	2.4	17	82	0	53	52	12	15	20	1.74
221299--221331	14	2.4	14	95	5	59	45	9	18	27	1.79
230194--230223	15	2.0	15	93	0	51	13	30	13	43	1.82
233431--233484	21	2.6	20	80	8	54	7	5	7	79	1.05
234239--234283	23	1.9	24	86	13	67	46	0	46	6	1.29
236150--236180	7	4.4	7	95	0	53	16	9	25	48	1.76
240978--241032	27	2.0	27	100	0	110	14	10	21	52	1.72
243705--243775	3	23.7	3	89	0	106	1	38	0	60	1.06
244662--244710	26	1.9	25	88	12	73	59	6	2	32	1.34
246537--246575	21	1.9	21	94	5	71	66	10	12	10	1.44
252116--252149	10	3.4	10	91	0	59	0	11	0	88	0.52
255221--255246	12	2.2	12	100	0	52	23	15	11	50	1.76
256506--256532	13	2.1	13	100	0	54	14	7	7	70	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257309--257355	13	3.7	13	81	13	62	21	4	8	65	1.37
257304--257355	26	2.0	26	100	0	104	23	3	7	65	1.35
257309--257356	12	3.9	12	78	21	55	20	6	8	64	1.43

Tables:   1

The End!