Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012064.1 Kokia drynarioides strain JFW-HI SEQ_127062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91571
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Warning! 450 characters in sequence are not A, C, G, or T
Found at i:783 original size:11 final size:11
Alignment explanation
Indices: 747--782 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
737 TTATATTTAA
747 AAAATAATTTT
1 AAAATAATTTT
*
758 AAATTAATTTT
1 AAAATAATTTT
769 AAAAT-ATTTT
1 AAAATAATTTT
779 AAAA
1 AAAA
783 AAAATTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AAAATAATTTT
Found at i:2953 original size:7 final size:7
Alignment explanation
Indices: 2941--2965 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2931 GAATAACCCT
2941 CTAAACA
1 CTAAACA
2948 CTAAACA
1 CTAAACA
2955 CTAAACA
1 CTAAACA
2962 CTAA
1 CTAA
2966 CTTTGAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAAACA
Found at i:10538 original size:7 final size:7
Alignment explanation
Indices: 10526--10555 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
10516 AATAAACACA
10526 CACCCAT
1 CACCCAT
10533 CACCCAT
1 CACCCAT
10540 CACCCAT
1 CACCCAT
10547 CACCCAT
1 CACCCAT
10554 CA
1 CA
10556 GGAATTGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.57, G:0.00, T:0.13
Consensus pattern (7 bp):
CACCCAT
Found at i:13355 original size:3 final size:3
Alignment explanation
Indices: 13347--13375 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
13337 ATACTTTTCA
13347 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
13376 CCACTCCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14919 original size:18 final size:18
Alignment explanation
Indices: 14896--14937 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
14886 ACAATATTTC
14896 ACAACTTGATAAACTATA
1 ACAACTTGATAAACTATA
14914 ACAACTTGATAAACTATA
1 ACAACTTGATAAACTATA
14932 ACAACT
1 ACAACT
14938 GTAGGATGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.19, G:0.05, T:0.26
Consensus pattern (18 bp):
ACAACTTGATAAACTATA
Found at i:27627 original size:24 final size:22
Alignment explanation
Indices: 27584--27629 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
27574 ATCCGTCTTT
*
27584 CCTAAGATAAAAAATAAATAAG
1 CCTAAGATAAAAAAAAAATAAG
*
27606 CCTAAGGTAAGAAAAAAGAATAAG
1 CCTAAGATAA-AAAAAA-AATAAG
27630 TTAAGCGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 5 0.25
24 6 0.30
ACGTcount: A:0.61, C:0.09, G:0.15, T:0.15
Consensus pattern (22 bp):
CCTAAGATAAAAAAAAAATAAG
Found at i:34792 original size:24 final size:23
Alignment explanation
Indices: 34751--34797 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
34741 TTATTTTATG
34751 CTATTTATTTTTACTTCGACTTCT
1 CTATTTATTTTTACTTCGA-TTCT
*
34775 CTATTT-TTTTTTCTTTCGATTCT
1 CTATTTATTTTTAC-TTCGATTCT
34798 ATTTTCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.13, C:0.19, G:0.04, T:0.64
Consensus pattern (23 bp):
CTATTTATTTTTACTTCGATTCT
Found at i:40803 original size:19 final size:19
Alignment explanation
Indices: 40781--40825 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
40771 TTATATTAGG
40781 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
40800 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
40819 ATTTAAT
1 ATTTAAT
40826 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:41696 original size:26 final size:21
Alignment explanation
Indices: 41637--41687 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
41627 CTATTTTCTA
*
41637 TTTTA-TTTCAATTCTGTTTC
1 TTTTATTTTTAATTCTGTTTC
41657 TTTTATTTTTAATTCTGTTTC
1 TTTTATTTTTAATTCTGTTTC
41678 TTTTATTTTT
1 TTTTATTTTT
41688 CCTCAAATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.14, C:0.10, G:0.04, T:0.73
Consensus pattern (21 bp):
TTTTATTTTTAATTCTGTTTC
Found at i:43638 original size:19 final size:19
Alignment explanation
Indices: 43616--43660 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
43606 TTATATTAGG
43616 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
43635 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
43654 ATTTAAT
1 ATTTAAT
43661 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:44508 original size:20 final size:20
Alignment explanation
Indices: 44466--44518 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
44456 ACTTCCCTAT
* *
44466 TTTCTATTTCTTTCAATTCTG
1 TTTCT-TTTATTTCAATTATG
44487 TTT-TTTTATTTCTAATTATG
1 TTTCTTTTATTTC-AATTATG
44507 TTTCTTTTATTT
1 TTTCTTTTATTT
44519 TTCCTCAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 7 0.25
20 10 0.36
21 11 0.39
ACGTcount: A:0.15, C:0.11, G:0.04, T:0.70
Consensus pattern (20 bp):
TTTCTTTTATTTCAATTATG
Found at i:54224 original size:29 final size:28
Alignment explanation
Indices: 54182--54376 Score: 96
Period size: 29 Copynumber: 6.6 Consensus size: 28
54172 CATTAGGAGG
54182 CAAAATGGTAATTTTGGAAAAATCAGGGT
1 CAAAATGG-AATTTTGGAAAAATCAGGGT
*** *
54211 CAAAAATGGAATTTTTGG-AGGTTCGGGGGT
1 C-AAAATGGAA-TTTTGGAAAAATC-AGGGT
**
54241 -AAAATGGTAATTTTTGGAAAAAAAATGGGGTT
1 CAAAATGG-AA-TTTTGGAAAAATCA--GGG-T
* * ** *
54273 AAAAATGGAATTTT-TAGAAGTTCGGGGGT
1 CAAAATGGAATTTTGGA-AAAATC-AGGGT
54302 -AAAATGGTAATTTTTGGAAAAAT-AGGGT
1 CAAAATGG-AA-TTTTGGAAAAATCAGGGT
**
54330 CAAAATGGAATTTTGGAAAGTTC-GAGGT
1 CAAAATGGAATTTTGGAAAAATCAG-GGT
54358 CAAAAATGGAATTTTGGAA
1 C-AAAATGGAATTTTGGAA
54377 TAGTTCAGGG
Statistics
Matches: 126, Mismatches: 22, Indels: 36
0.68 0.12 0.20
Matches are distributed among these distances:
27 11 0.09
28 24 0.19
29 42 0.33
30 29 0.23
31 10 0.08
32 3 0.02
33 7 0.06
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (28 bp):
CAAAATGGAATTTTGGAAAAATCAGGGT
Found at i:54254 original size:28 final size:28
Alignment explanation
Indices: 54155--54394 Score: 93
Period size: 29 Copynumber: 8.2 Consensus size: 28
54145 CCCGATGGGC
* * * *
54155 AAAATGGTAATTTTGGACATTAGGAGGC
1 AAAATGGTAATTTTGGAAATTCGGGGGT
* *
54183 AAAATGGTAATTTTGGAAAAATC-AGGGT
1 AAAATGGTAATTTTGG-AAATTCGGGGGT
**
54211 CAAAAATGG-AATTTTTGGAGGTTCGGGGGT
1 --AAAATGGTAA-TTTTGGAAATTCGGGGGT
* *
54241 AAAATGGTAATTTTTGGAAAAAAAAT-GGGGTT
1 AAAATGGTAA-TTTTGG----AAATTCGGGGGT
* *
54273 AAAAATGG-AATTTTTAGAAGTTCGGGGGT
1 -AAAATGGTAA-TTTTGGAAATTCGGGGGT
* *
54302 AAAATGGTAATTTTTGGAAAAAT--AGGGT
1 AAAATGGTAA-TTTTGG-AAATTCGGGGGT
*
54330 CAAAATGG-AATTTTGGAAAGTTC-GAGGT
1 -AAAATGGTAATTTTGGAAA-TTCGGGGGT
*
54358 CAAAAATGG-AATTTTGGAATAGTTCAGGGGTT
1 --AAAATGGTAATTTTGGAA-A-TTC-GGGGGT
54390 AAAAT
1 AAAAT
54395 ATGATTTCTG
Statistics
Matches: 163, Mismatches: 28, Indels: 40
0.71 0.12 0.17
Matches are distributed among these distances:
26 3 0.02
27 7 0.04
28 44 0.27
29 54 0.33
30 30 0.18
32 16 0.10
33 9 0.06
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (28 bp):
AAAATGGTAATTTTGGAAATTCGGGGGT
Found at i:54287 original size:61 final size:59
Alignment explanation
Indices: 54183--54343 Score: 229
Period size: 61 Copynumber: 2.7 Consensus size: 59
54173 ATTAGGAGGC
** * *
54183 AAAATGGTAA-TTTTGGAAAAATCAGGGTCAAAAATGGAATTTTTGGAGGTTCGGGGGT
1 AAAATGGTAATTTTTGGAAAAAAAAGGGTCAAAAATGGAATTTTTAGAAGTTCGGGGGT
*
54241 AAAATGGTAATTTTTGGAAAAAAAATGGGGTTAAAAATGGAATTTTTAGAAGTTCGGGGGT
1 AAAATGGTAATTTTTGGAAAAAAAA--GGGTCAAAAATGGAATTTTTAGAAGTTCGGGGGT
*
54302 AAAATGGTAATTTTTGG-AAAAATAGGGTC-AAAATGGAATTTT
1 AAAATGGTAATTTTTGGAAAAAAAAGGGTCAAAAATGGAATTTT
54344 GGAAAGTTCG
Statistics
Matches: 93, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
57 13 0.14
58 14 0.15
59 12 0.13
60 6 0.06
61 48 0.52
ACGTcount: A:0.39, C:0.03, G:0.27, T:0.31
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGAAAAAAAAGGGTCAAAAATGGAATTTTTAGAAGTTCGGGGGT
Found at i:55323 original size:3 final size:3
Alignment explanation
Indices: 55315--55345 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
55305 CGTTTCAACT
55315 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
55346 GCTGTTGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:56016 original size:6 final size:6
Alignment explanation
Indices: 55989--56070 Score: 55
Period size: 6 Copynumber: 14.2 Consensus size: 6
55979 ACTTTTATTT
* ** * *
55989 ATTTAA ATTTATA A--TAA TTTTAA ATTTAA AAATAA ACTTAA ACTTAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* * *
56036 A-TTAA ATTCAA ATCTAA A-ATAA ATTTAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA A
56071 ACAAATTTAA
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
4 1 0.02
5 11 0.18
6 46 0.77
7 2 0.03
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (6 bp):
ATTTAA
Found at i:56064 original size:34 final size:34
Alignment explanation
Indices: 56008--56098 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
55998 TATAATAATT
* **
56008 TTAAAT-TTAAAAATAAACTTAAACTTAAATTAAA
1 TTAAATCTT-AAAATAAATTTAAACTTAAAACAAA
*
56042 TTCAAATC-TAAAATAAATTTAAATTTAAAACAAA
1 TT-AAATCTTAAAATAAATTTAAACTTAAAACAAA
*
56076 TTTAATCTTAAAATAAATTTAAA
1 TTAAATCTTAAAATAAATTTAAA
56099 AGGGGTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
33 4 0.08
34 40 0.82
35 5 0.10
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (34 bp):
TTAAATCTTAAAATAAATTTAAACTTAAAACAAA
Found at i:56095 original size:17 final size:17
Alignment explanation
Indices: 56017--56097 Score: 85
Period size: 17 Copynumber: 4.8 Consensus size: 17
56007 TTTAAATTTA
* *
56017 AAAATAAACTTAAACTT
1 AAAATAAATTTAATCTT
* *
56034 AAATTAAATTCAAATC-T
1 AAAATAAATT-TAATCTT
56051 AAAATAAATTTAAAT-TT
1 AAAATAAATTT-AATCTT
*
56068 AAAACAAATTTAATCTT
1 AAAATAAATTTAATCTT
56085 AAAATAAATTTAA
1 AAAATAAATTTAA
56098 AAGGGGTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.06
17 46 0.88
18 3 0.06
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATAAATTTAATCTT
Found at i:56618 original size:49 final size:49
Alignment explanation
Indices: 56558--56806 Score: 324
Period size: 49 Copynumber: 5.1 Consensus size: 49
56548 TCCCCTTGTA
* *
56558 TCTTCGCGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATG
1 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* * * * * *
56607 TCTTTGAGGTACTAGG-TTCGCCATTGCGACTTAAACCTTTCCCTT-GTG
1 TCTTCGTGGTACT-GGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* * *
56655 TCTTTGTGGTAATGGATTCGCCGTTGAGGCTTAAATCTTTCCCTTCATG
1 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* *
56704 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATATTTCCCTTTATG
1 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
* * *
56753 TCTTCGTGGTACTGGATTCACCCTTGTGGCTTAAATCTTTCCCTTCATG
1 TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
56802 T-TTCG
1 TCTTCG
56807 CGATACTAAA
Statistics
Matches: 173, Mismatches: 24, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
47 2 0.01
48 42 0.24
49 127 0.73
50 2 0.01
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.40
Consensus pattern (49 bp):
TCTTCGTGGTACTGGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG
Found at i:56687 original size:97 final size:97
Alignment explanation
Indices: 56467--56802 Score: 383
Period size: 97 Copynumber: 3.5 Consensus size: 97
56457 TCAATCCGCA
** * * * ** *
56467 TGGTACTAAATTCGCTGTTGCGGCTTAAA-ATTTCTTTTCATG-CTTCTGAGGTA-TAAGGTTCA
1 TGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGTCTT-TGAGGTACT-AGGTTCG
* * *
56529 CCTTTGTGACTTAAACCTTTCCCCTTGTATCTTCG
64 CCATTGCGACTTAAACCTTT-CCCTTGTGTCTTCG
*
56564 CGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGTCTTTGAGGTACTAGGTTCGCC
1 TGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGTCTTTGAGGTACTAGGTTCGCC
*
56629 ATTGCGACTTAAACCTTTCCCTTGTGTCTTTG
66 ATTGCGACTTAAACCTTTCCCTTGTGTCTTCG
* * * *
56661 TGGTAATGGATTCGCCGTTGAGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTACT-GGATTCGC
1 TGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGTCTTTGAGGTACTAGG-TTCGC
* * ** *
56725 CGTTGCGGCTTAAATATTTCCCTTTATGTCTTCG
65 CATTGCGACTTAAACCTTTCCC-TTGTGTCTTCG
* *
56759 TGGTACTGGATTCACCCTTGTGGCTTAAATCTTTCCCTTCATGT
1 TGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGT
56803 TTCGCGATAC
Statistics
Matches: 206, Mismatches: 28, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
96 2 0.01
97 110 0.53
98 90 0.44
99 4 0.02
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.40
Consensus pattern (97 bp):
TGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCCTTCATGTCTTTGAGGTACTAGGTTCGCC
ATTGCGACTTAAACCTTTCCCTTGTGTCTTCG
Found at i:61455 original size:100 final size:100
Alignment explanation
Indices: 61248--62135 Score: 455
Period size: 99 Copynumber: 9.1 Consensus size: 100
61238 ACAGGTCTCG
* * ** *
61248 GTACCAC-GAAACATAAAGGGAAAGATCTAAG-TCATAACGGCAGATCCAGAACCATAAAGATTT
1 GTACCACAGAAACATGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCATAAAGATTT
*
61311 AAAGGGAAGGGTTTAAGTCGCAATGGCGAA-CTTA
66 AAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
* * *
61345 GTACCTCAGAAGACATGAAGGGAAAAGATCTAAG-CCGCAACGGCGGATCCAGTACCACAAAGAT
1 GTACCACAGAA-ACATGAAGGG-AAAGATCTAAGACCGCAACGGCAGATCCAGTACCATAAAGAT
** * * **
61409 ACAAAGGGAAGGGTTTAAGTCACAACGGTAAACCCTA
64 TTAAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
* * * * *
61446 -TACCACAGAAACA-CAATGGGAAAGATCTAAGACTGTAATGGCAGATCCAGTACCGTAAAGATT
1 GTACCACAGAAACATGAA-GGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCATAAAGATT
* *
61509 TAAAGAGAAAGGTTTAAGTCGCAATGGCGAACCC-A
65 TAAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
* * * ** *
61544 GTACCTCAGAAACACGAAGGGAAAGATCTAAGACCGCAACGACAGATTTAGTACCGTAAAGATTT
1 GTACCACAGAAACATGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCATAAAGATTT
* *
61609 -AA---AAGGG---AA--AG--ATGGCGAA-CCTT
66 AAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
* *** * * ** *
61632 GTACCACAAAAACATGACCAGAAAGATCTAAGACTGCAACGGTAGATTTAGTACAGCA-AAA-CT
1 GTACCACAGAAACATGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTAC--CATAAAGAT
** * * *
61695 ACAAAAGGGAAAGGTTTAAGTCGCAATGACGAA-CCTT
64 -TTAAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
* * * * * * *
61732 GTACCATAGAGACATAAAGGGAAAGATCTAAG-CCACAACAG-AGGATCTAGTACCGTAAAGATA
1 GTACCACAGAAACATGAAGGGAAAGATCTAAGACCGCAACGGCA-GATCCAGTACCATAAAGAT-
* * * * * * * *
61795 TAAAAAGGAAAGGTCTAAGTCGTAACGGCGGACCGT-
64 TTAAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
*** ** * * ** * **
61831 GTACCTTGGAAGACACAAAGGGAAAGATTTAAG-CCGCAACGGCAAATCCAGTACCACGAGGACA
1 GTACCACAGAA-ACATGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCATAAAGATT
* * * * * * * *
61895 TAAAAGGAAAGATCTAAGCCGTAACGGCGAATCC-A
65 TAAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
* * * * * * ** * * *
61930 GCACCGTAAAGATACA-AAAGGGAAAGGTCTAAG-TCATAACGACGGAT---GTACC-TCGGAAG
1 GTACC--ACAGAAACATGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCAT--AAAG
* * * * * * * *
61989 ATGTGAAGGGAAAGATTTAAGCCGCAACGGTGAA-TCTA
62 ATTTAAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
* *
62027 GTACCAC-GAAGACATGAAGGGAAAGATCTAAG-CCGTAACGGCAGATCCAGTACCGTAAAGATT
1 GTACCACAGAA-ACATGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCATAAAGATT
* * *
62090 TAAAGGGAAAGGTTTAAGTCGAAATGGCGAACCTTA
65 TAAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
*
62126 -TACCTCAGAA
1 GTACCACAGAA
62136 GCCTGAAAAG
Statistics
Matches: 605, Mismatches: 143, Indels: 84
0.73 0.17 0.10
Matches are distributed among these distances:
87 2 0.00
88 54 0.09
89 3 0.00
90 4 0.01
92 2 0.00
93 4 0.01
94 2 0.00
95 8 0.01
96 33 0.05
97 42 0.07
98 59 0.10
99 234 0.39
100 152 0.25
101 6 0.01
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.17
Consensus pattern (100 bp):
GTACCACAGAAACATGAAGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCATAAAGATTT
AAAGGGAAGGGTTTAAGTCGCAATGGCGAACCCTA
Found at i:61568 original size:49 final size:50
Alignment explanation
Indices: 61311--61568 Score: 152
Period size: 49 Copynumber: 5.2 Consensus size: 50
61301 ATAAAGATTT
* ** *
61311 AAAGGGAAGGGTTTAAGTCGCAATGGCGAACTTAGTACCTCAGAAGACAT
1 AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCCAGTACCTCAGAAGACAC
* * * * * * * * *
61361 GAAGGGAAAAGATCTAAGCCGCAACGGCGGATCCAGTACCACA-AAGATAC
1 AAAGGG-AAAGGTTTAAGTCGCAATGGCGAACCCAGTACCTCAGAAGACAC
* * * ** *
61411 AAAGGGAAGGGTTTAAGTCACAACGGTAAACCCTA-TACCACAGAA-ACAC
1 AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCC-AGTACCTCAGAAGACAC
* * * * * * ***
61460 AATGGGAAAGATCTAAGACTGTAATGGC-AGATCCAGTACCGT-A-AAGATTT
1 AAAGGGAAAGGTTTAAGTC-GCAATGGCGA-ACCCAGTACC-TCAGAAGACAC
*
61510 AAAGAGAAAGGTTTAAGTCGCAATGGCGAACCCAGTACCTCAGAA-ACAC
1 AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCCAGTACCTCAGAAGACAC
*
61559 GAAGGGAAAG
1 AAAGGGAAAG
61569 ATCTAAGACC
Statistics
Matches: 147, Mismatches: 50, Indels: 23
0.67 0.23 0.10
Matches are distributed among these distances:
48 1 0.01
49 72 0.49
50 48 0.33
51 26 0.18
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (50 bp):
AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCCAGTACCTCAGAAGACAC
Found at i:61785 original size:49 final size:49
Alignment explanation
Indices: 61732--61921 Score: 134
Period size: 50 Copynumber: 3.8 Consensus size: 49
61722 GACGAACCTT
* * *
61732 GTACCATAGAGACATAAAGGGAAAGATCTAAGCCACAACAGAGGATCTA
1 GTACCATAGAGACATAAAAGGAAAGATCTAAGCCGCAACGGAGGATCTA
* * * * * * * *
61781 GTACCGTAAAGATATAAAAAGGAAAGGTCTAAGTCGTAACGGCGGACCGT-
1 GTACCATAGAGACAT-AAAAGGAAAGATCTAAGCCGCAACGGAGGATC-TA
* * * * * * *
61831 GTACCTTGGAAGACACAAAGGGAAAGATTTAAGCCGCAACGGCA-AATCCA
1 GTACCATAG-AGACATAAAAGGAAAGATCTAAGCCGCAACGG-AGGATCTA
* *
61881 GTACCA-CGAGGACATAAAAGGAAAGATCTAAGCCGTAACGG
1 GTACCATAGA-GACATAAAAGGAAAGATCTAAGCCGCAACGG
61922 CGAATCCAGC
Statistics
Matches: 104, Mismatches: 31, Indels: 12
0.71 0.21 0.08
Matches are distributed among these distances:
48 1 0.01
49 40 0.38
50 58 0.56
51 5 0.05
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.15
Consensus pattern (49 bp):
GTACCATAGAGACATAAAAGGAAAGATCTAAGCCGCAACGGAGGATCTA
Found at i:62050 original size:146 final size:147
Alignment explanation
Indices: 61741--62109 Score: 474
Period size: 146 Copynumber: 2.5 Consensus size: 147
61731 TGTACCATAG
** * * * * *
61741 AGACATAAAGGGAAAGATCTAAGCCACAACAGAGGATCTAGTACCGTAAAGATATAAAAAGGAAA
1 AGACATAAAGGGAAAGATCTAAGCCGTAACGGCGAATCCAGTACCGTAAAGATATAAAAGGGAAA
* * *
61806 GGTCTAAGTCGTAACGGCGGACCGTGTACCTTGGAAGACACAAAGGGAAAGATTTAAGCCGCAAC
66 GGTCTAAGTCATAACGACGGA-C-TGTACCTCGGAAGACACAAAGGGAAAGATTTAAGCCGCAAC
61871 GGCAAATCCAGTACCACGA
129 GGCAAATCCAGTACCACGA
* * * *
61890 GGACATAAAAGGAAAGATCTAAGCCGTAACGGCGAATCCAGCACCGTAAAGATACAAAAGGGAAA
1 AGACATAAAGGGAAAGATCTAAGCCGTAACGGCGAATCCAGTACCGTAAAGATATAAAAGGGAAA
****
61955 GGTCTAAGTCATAACGACGGA-TGTACCTCGGAAGATGTGAAGGGAAAGATTTAAGCCGCAACGG
66 GGTCTAAGTCATAACGACGGACTGTACCTCGGAAGACACAAAGGGAAAGATTTAAGCCGCAACGG
** *
62019 TGAATCTAGTACCACGA
131 CAAATCCAGTACCACGA
* *
62036 AGACATGAAGGGAAAGATCTAAGCCGTAACGGC-AGATCCAGTACCGTAAAGAT-TTAAAGGGAA
1 AGACATAAAGGGAAAGATCTAAGCCGTAACGGCGA-ATCCAGTACCGTAAAGATATAAAAGGGAA
*
62099 AGGTTTAAGTC
65 AGGTCTAAGTC
62110 GAAATGGCGA
Statistics
Matches: 191, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
145 19 0.10
146 99 0.52
149 73 0.38
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.16
Consensus pattern (147 bp):
AGACATAAAGGGAAAGATCTAAGCCGTAACGGCGAATCCAGTACCGTAAAGATATAAAAGGGAAA
GGTCTAAGTCATAACGACGGACTGTACCTCGGAAGACACAAAGGGAAAGATTTAAGCCGCAACGG
CAAATCCAGTACCACGA
Found at i:62096 original size:49 final size:49
Alignment explanation
Indices: 61745--62100 Score: 206
Period size: 49 Copynumber: 7.2 Consensus size: 49
61735 CCATAGAGAC
** * * *
61745 ATAAAGGGAAAGATCTAAGCCACAACAG-AGGATCTAGTACCGTAAAGAT
1 ATAAAGGGAAAGATCTAAGCCGTAACGGCA-GATCCAGTACCGTGAAGAT
* * * * * * *
61794 ATAAAAAGGAAAGGTCTAAGTCGTAACGGCGGA-CCGTGTACCTTGGAAGAC
1 AT-AAAGGGAAAGATCTAAGCCGTAACGGCAGATCC-AGTACCGT-GAAGAT
* * * * ** * *
61845 ACAAAGGGAAAGATTTAAGCCGCAACGGCAAATCCAGTACCACGAGGAC
1 ATAAAGGGAAAGATCTAAGCCGTAACGGCAGATCCAGTACCGTGAAGAT
* * *
61894 ATAAAAGGAAAGATCTAAGCCGTAACGGC-GAATCCAGCACCGTAAAGAT
1 ATAAAGGGAAAGATCTAAGCCGTAACGGCAG-ATCCAGTACCGTGAAGAT
* * * * * *
61943 ACAAAAGGGAAAGGTCTAAGTCATAACGACGGAT---GTACC-TCGGAAGAT
1 A-TAAAGGGAAAGATCTAAGCCGTAACGGCAGATCCAGTACCGT--GAAGAT
* * * * * * ** *
61991 GTGAAGGGAAAGATTTAAGCCGCAACGG-TGAATCTAGTACCACGAAGAC
1 ATAAAGGGAAAGATCTAAGCCGTAACGGCAG-ATCCAGTACCGTGAAGAT
* *
62040 ATGAAGGGAAAGATCTAAGCCGTAACGGCAGATCCAGTACCGTAAAGAT
1 ATAAAGGGAAAGATCTAAGCCGTAACGGCAGATCCAGTACCGTGAAGAT
*
62089 TTAAAGGGAAAG
1 ATAAAGGGAAAG
62101 GTTTAAGTCG
Statistics
Matches: 225, Mismatches: 66, Indels: 32
0.70 0.20 0.10
Matches are distributed among these distances:
46 2 0.01
47 25 0.11
48 5 0.02
49 99 0.44
50 86 0.38
51 8 0.04
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.15
Consensus pattern (49 bp):
ATAAAGGGAAAGATCTAAGCCGTAACGGCAGATCCAGTACCGTGAAGAT
Found at i:65766 original size:29 final size:29
Alignment explanation
Indices: 65733--65932 Score: 138
Period size: 29 Copynumber: 6.9 Consensus size: 29
65723 GTTTTTAGAG
*
65733 GTTCGAGGTCAAAAATGGAATTTTTGGACA
1 GTTCGAGGT-AAAAATGGAATTTTTGGAAA
*
65763 -TTCGAGGGT-AAAATGGTGATTTTTGGAAA
1 GTTCGA-GGTAAAAATGG-AATTTTTGGAAA
* ** *
65792 GTTCGAGATCAAAAATTTAATTTTTGTAAA
1 GTTCGAGGT-AAAAATGGAATTTTTGGAAA
* * *
65822 GTTTGAGGTTAAAATGGAATTTTTGGAAT
1 GTTCGAGGTAAAAATGGAATTTTTGGAAA
* * ** *
65851 TTTAG-GGCCAAAATGGTGATTTTTGGAAA
1 GTTCGAGGTAAAAATGG-AATTTTTGGAAA
* * * *
65880 TTTTGGGGTTAAAATGGAATTTTTGG-AA
1 GTTCGAGGTAAAAATGGAATTTTTGGAAA
* * *
65908 GTTCGTGGGAAAAATGTAATTTTTG
1 GTTCGAGGTAAAAATGGAATTTTTG
65933 TGAAGTTTGG
Statistics
Matches: 133, Mismatches: 30, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
28 37 0.28
29 57 0.43
30 34 0.26
31 5 0.04
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (29 bp):
GTTCGAGGTAAAAATGGAATTTTTGGAAA
Found at i:65804 original size:59 final size:59
Alignment explanation
Indices: 65733--65962 Score: 159
Period size: 58 Copynumber: 3.9 Consensus size: 59
65723 GTTTTTAGAG
* * *
65733 GTTCGAGGTCAAAAATGGAATTTTTGGACA-TTCGAGGGTAAAATGGTGATTTTTGGAAA
1 GTTCGAGATCAAAAATGGAATTTTTGGAAAGTTCGAGGGTAAAATGG-AATTTTTGGAAA
** * * *
65792 GTTCGAGATCAAAAATTTAATTTTTGTAAAGTTTGAGGTTAAAATGGAATTTTTGG-AA
1 GTTCGAGATCAAAAATGGAATTTTTGGAAAGTTCGAGGGTAAAATGGAATTTTTGGAAA
** ** * * * *
65850 -TTTTAGGGCCAAAATGGTGATTTTTGGAAATTTTG-GGGTTAAAATGGAATTTTTGG-AA
1 GTTCGAGATCAAAAATGG-AATTTTTGGAAAGTTCGAGGG-TAAAATGGAATTTTTGGAAA
* ** * * * *
65908 GTTCGTG-GGAAAAATGTAATTTTTGTG-AAGTTTGGGGGTTAAAATGTAATTTTTG
1 GTTCGAGATCAAAAATGGAATTTTTG-GAAAGTTCGAGGG-TAAAATGGAATTTTTG
65963 TGAAGTTTAG
Statistics
Matches: 137, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
57 25 0.18
58 62 0.45
59 36 0.26
60 14 0.10
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (59 bp):
GTTCGAGATCAAAAATGGAATTTTTGGAAAGTTCGAGGGTAAAATGGAATTTTTGGAAA
Found at i:65890 original size:58 final size:56
Alignment explanation
Indices: 65811--65993 Score: 197
Period size: 58 Copynumber: 3.2 Consensus size: 56
65801 CAAAAATTTA
* * *
65811 ATTTTTGTAAAGTTTGAGGTTAAAATGGAATTTTTGGAATTTTAGGGCCAAAATGGTG
1 ATTTTTGGAAATTTTGGGGTTAAAATGGAATTTTTGGAATTTTAGGG-CAAAAT-GTG
* * *
65869 ATTTTTGGAAATTTTGGGGTTAAAATGGAATTTTTGGAAGTTCGT-GGGAAAAATGTA
1 ATTTTTGGAAATTTTGGGGTTAAAATGGAATTTTTGGAA-TT-TTAGGGCAAAATGTG
* * * * *
65926 ATTTTTGTGAAGTTTGGGGGTTAAAATGTAATTTTTGTGAAGTTTAGGGACAAAATATG
1 ATTTTTG-GAAATTTTGGGGTTAAAATGGAATTTTTG-GAATTTTAGGG-CAAAATGTG
65985 ATTTTTGGA
1 ATTTTTGGA
65994 TAGTTTAGGG
Statistics
Matches: 105, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
57 10 0.10
58 73 0.70
59 21 0.20
60 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.27, T:0.40
Consensus pattern (56 bp):
ATTTTTGGAAATTTTGGGGTTAAAATGGAATTTTTGGAATTTTAGGGCAAAATGTG
Found at i:65894 original size:30 final size:30
Alignment explanation
Indices: 65744--65970 Score: 147
Period size: 30 Copynumber: 7.8 Consensus size: 30
65734 TTCGAGGTCA
* *
65744 AAAATGG-AATTTTTGGACA-TTCGAGGG-T
1 AAAATGGTAATTTTTGGAAAGTTTG-GGGTT
* * * * *
65772 AAAATGGTGATTTTTGGAAAGTTCGAGATCA
1 AAAATGGTAATTTTTGGAAAGTTTGGGGT-T
* * *
65803 AAAAT-TTAATTTTTGTAAAGTTTGAGGTT
1 AAAATGGTAATTTTTGGAAAGTTTGGGGTT
* * **
65832 AAAATGG-AATTTTTGG-AATTTTAGGGCC
1 AAAATGGTAATTTTTGGAAAGTTTGGGGTT
* *
65860 AAAATGGTGATTTTTGGAAATTTTGGGGTT
1 AAAATGGTAATTTTTGGAAAGTTTGGGGTT
* *
65890 AAAATGG-AATTTTTGG-AAGTTCGTGGG-A
1 AAAATGGTAATTTTTGGAAAGTTTG-GGGTT
65918 AAAAT-GTAATTTTTGTG-AAGTTTGGGGGTT
1 AAAATGGTAATTTTTG-GAAAGTTT-GGGGTT
65948 AAAAT-GTAATTTTTGTG-AAGTTT
1 AAAATGGTAATTTTTG-GAAAGTTT
65971 AGGGACAAAA
Statistics
Matches: 159, Mismatches: 28, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
27 1 0.01
28 39 0.25
29 52 0.33
30 62 0.39
31 5 0.03
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (30 bp):
AAAATGGTAATTTTTGGAAAGTTTGGGGTT
Found at i:65981 original size:29 final size:28
Alignment explanation
Indices: 65832--66005 Score: 136
Period size: 29 Copynumber: 6.0 Consensus size: 28
65822 GTTTGAGGTT
* * *
65832 AAAATGGAATTTTTGGAATTTTAGGGCC
1 AAAATGTAATTTTTGGAAGTTTAGGGAC
* * * **
65860 AAAATGGTGATTTTTGGAAATTTTGGGGTT
1 AAAAT-GTAATTTTTGG-AAGTTTAGGGAC
*
65890 AAAATGGAATTTTTGGAAGTTCGT-GGGA-
1 AAAATGTAATTTTTGGAAGTT--TAGGGAC
* **
65918 AAAATGTAATTTTTGTGAAGTTTGGGGGTT
1 AAAATGTAATTTTTG-GAAGTTT-AGGGAC
65948 AAAATGTAATTTTTGTGAAGTTTAGGGAC
1 AAAATGTAATTTTTG-GAAGTTTAGGGAC
* *
65977 AAAATATGATTTTTGGATAGTTTAGGGAC
1 AAAATGTAATTTTTGGA-AGTTTAGGGAC
66006 CTCTTGGGCA
Statistics
Matches: 121, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
27 1 0.01
28 25 0.21
29 57 0.47
30 38 0.31
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.39
Consensus pattern (28 bp):
AAAATGTAATTTTTGGAAGTTTAGGGAC
Found at i:67098 original size:3 final size:3
Alignment explanation
Indices: 67079--67113 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
67069 TTTCTTTTAT
*
67079 TTA TT- TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67114 ATGATGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:67815 original size:23 final size:23
Alignment explanation
Indices: 67788--67863 Score: 64
Period size: 23 Copynumber: 3.1 Consensus size: 23
67778 TAATTTGGAC
67788 ATTATAAATTTAAATAAATTTAA
1 ATTATAAATTTAAATAAATTTAA
* *
67811 ATTATAAATAGATTTAAACTTAATATAA
1 ATTAT--A-A-ATTTAAA-TAAATTTAA
*
67839 ACT-TAAATTTAAAATAAATTTAA
1 ATTATAAATTT-AAATAAATTTAA
67862 AT
1 AT
67864 CCTGCTAGGC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
23 17 0.41
24 4 0.10
25 2 0.05
26 1 0.02
27 8 0.20
28 9 0.22
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (23 bp):
ATTATAAATTTAAATAAATTTAA
Found at i:67820 original size:17 final size:16
Alignment explanation
Indices: 67792--67863 Score: 90
Period size: 17 Copynumber: 4.3 Consensus size: 16
67782 TTGGACATTA
67792 TAAATTTAAATAAATT
1 TAAATTTAAATAAATT
*
67808 TAAATTATAAATAGATT
1 TAAATT-TAAATAAATT
* *
67825 TAAACTTAATATAAACT
1 TAAATTTAA-ATAAATT
67842 TAAATTTAAAATAAATT
1 TAAATTT-AAATAAATT
67859 TAAAT
1 TAAAT
67864 CCTGCTAGGC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
16 9 0.19
17 36 0.77
18 2 0.04
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (16 bp):
TAAATTTAAATAAATT
Found at i:68535 original size:209 final size:210
Alignment explanation
Indices: 68168--69026 Score: 1275
Period size: 209 Copynumber: 4.1 Consensus size: 210
68158 ATTCAGTCTA
* * * * * * * * * *
68168 CTTCTCAGTATCTCATCAGGAAGATAGATCTGGTTCACTTCTC-TGTATCTTATTAGGAAGGTAA
1 CTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCGCTTCTCGAGTATCTCATCAGGAAGCTAA
** * * *
68232 CCGCTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGATTCGCTC
66 CCATTTTATTGCTTCGAACTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTC
* * *
68297 ACTTTGAG-TCTGTCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCTCAT
131 ACTTAGAGCT-TGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCAT
68361 CACTTGTTTCAATCCG
195 CACTTGTTTCAATCCG
68377 CTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCGCTTCTCGA-TATCTCATCAGGAAGCTAA
1 CTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCGCTTCTCGAGTATCTCATCAGGAAGCTAA
* * *
68441 CCATTTTATTGCTTTGAACTGCTTCTCAGTATCTCATCAGGAAGCCGGGGTACGAAGATTTGCTC
66 CCATTTTATTGCTTCGAACTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTC
*
68506 ACTT-GACACTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCAT
131 ACTTAGA-GCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCAT
* **
68570 CACTTATTTCAATTTG
195 CACTTGTTTCAATCCG
* **
68586 CTTCTCTGTATCTCATCAAGAAGATGAATTTGGTCCGCTTCTC-AGTATCTCAAT-AGGAAGCTA
1 CTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCGCTTCTCGAGTATCTC-ATCAGGAAGCTA
* *
68649 ACCATTTTATTGCTTC-AACCTGCTTCTCAGTATCTCATCAAGAAGTTGGGGTTCGAAGATTTGC
65 ACCATTTTATTGCTTCGAA-CTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGC
*
68713 TCACTTAGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAAGAAGATGACCGCA
129 TCACTTAGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCA
*
68778 TCACTTGTTTCAATTCG
194 TCACTTGTTTCAATCCG
* * *
68795 CTTCTCTGTATCTCATCAGGATGACGAATTTGGTCCGCTTCT-AAGTATCTCATCAGGAAGCTAA
1 CTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCGCTTCTCGAGTATCTCATCAGGAAGCTAA
* *
68859 CCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTTGGGTTCGAAGATTTGCTC
66 CCATTTTATTGCTTCGAACTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTC
* *
68924 ACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACTGCATC
131 ACTTAGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATC
68989 ACTTGTTTCAATCCG
196 ACTTGTTTCAATCCG
69004 CTTCTCTGTATCTCATCAGGAAG
1 CTTCTCTGTATCTCATCAGGAAG
69027 CTAACCATTT
Statistics
Matches: 592, Mismatches: 48, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
208 7 0.01
209 579 0.98
210 6 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (210 bp):
CTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCGCTTCTCGAGTATCTCATCAGGAAGCTAA
CCATTTTATTGCTTCGAACTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTC
ACTTAGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATC
ACTTGTTTCAATCCG
Found at i:69114 original size:172 final size:171
Alignment explanation
Indices: 68828--69197 Score: 688
Period size: 172 Copynumber: 2.2 Consensus size: 171
68818 ACGAATTTGG
**
68828 TCCGCTTCTAAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
1 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
*
68893 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
68958 CTCAGTACCTCATCAGGAAGATGA-CTGCATCACTTGTTTCAA
131 CTCAGTACCTCATCAGGAAGATGACCT-CATCACTTG-TTCAA
69000 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
1 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
69065 CATCAGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
69130 CTCAGTACCTCATCAGGAAGATGACCTCATCACTTGTTCAA
131 CTCAGTACCTCATCAGGAAGATGACCTCATCACTTGTTCAA
69171 TCCGCTTCTCTGTATCTCATCAGGAAG
1 TCCGCTTCTCTGTATCTCATCAGGAAG
69198 ACGAATTTGG
Statistics
Matches: 194, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
171 32 0.16
172 160 0.82
173 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (171 bp):
TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
CATCAGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
CTCAGTACCTCATCAGGAAGATGACCTCATCACTTGTTCAA
Found at i:69327 original size:380 final size:381
Alignment explanation
Indices: 68619--69406 Score: 1368
Period size: 380 Copynumber: 2.1 Consensus size: 381
68609 ATGAATTTGG
*
68619 TCCGCTTCTCAGTATCTCAAT-AGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCAGTATC
1 TCCGCTTCTCTGTATCTC-ATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCAGTATC
*
68683 TCATCAAGAAGTTGGGGTTCGAAGATTTGCTCACTTAGAGCTTGGCTTCATTGATTTGGTCTTCT
65 TCATCAAGAAGTTGGGGTTCAAAGATTTGCTCACTTAGAGCTTGGCTTCATTGATTTGGTCTTCT
*
68748 TCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTTCAATTCGCTTCTCTGTATCTCATCA
130 TCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCA
*
68813 GGATGACGAATTTGGTCCGCTTCTAAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACC
195 GGAAGACGAATTTGGTCCGCTTCTAAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACC
**
68878 TGCTTCTCAGTATCTCATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCAT
260 TGCTTCTCAGTATCTCATCAGGAAGCCAGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCAT
* * *
68943 TGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACTGCATCACTTGTTTCAA
325 TGATTTGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAA
*
69000 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
1 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCAGTATCT
* *
69065 CATCAGGAAGCTT-GGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCT
66 CATCAAGAAG-TTGGGGTTCAAAGATTTGCTCACTTAGAGCTTGGCTTCATTGATTTGGTCTTCT
* *
69129 TCTCAGTACCTCATCAGGAAGATGACCTCATCACTTG-TTCAATCCGCTTCTCTGTATCTCATCA
130 TCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCA
69193 GGAAGACGAATTTGGTCCGCTTCTCAA-TATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAC
195 GGAAGACGAATTTGGTCCGCTTCT-AAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAC
* *
69257 CTGCTTCTCAGTATCTCATCAGGAAGCCAGGGTTCGAAGATTTGCTCACTTGGCGCTTGGCTTTA
259 CTGCTTCTCAGTATCTCATCAGGAAGCCAGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCA
69322 TTGATTTGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAA
324 TTGATTTGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAA
*
69380 TTCGCTTCTCTGTATCTCATCAGGAAG
1 TCCGCTTCTCTGTATCTCATCAGGAAG
69407 ATGAATTTGG
Statistics
Matches: 387, Mismatches: 17, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
380 230 0.59
381 155 0.40
382 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (381 bp):
TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCAGTATCT
CATCAAGAAGTTGGGGTTCAAAGATTTGCTCACTTAGAGCTTGGCTTCATTGATTTGGTCTTCTT
CTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAG
GAAGACGAATTTGGTCCGCTTCTAAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCT
GCTTCTCAGTATCTCATCAGGAAGCCAGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATT
GATTTGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAA
Found at i:69360 original size:589 final size:590
Alignment explanation
Indices: 68410--69613 Score: 2029
Period size: 589 Copynumber: 2.0 Consensus size: 590
68400 ACAAATTTGG
*
68410 TCCGCTTCTC-GATATCTCATCAGGAAGCTAACCATTTTATTGCTTTGAACTGCTTCTCAGTATC
1 TCCGCTTCTCTG-TATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAACTGCTTCTCAGTATC
*
68474 TCATCAGGAAGCCGGGGTACGAAGATTTGCTCACTTGACACTTGGCTTCATTGATTTGGTCTTCT
65 TCATCAGGAAGCCGGGGTACAAAGATTTGCTCACTTGACACTTGGCTTCATTGATTTGGTCTTCT
* **
68539 TCTCAGTACCTCATCAGGAAGATGACCGCATCACTTATTTCAATTTGCTTCTCTGTATCTCATCA
130 TCTCAGTACCTCATCAGGAAGATGACCGCATCACTTAGTTCAATCCGCTTCTCTGTATCTCATCA
* *
68604 AGAAGATGAATTTGGTCCGCTTCTCAGTATCTCAATAGGAAGCTAACCATTTTATTGCTTCAACC
195 AGAAGACGAATTTGGTCCGCTTCTCAATATCTCAATAGGAAGCTAACCATTTTATTGCTTCAACC
***
68669 TGCTTCTCAGTATCTCATCAAGAAGTTGGGGTTCGAAGATTTGCTCACTTAGAGCTTGGCTTCAT
260 TGCTTCTCAGTATCTCATCAAGAAGCCAGGGTTCGAAGATTTGCTCACTTAGAGCTTGGCTTCAT
* *
68734 TGATTTGGTCTTCTTCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTTCAATTCGCTTC
325 TGATTTGGTCTTCTTCTCAGTACCTCAACAAGAAGATGACCGCATCACTTATTTCAATTCGCTTC
* * *
68799 TCTGTATCTCATCAGGATGACGAATTTGGTCCGCTTCTAAGTATCTCATCAGGAAGCTAACCATT
390 TCTGTATCTCATCAGGAAGACGAATTTGGTCCGCTTCTAAGTACCTCAACAGGAAGCTAACCATT
* *
68864 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTG
455 TTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTG
*
68929 GAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACTGCATCACTTG
520 GAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATCACTTG
68994 TTTCAA
585 TTTCAA
*
69000 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
1 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAACTGCTTCTCAGTATCT
** * *
69065 CATCAGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGA-GCTTGGCTTCATTGATTTGGTCTTCT
66 CATCAGGAAGCCGGGGTACAAAGATTTGCTCACTT-GACACTTGGCTTCATTGATTTGGTCTTCT
*
69129 TCTCAGTACCTCATCAGGAAGATGACCTCATCACTT-GTTCAATCCGCTTCTCTGTATCTCATCA
130 TCTCAGTACCTCATCAGGAAGATGACCGCATCACTTAGTTCAATCCGCTTCTCTGTATCTCATCA
* *
69193 GGAAGACGAATTTGGTCCGCTTCTCAATATCTC-ATCAGGAAGCTAACCATTTTATTGCTTCGAC
195 AGAAGACGAATTTGGTCCGCTTCTCAATATCTCAAT-AGGAAGCTAACCATTTTATTGCTTCAAC
* * * *
69257 CTGCTTCTCAGTATCTCATCAGGAAGCCAGGGTTCGAAGATTTGCTCACTTGGCGCTTGGCTTTA
259 CTGCTTCTCAGTATCTCATCAAGAAGCCAGGGTTCGAAGATTTGCTCACTTAGAGCTTGGCTTCA
*
69322 TTGATTTGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAATTCGCTT
324 TTGATTTGGTCTTCTTCTCAGTACCTCAACAAGAAGATGACCGCATCACTTATTTCAATTCGCTT
* ** *
69387 CTCTGTATCTCATCAGGAAGATGAATTTGGTCTTCTTCTCAGTACCTCAACAGGAAGCTAACCAT
389 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCGCTTCTAAGTACCTCAACAGGAAGCTAACCAT
69452 TTTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTT
454 TTTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTT
69517 GGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATCACTT
519 GGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATCACTT
69582 GTTTCAA
584 GTTTCAA
*
69589 TCAGCTTCTCTGTATCTCATCAGGA
1 TCCGCTTCTCTGTATCTCATCAGGA
69614 TGACGAATTT
Statistics
Matches: 575, Mismatches: 36, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
588 2 0.00
589 418 0.73
590 152 0.26
591 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (590 bp):
TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAACTGCTTCTCAGTATCT
CATCAGGAAGCCGGGGTACAAAGATTTGCTCACTTGACACTTGGCTTCATTGATTTGGTCTTCTT
CTCAGTACCTCATCAGGAAGATGACCGCATCACTTAGTTCAATCCGCTTCTCTGTATCTCATCAA
GAAGACGAATTTGGTCCGCTTCTCAATATCTCAATAGGAAGCTAACCATTTTATTGCTTCAACCT
GCTTCTCAGTATCTCATCAAGAAGCCAGGGTTCGAAGATTTGCTCACTTAGAGCTTGGCTTCATT
GATTTGGTCTTCTTCTCAGTACCTCAACAAGAAGATGACCGCATCACTTATTTCAATTCGCTTCT
CTGTATCTCATCAGGAAGACGAATTTGGTCCGCTTCTAAGTACCTCAACAGGAAGCTAACCATTT
TATTGCTTCAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTGG
AGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATCACTTGT
TTCAA
Found at i:69491 original size:209 final size:209
Alignment explanation
Indices: 69000--69824 Score: 1400
Period size: 209 Copynumber: 4.0 Consensus size: 209
68990 CTTGTTTCAA
*
69000 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
1 TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
*
69065 CATCAGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
*
69130 CTCAGTACCTCATCAGGAAGATGACCTCATCACTTG-TTCAATCCGCTTCTCTGTATCTCATCAG
131 CTCAGTACCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAG
69194 GAAGACGAATTTGG
196 GAAGACGAATTTGG
*
69208 TCCGCTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
1 TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
** * *
69273 CATCAGGAAGCCAGGGTTCGAAGATTTGCTCACTTGGCGCTTGGCTTTATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
* * *
69338 CTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAATTCGCTTCTCTGTATCTCATCAG
131 CTCAGTACCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAG
*
69403 GAAGATGAATTTGG
196 GAAGACGAATTTGG
** * * *
69417 TCTTCTTCTCAGTACCTCAACAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCAGTATCT
1 TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
*
69482 CATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
*
69547 CTCAGTACCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCAGCTTCTCTGTATCTCATCAG
131 CTCAGTACCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAG
* *
69612 GATGACGAATTTAG
196 GAAGACGAATTTGG
* * *
69626 TCCGCTTCTAAGTATCTCATTAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCT
1 TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
69691 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
* * *
69756 CTCAATACCTCATCTGGAAGATGACTGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAG
131 CTCAGTACCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAG
69821 GAAG
196 GAAG
69825 CTAACCATTT
Statistics
Matches: 573, Mismatches: 43, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
208 156 0.27
209 417 0.73
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (209 bp):
TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
CTCAGTACCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAG
GAAGACGAATTTGG
Found at i:69742 original size:798 final size:799
Alignment explanation
Indices: 68205--69996 Score: 3180
Period size: 798 Copynumber: 2.2 Consensus size: 799
68195 ATCTGGTTCA
* * * **
68205 CTTCTCTGTATCTTATTAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
1 CTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
* * * *
68270 AGGAAG-TTGGGGTTCGAAGATTCGCTCACTTTGAG-TCTGTCTTCATTGATTTGGTCTTCTTCT
66 AGGAAGCTT-GGGTTCAAAGATTTGCTCACTTGGAGCT-TGGCTTCATTGATTTGGTCTTCTTCT
68333 CAGTACCTCATCAGGAAGATGACCTCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGA
129 CAGTACCTCATCAGGAAGATGACCTCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGA
* *
68398 AGACAAATTTGGTCCGCTTCTCGATATCTCATCAGGAAGCTAACCATTTTATTGCTTTGAACTGC
194 AGACAAATTTGGTCCGCTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAACTGC
*
68463 TTCTCAGTATCTCATCAGGAAGCCGGGGTACGAAGATTTGCTCACTTGACACTTGGCTTCATTGA
259 TTCTCAGTATCTCATCAGGAAGCCAGGGTACGAAGATTTGCTCACTTGACACTTGGCTTCATTGA
* *
68528 TTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATCACTTATTTCAATTTGCTTCTCT
324 TTTGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAATTCGCTTCTCT
* *
68593 GTATCTCATCAAGAAGATGAATTTGGTCCGCTTCTCAGTATCTCAATAGGAAGCTAACCATTTTA
389 GTATCTCATCAAGAAGATGAATTTGGTCCGCTTCTCAGTACCTCAACAGGAAGCTAACCATTTTA
*
68658 TTGCTTCAACCTGCTTCTCAGTATCTCATCAAGAAGTTGGGGTTCGAAGATTTGCTCACTTAGAG
454 TTGCTTCAACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTAGAG
68723 CTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTT
519 CTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTT
*
68788 CAATTCGCTTCTCTGTATCTCATCAGGATGACGAATTTGGTCCGCTTCTAAGTATCTCATCAGGA
584 CAATTCGCTTCTCTGTATCTCATCAGGATGACGAATTTAGTCCGCTTCTAAGTATCTCATCAGGA
*
68853 AGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTTGGGTTCGAAGAT
649 AGCTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTTGGGTTCGAAGAT
*
68918 TTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGAC
714 TTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCAGGAAGATGAC
68983 TGCATCACTTGTTTCAATCCG
779 TGCATCACTTGTTTCAATCCG
69004 CTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
1 CTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
69069 AGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
66 AGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
69134 GTACCTCATCAGGAAGATGACCTCATCACTTG-TTCAATCCGCTTCTCTGTATCTCATCAGGAAG
131 GTACCTCATCAGGAAGATGACCTCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
* *
69198 ACGAATTTGGTCCGCTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTT
196 ACAAATTTGGTCCGCTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAACTGCTT
* * * *
69263 CTCAGTATCTCATCAGGAAGCCAGGGTTCGAAGATTTGCTCACTTGGCGCTTGGCTTTATTGATT
261 CTCAGTATCTCATCAGGAAGCCAGGGTACGAAGATTTGCTCACTTGACACTTGGCTTCATTGATT
69328 TGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAATTCGCTTCTCTGT
326 TGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAATTCGCTTCTCTGT
* **
69393 ATCTCATCAGGAAGATGAATTTGGTCTTCTTCTCAGTACCTCAACAGGAAGCTAACCATTTTATT
391 ATCTCATCAAGAAGATGAATTTGGTCCGCTTCTCAGTACCTCAACAGGAAGCTAACCATTTTATT
* *
69458 GCTTCAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTGGAGCT
456 GCTTCAACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTAGAGCT
*
69523 TGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAGGAAGATGACCGCATCACTTGTTTCA
521 TGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTTCA
*
69588 A-TCAGCTTCTCTGTATCTCATCAGGATGACGAATTTAGTCCGCTTCTAAGTATCTCATTAGGAA
586 ATTC-GCTTCTCTGTATCTCATCAGGATGACGAATTTAGTCCGCTTCTAAGTATCTCATCAGGAA
69652 GCTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTTGGGTTCGAAGATT
650 GCTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTTGGGTTCGAAGATT
*
69717 TGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCTGGAAGATGACT
715 TGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCAGGAAGATGACT
69782 GCATCACTTGTTTCAATCCG
780 GCATCACTTGTTTCAATCCG
69802 CTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
1 CTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
*
69867 AGGAAGCTTGGGTTCAAAGATTTCCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
66 AGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
* *
69932 GTACCTCATCAGGAAGATGA-CTGCATCACTTGTTTCAATCTGCTTCTCAGTATCTCATCAGGAA
131 GTACCTCATCAGGAAGATGACCT-CATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAA
69996 G
195 G
69997 CTAACCATTT
Statistics
Matches: 951, Mismatches: 37, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
797 4 0.00
798 766 0.81
799 178 0.19
800 3 0.00
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (799 bp):
CTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
AGGAAGCTTGGGTTCAAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCA
GTACCTCATCAGGAAGATGACCTCATCACTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
ACAAATTTGGTCCGCTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAACTGCTT
CTCAGTATCTCATCAGGAAGCCAGGGTACGAAGATTTGCTCACTTGACACTTGGCTTCATTGATT
TGGTCTTCTTCTCAGTACCTCAACAGGAAGATGACCGCATCACTTATTTCAATTCGCTTCTCTGT
ATCTCATCAAGAAGATGAATTTGGTCCGCTTCTCAGTACCTCAACAGGAAGCTAACCATTTTATT
GCTTCAACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTAGAGCT
TGGCTTCATTGATTTGGTCTTCTTCTCAGTACCTCATCAAGAAGATGACCGCATCACTTGTTTCA
ATTCGCTTCTCTGTATCTCATCAGGATGACGAATTTAGTCCGCTTCTAAGTATCTCATCAGGAAG
CTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCTCATCAGGAAGCTTGGGTTCGAAGATTT
GCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTTCTCAATACCTCATCAGGAAGATGACTG
CATCACTTGTTTCAATCCG
Found at i:69912 original size:172 final size:172
Alignment explanation
Indices: 69626--70120 Score: 801
Period size: 172 Copynumber: 2.9 Consensus size: 172
69616 ACGAATTTAG
* * *
69626 TCCGCTTCTAAGTATCTCATTAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAATATCT
1 TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
69691 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
*
69756 CTCAATACCTCATCTGGAAGATGACTGCATCACTTGTTTCAA
131 CTCAATACCTCATCAGGAAGATGACTGCATCACTTGTTTCAA
*
69798 TCCGCTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
1 TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
* *
69863 CATCAGGAAGCTTGGGTTCAAAGATTTCCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
66 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
*
69928 CTCAGTACCTCATCAGGAAGATGACTGCATCACTTGTTTCAA
131 CTCAATACCTCATCAGGAAGATGACTGCATCACTTGTTTCAA
* * *
69970 TCTGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCAACCTGCTTCTTAGTATCT
1 TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
* ** * * * *
70035 CATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTGGAGCTTGATTTCATCGAGTTGGTATACTT
66 CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
** *
70100 CTCTGTATCTCATCAGGAAGA
131 CTCAATACCTCATCAGGAAGA
70121 CGACCAGCTC
Statistics
Matches: 300, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
172 300 1.00
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (172 bp):
TCCGCTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCT
CATCAGGAAGCTTGGGTTCGAAGATTTGCTCACTTGGAGCTTGGCTTCATTGATTTGGTCTTCTT
CTCAATACCTCATCAGGAAGATGACTGCATCACTTGTTTCAA
Found at i:70733 original size:17 final size:16
Alignment explanation
Indices: 70705--70764 Score: 75
Period size: 17 Copynumber: 3.6 Consensus size: 16
70695 TTGGACATTA
70705 TAAATTTAAATAAATT
1 TAAATTTAAATAAATT
*
70721 TAAATTCTAAATAGATT
1 TAAATT-TAAATAAATT
* *
70738 TAAACTTAATATAAACT
1 TAAATTTAA-ATAAATT
70755 TAAATTTAAA
1 TAAATTTAAA
70765 GCTAATCACT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 10 0.27
17 27 0.73
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (16 bp):
TAAATTTAAATAAATT
Found at i:74655 original size:29 final size:29
Alignment explanation
Indices: 74606--74685 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 29
74596 AATAAAGCAA
* *
74606 TCGGGGTTAAAAAT-GTGATTTTTGGACAC
1 TCGGGGGT-AAAATGGTAATTTTTGGACAC
74635 TCGGGGGTAAAATGGTAA-TTTTGGACAC
1 TCGGGGGTAAAATGGTAATTTTTGGACAC
*
74663 TCAGGGGGCAAAATGGTAATTTT
1 TC-GGGGGTAAAATGGTAATTTT
74686 GGGAAGTTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
28 17 0.38
29 25 0.56
30 3 0.07
ACGTcount: A:0.29, C:0.10, G:0.30, T:0.31
Consensus pattern (29 bp):
TCGGGGGTAAAATGGTAATTTTTGGACAC
Found at i:74656 original size:28 final size:29
Alignment explanation
Indices: 74625--74687 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
74615 AAAATGTGAT
*
74625 TTTTGGACACTC-GGGGGTAAAATGGTAA
1 TTTTGGACACTCAGGGGGCAAAATGGTAA
74653 TTTTGGACACTCAGGGGGCAAAATGGTAA
1 TTTTGGACACTCAGGGGGCAAAATGGTAA
74682 TTTTGG
1 TTTTGG
74688 GAAGTTTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 12 0.36
29 21 0.64
ACGTcount: A:0.27, C:0.11, G:0.32, T:0.30
Consensus pattern (29 bp):
TTTTGGACACTCAGGGGGCAAAATGGTAA
Found at i:74801 original size:29 final size:28
Alignment explanation
Indices: 74761--74866 Score: 97
Period size: 29 Copynumber: 3.7 Consensus size: 28
74751 AATCGGGATC
* *
74761 AAAAATGGAATTTTTGGAAGTTCGAGGCT
1 AAAAATGTAATTTTTGAAAGTT-GAGGCT
* *
74790 AAAAATGTAATTTTTGAAAAAATTGAGGTT
1 AAAAATGTAATTTTTG--AAAGTTGAGGCT
* * * *
74820 AAAAATGAAATTTTTGTAAGTTTGGGGGT
1 AAAAATGTAATTTTTGAAAG-TTGAGGCT
74849 AAAAATGTAA-TTTTGAAA
1 AAAAATGTAATTTTTGAAA
74867 AAGTTTAGGG
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
28 9 0.14
29 30 0.48
30 20 0.32
31 4 0.06
ACGTcount: A:0.42, C:0.02, G:0.22, T:0.35
Consensus pattern (28 bp):
AAAAATGTAATTTTTGAAAGTTGAGGCT
Found at i:74833 original size:59 final size:59
Alignment explanation
Indices: 74729--74868 Score: 167
Period size: 59 Copynumber: 2.3 Consensus size: 59
74719 ATCAAGGGGT
*
74729 AAAATGGTAATTTTTGGAAAAAAATCGGGATCAAAAATGGAATTTTTGGAAGTTCGAGGCTA
1 AAAAT-GTAATTTTT-G-AAAAAATCGGGATCAAAAATGAAATTTTTGGAAGTTCGAGGCTA
* * * * * *
74791 AAAATGTAATTTTTGAAAAAATTGAGG-TTAAAAATGAAATTTTTGTAAGTTTGGGGGTA
1 AAAATGTAATTTTTGAAAAAATCG-GGATCAAAAATGAAATTTTTGGAAGTTCGAGGCTA
74850 AAAATGTAA-TTTTGAAAAA
1 AAAATGTAATTTTTGAAAAA
74869 GTTTAGGGGT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
58 10 0.14
59 43 0.61
60 3 0.04
61 9 0.13
62 5 0.07
ACGTcount: A:0.43, C:0.03, G:0.21, T:0.33
Consensus pattern (59 bp):
AAAATGTAATTTTTGAAAAAATCGGGATCAAAAATGAAATTTTTGGAAGTTCGAGGCTA
Found at i:74878 original size:30 final size:31
Alignment explanation
Indices: 74789--74894 Score: 112
Period size: 30 Copynumber: 3.5 Consensus size: 31
74779 AGTTCGAGGC
* * *
74789 TAAAAATGTAATTTTTGAAAAAATTGA-GGT
1 TAAAAATGTAATTTTTGAAAAAGTTTAGGGG
* * *
74819 TAAAAATGAAATTTTTG--TAAGTTTGGGGG
1 TAAAAATGTAATTTTTGAAAAAGTTTAGGGG
74848 TAAAAATGTAA-TTTTGAAAAAGTTTAGGGG
1 TAAAAATGTAATTTTTGAAAAAGTTTAGGGG
* *
74878 TCAAAATGTGATTTTTG
1 TAAAAATGTAATTTTTG
74895 GACAGTTAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
28 9 0.15
29 12 0.20
30 35 0.57
31 5 0.08
ACGTcount: A:0.40, C:0.01, G:0.22, T:0.38
Consensus pattern (31 bp):
TAAAAATGTAATTTTTGAAAAAGTTTAGGGG
Found at i:74884 original size:59 final size:59
Alignment explanation
Indices: 74729--74901 Score: 161
Period size: 59 Copynumber: 2.9 Consensus size: 59
74719 ATCAAGGGGT
* * *
74729 AAAATGGTAATTTTTGGAAAAAAATCG-GGATCAAAAATGGAATTTTTGGAAGTTCGAGGCTA
1 AAAAT-GTAATTTTT-G-AAAAAATTGAGGGT-AAAAATGAAATTTTTGGAAGTTCGAGGCTA
* * * * *
74791 AAAATGTAATTTTTGAAAAAATTGAGGTTAAAAATGAAATTTTTGTAAGTTTGGGGGTA
1 AAAATGTAATTTTTGAAAAAATTGAGGGTAAAAATGAAATTTTTGGAAGTTCGAGGCTA
* * * **
74850 AAAATGTAA-TTTTGAAAAAGTTTAGGGGTCAAAATGTGATTTTTGGACAGTT
1 AAAATGTAATTTTTGAAAAAATTGA-GGGTAAAAATGAAATTTTTGGA-AGTT
74902 AAGGGACCTC
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
58 13 0.14
59 59 0.63
60 8 0.09
61 9 0.10
62 5 0.05
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.34
Consensus pattern (59 bp):
AAAATGTAATTTTTGAAAAAATTGAGGGTAAAAATGAAATTTTTGGAAGTTCGAGGCTA
Found at i:76042 original size:20 final size:20
Alignment explanation
Indices: 76005--76043 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
75995 TTTCTATTTT
* *
76005 TTTATTTTTAATATTAAATA
1 TTTATTATTAATAATAAATA
*
76025 TTTATTATTATTAATAAAT
1 TTTATTATTAATAATAAAT
76044 TCAGTATTAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATTATTAATAATAAATA
Found at i:76953 original size:11 final size:11
Alignment explanation
Indices: 76917--76959 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
76907 TATAATAAGT
76917 TTTAAATTTAAA
1 TTTAAA-TTAAA
* *
76929 TATCAATGTAAA
1 TTTAAAT-TAAA
76941 TTTAAATTAAA
1 TTTAAATTAAA
76952 TTTAAATT
1 TTTAAATT
76960 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 13 0.50
12 13 0.50
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (11 bp):
TTTAAATTAAA
Found at i:76959 original size:17 final size:17
Alignment explanation
Indices: 76897--77009 Score: 95
Period size: 17 Copynumber: 6.4 Consensus size: 17
76887 GTAATTGGAC
*
76897 ATTTAATATTTATAATAA
1 ATTTAA-ATTTAAAATAA
* *
76915 GTTTTAAATTTAAATATCA
1 -ATTTAAATTTAAA-ATAA
* *
76934 ATGTAAATTTAAATTAA
1 ATTTAAATTTAAAATAA
76951 ATTTAAATTTTAAAA-AA
1 ATTTAAA-TTTAAAATAA
* *
76968 ATATATATTTAAAATAA
1 ATTTAAATTTAAAATAA
76985 ATTT-AATCTTAAAATAA
1 ATTTAAAT-TTAAAATAA
77002 ATCTTAAA
1 AT-TTAAA
77010 AATGGGTTTG
Statistics
Matches: 75, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
16 9 0.12
17 31 0.41
18 25 0.33
19 10 0.13
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:76964 original size:7 final size:6
Alignment explanation
Indices: 76917--76960 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
76907 TATAATAAGT
* * *
76917 TTTAAA TTTAAA TATCAA TGTAAA TTTAAA -TTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT
76961 TAAAAAAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (6 bp):
TTTAAA
Found at i:78009 original size:49 final size:49
Alignment explanation
Indices: 77955--78198 Score: 163
Period size: 49 Copynumber: 4.9 Consensus size: 49
77945 GTATCTTTGC
* * **
77955 GGTACTGGATTCACCGTTGTGGCCTAAATCTTTCCCTTTGTGTCTTCAT
1 GGTACTGGATCCACCGTTGCGGCCTAAATCTTTCCCTTCATGTCTTCAT
* * *
78004 GGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATGTCTTC-T
1 GGTACTGGATCCACCGTTGCGGCCTAAATCTTTCCCTTCATGTCTTCAT
** * * * ***
78052 GAGGTAC-ACAGTCCGCCGTTGCGACTTAAA-CATTTCCCTTC-TGTATCTTTGC
1 --GGTACTGGA-TCCACCGTTGCGGCCTAAATC-TTTCCCTTCATG--TCTTCAT
* * * * * *
78104 GGTACCGGATCCACCGTTGTGACTTAGATCTTTCCCTTCATGTCTTCGT
1 GGTACTGGATCCACCGTTGCGGCCTAAATCTTTCCCTTCATGTCTTCAT
* * * * * *
78153 GGTACTGGATTCGCCGTTACTGCTTAAATCTTTCCCCTCATGTCTT
1 GGTACTGGATCCACCGTTGCGGCCTAAATCTTTCCCTTCATGTCTT
78199 TTGAGGTACA
Statistics
Matches: 156, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
48 1 0.01
49 86 0.55
50 61 0.39
51 8 0.05
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (49 bp):
GGTACTGGATCCACCGTTGCGGCCTAAATCTTTCCCTTCATGTCTTCAT
Found at i:78088 original size:50 final size:49
Alignment explanation
Indices: 78004--78300 Score: 259
Period size: 50 Copynumber: 6.0 Consensus size: 49
77994 GTGTCTTCAT
* * *
78004 GGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTCATGTCTTCTGA
1 GGTACCGGATCCGCCGTTGCGACTTAGAACTTTCCCTTCATGTCTT-TGA
* *
78054 GGTACACAG-TCCGCCGTTGCGACTTA-AACATTTCCCTTC-TGTATCTTTGC
1 GGTAC-CGGATCCGCCGTTGCGACTTAGAAC-TTTCCCTTCATG--TCTTTGA
* * * * *
78104 GGTACCGGATCCACCGTTGTGACTTAGATCTTTCCCTTCATGTCTTCGT
1 GGTACCGGATCCGCCGTTGCGACTTAGAACTTTCCCTTCATGTCTTTGA
* * * *
78153 GGTACTGGATTCGCCGTTACTG-CTTA-AATCTTTCCCCTCATGTCTTTTGA
1 GGTACCGGATCCGCCGTTGC-GACTTAGAA-CTTTCCCTTCATGTC-TTTGA
* * *
78203 GGTACACGG-TCTGCCGTTGCGACTTAG-ACTTTTCCCTT-TTGTATCTTTGC
1 GGTAC-CGGATCCGCCGTTGCGACTTAGAAC-TTTCCCTTCATG--TCTTTGA
* *
78253 GGTACCAGATCCGCCGTTGCGACTTAGATCTTTCCCTTCATGTCTTTG
1 GGTACCGGATCCGCCGTTGCGACTTAGAACTTTCCCTTCATGTCTTTG
78301 CGATACTAGA
Statistics
Matches: 197, Mismatches: 31, Indels: 39
0.74 0.12 0.15
Matches are distributed among these distances:
48 1 0.01
49 56 0.28
50 124 0.63
51 16 0.08
ACGTcount: A:0.14, C:0.28, G:0.21, T:0.37
Consensus pattern (49 bp):
GGTACCGGATCCGCCGTTGCGACTTAGAACTTTCCCTTCATGTCTTTGA
Found at i:78168 original size:149 final size:149
Alignment explanation
Indices: 77895--78298 Score: 556
Period size: 149 Copynumber: 2.7 Consensus size: 149
77885 TTCGTCTTTG
* * * * * *
77895 TGTCTTCTGAGGTACACGGTTCGTCGTTACGAGTTAGACCTTTCCTTTTTGTATCTTTGCGGTAC
1 TGTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACATTTCCCTTTTGTATCTTTGCGGTAC
* * * * * ** *
77960 TGGATTCACCGTTGTGGCCTAAATCTTTCCCTTTGTGTCTTCATGGTACTGGATCCGCCGTTGCG
66 CGGATCCACCGTTGTGACTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATCCGCCGTTACG
* *
78025 GCTTAGATCTTTCCCTTCA
131 GCTTAAATCTTTCCCCTCA
* * *
78044 TGTCTTCTGAGGTACACAGTCCGCCGTTGCGACTTAAACATTTCCCTTCTGTATCTTTGCGGTAC
1 TGTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACATTTCCCTTTTGTATCTTTGCGGTAC
* * *
78109 CGGATCCACCGTTGTGACTTAGATCTTTCCCTTCATGTCTTCGTGGTACTGGATTCGCCGTTACT
66 CGGATCCACCGTTGTGACTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATCCGCCGTTACG
78174 GCTTAAATCTTTCCCCTCA
131 GCTTAAATCTTTCCCCTCA
* * *
78193 TGTCTTTTGAGGTACACGGTCTGCCGTTGCGACTTAGACTTTTCCCTTTTGTATCTTTGCGGTAC
1 TGTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACATTTCCCTTTTGTATCTTTGCGGTAC
* * *
78258 CAGATCCGCCGTTGCGACTTAGATCTTTCCCTTCATGTCTT
66 CGGATCCACCGTTGTGACTTAGATCTTTCCCTTCATGTCTT
78299 TGCGATACTA
Statistics
Matches: 224, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
149 224 1.00
ACGTcount: A:0.14, C:0.27, G:0.21, T:0.38
Consensus pattern (149 bp):
TGTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAGACATTTCCCTTTTGTATCTTTGCGGTAC
CGGATCCACCGTTGTGACTTAGATCTTTCCCTTCATGTCTTCATGGTACTGGATCCGCCGTTACG
GCTTAAATCTTTCCCCTCA
Found at i:78295 original size:100 final size:98
Alignment explanation
Indices: 77979--78299 Score: 305
Period size: 100 Copynumber: 3.2 Consensus size: 98
77969 CGTTGTGGCC
* * * * *
77979 TAAATCTTTCCCTT-TGTGTCTTCATGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTC
1 TAAATCTTTCCCTTCTGTCTTTTGA-GGTACCGGATCCGCCGTTGCGACTTAGATCTTTCCCTTC
*
78043 ATGTCTTCTGAGGTACACAG-TCCGCCGTTGCGACT
65 ATGTCTT-TGCGGTAC-CAGATCCGCCGTTGCGACT
* * * *
78078 TAAA-CATTTCCCTTCTGTATCTTTGCGGTACCGGATCCACCGTTGTGACTTAGATCTTTCCCTT
1 TAAATC-TTTCCCTTCTGTCT-TTTGAGGTACCGGATCCGCCGTTGCGACTTAGATCTTTCCCTT
* * ** * *
78142 CATGTCTTCGTGGTACTGGATTCGCCGTTACTG-CT
64 CATGTCTTTGCGGTACCAGATCCGCCGTTGC-GACT
* *
78177 TAAATCTTTCCCCTCATGTCTTTTGAGGTACACGG-TCTGCCGTTGCGACTTAGA-CTTTTCCCT
1 TAAATCTTTCCCTTC-TGTCTTTTGAGGTAC-CGGATCCGCCGTTGCGACTTAGATC-TTTCCCT
*
78240 T-TTGTATCTTTGCGGTACCAGATCCGCCGTTGCGACT
63 TCATG--TCTTTGCGGTACCAGATCCGCCGTTGCGACT
*
78277 TAGATCTTTCCCTTCATGTCTTT
1 TAAATCTTTCCCTTC-TGTCTTT
78300 GCGATACTAG
Statistics
Matches: 181, Mismatches: 29, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
98 5 0.03
99 75 0.41
100 99 0.55
101 2 0.01
ACGTcount: A:0.15, C:0.28, G:0.19, T:0.38
Consensus pattern (98 bp):
TAAATCTTTCCCTTCTGTCTTTTGAGGTACCGGATCCGCCGTTGCGACTTAGATCTTTCCCTTCA
TGTCTTTGCGGTACCAGATCCGCCGTTGCGACT
Found at i:82864 original size:18 final size:19
Alignment explanation
Indices: 82822--82864 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
82812 ACCTGTCGTG
82822 CTTTTCTCATCTCTCGCTT
1 CTTTTCTCATCTCTCGCTT
* **
82841 CCTTTCT-ATCTCTTTCTT
1 CTTTTCTCATCTCTCGCTT
82859 CTTTTC
1 CTTTTC
82865 CTTCTCATCT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.05, C:0.35, G:0.02, T:0.58
Consensus pattern (19 bp):
CTTTTCTCATCTCTCGCTT
Found at i:86061 original size:10 final size:10
Alignment explanation
Indices: 86046--86081 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
86036 GTGAGTATGC
86046 AATGCGAATG
1 AATGCGAATG
86056 AATGCGAATG
1 AATGCGAATG
*
86066 AATACGAATG
1 AATGCGAATG
86076 AATGCG
1 AATGCG
86082 TGAATACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.42, C:0.11, G:0.28, T:0.19
Consensus pattern (10 bp):
AATGCGAATG
Found at i:89835 original size:29 final size:30
Alignment explanation
Indices: 89803--89967 Score: 74
Period size: 29 Copynumber: 5.6 Consensus size: 30
89793 CTCGATGAGC
*
89803 AAAATGGTAATTTTGGGAAAGT-TCGGGGTAA
1 AAAATGGTAATTTTAGGAAA-TCTCGGGGT-A
* *
89834 AAAAT-GAAATTTTAGG-AATCTGGGGGT-
1 AAAATGGTAATTTTAGGAAATCTCGGGGTA
* ** * *
89861 AAAATGGTAATTTTTGGAAAAAATCGGGATC
1 AAAATGGTAATTTTAGG-AAATCTCGGGGTA
* * * **
89892 AAAATGG-AATTTTTGGAAGTTTTAGGGTA
1 AAAATGGTAATTTTAGGAAATCTCGGGGTA
** * ** * *
89921 AAAA-CATAATTTTTGGAAAAATTGGGGTC
1 AAAATGGTAATTTTAGGAAATCTCGGGGTA
89950 AAAATGG-AATTTTAGGAA
1 AAAATGGTAATTTTAGGAA
89968 GTTCATAATT
Statistics
Matches: 101, Mismatches: 26, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
27 5 0.05
28 10 0.10
29 49 0.49
30 25 0.25
31 12 0.12
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (30 bp):
AAAATGGTAATTTTAGGAAATCTCGGGGTA
Found at i:89896 original size:58 final size:58
Alignment explanation
Indices: 89803--89969 Score: 183
Period size: 58 Copynumber: 2.9 Consensus size: 58
89793 CTCGATGAGC
* ** * * *
89803 AAAATGGTAATTTTGGGAAAGTTCGGGGTAAAAAATGAAATTTTAGGAA-TCTGGGGGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGT-CAAAATGGAATTTTAGGAAGTCTGAGGGT
* * * *
89861 AAAATGGTAATTTTTGGAAAAAATCGGGATCAAAATGGAATTTTTGGAAGTTTTAGGGT
1 AAAATGGTAATTTTTGG-AAAAATCGGGGTCAAAATGGAATTTTAGGAAGTCTGAGGGT
*** *
89920 AAAAACATAATTTTTGGAAAAATTGGGGTCAAAATGGAATTTTAGGAAGT
1 AAAATGGTAATTTTTGGAAAAATCGGGGTCAAAATGGAATTTTAGGAAGT
89970 TCATAATTTT
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
58 62 0.68
59 29 0.32
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (58 bp):
AAAATGGTAATTTTTGGAAAAATCGGGGTCAAAATGGAATTTTAGGAAGTCTGAGGGT
Found at i:91252 original size:24 final size:24
Alignment explanation
Indices: 91205--91253 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
91195 TTTCATTTTC
* * *
91205 TATTTTTTTATTTTTAATATTAAA
1 TATTTATTTATTATTAATAATAAA
*
91229 TATTTATTTATTATTATTAATAAA
1 TATTTATTTATTATTAATAATAAA
91253 T
1 T
91254 TCAATTACTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTTATTTATTATTAATAATAAA
Done.