genome.fa.s12067.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012067.1 Kokia drynarioides strain JFW-HI SEQ_127065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74724

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101--130	2	15.5	2	93	6	53	50	0	0	50	1.00
492--682	103	1.9	103	81	4	233	25	24	14	36	1.93
1432--1496	13	5.3	12	72	20	55	76	0	3	20	0.91
1432--1495	18	3.7	17	78	21	71	76	0	3	20	0.92
6414--6460	21	2.2	22	96	3	87	72	0	10	17	1.12
6440--6469	16	1.9	16	93	6	53	66	0	16	16	1.25
6415--6470	21	2.6	19	86	10	58	71	0	12	16	1.15
6414--6474	22	2.8	22	85	7	81	70	0	13	16	1.17
7521--7565	23	1.9	24	86	4	65	46	6	4	42	1.50
11262--11320	31	1.9	31	82	6	75	64	0	0	35	0.94
11592--11637	19	2.3	20	78	17	51	65	4	0	30	1.12
12199--12363	82	2.0	82	98	0	321	20	21	9	49	1.76
14648--14931	23	12.3	23	83	3	320	33	7	13	45	1.72
14648--14927	115	2.4	115	89	0	434	33	7	13	45	1.72
16963--17009	15	3.1	15	93	0	76	14	29	4	51	1.62
34841--34945	45	2.3	44	80	4	120	30	16	23	29	1.96
35186--35265	19	4.3	19	84	4	101	38	1	23	36	1.63
35185--35253	9	7.4	9	69	18	52	40	1	23	34	1.64
41245--41306	19	3.3	18	82	8	70	37	1	22	38	1.64
43774--43829	29	1.9	29	85	0	76	64	5	3	26	1.32
46874--46907	17	2.0	17	94	0	59	14	17	14	52	1.74
57462--57486	12	2.1	12	100	0	50	24	8	28	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61067--61134	30	2.3	30	89	0	109	38	16	4	41	1.68
65218--65253	18	2.0	18	88	0	54	41	0	5	52	1.24
69176--69388	68	3.1	67	84	4	266	28	24	15	31	1.96
69209--69320	35	3.3	35	67	16	90	28	25	13	32	1.94
71391--71426	18	2.0	18	88	0	54	41	0	5	52	1.24
71484--71548	26	2.5	26	76	11	62	41	1	0	56	1.08
74536--74578	22	2.0	22	86	9	61	51	13	4	30	1.62

Tables:   1

The End!