genome.fa.s12068.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012068.1 Kokia drynarioides strain JFW-HI SEQ_127066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165466

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784--839	13	4.3	13	71	8	51	35	0	1	62	1.06
896--1130	83	2.7	87	77	10	253	45	10	10	34	1.72
962--1154	83	2.2	87	81	8	225	48	7	8	35	1.62
3119--3372	92	2.7	92	85	4	339	33	7	8	50	1.60
3261--3310	13	3.9	13	76	5	57	42	0	0	58	0.98
3269--3316	25	1.9	25	82	0	60	39	0	0	60	0.97
3123--3373	95	2.7	93	83	4	319	33	7	8	50	1.61
3428--3483	13	4.3	13	71	8	51	62	1	0	35	1.06
3700--3764	28	2.3	28	82	7	87	44	0	7	47	1.31
8817--8883	33	2.1	30	83	8	80	49	1	8	40	1.43
9927--9979	23	2.4	22	81	12	63	66	0	0	33	0.92
19415--19691	137	2.0	138	95	0	502	44	8	7	38	1.65
22737--22862	61	2.0	62	86	4	175	28	11	12	47	1.76
27152--27182	13	2.3	14	94	5	55	0	25	0	74	0.82
27606--27655	20	2.5	21	80	9	59	34	0	2	64	1.05
27601--27656	14	4.3	12	72	24	51	30	0	1	67	1.01
27602--27658	11	5.7	10	74	15	55	33	0	1	64	1.04
28312--28402	47	1.9	47	86	0	128	31	15	30	21	1.94
28733--28766	18	1.9	18	88	5	52	29	0	5	64	1.17
28902--28949	24	2.0	24	84	8	62	60	0	0	39	0.97
40625--40694	26	2.5	26	80	11	68	40	1	0	58	1.07
45518--45553	9	3.8	9	89	10	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46400--46443	23	1.9	23	100	0	88	38	27	18	15	1.91
46828--46885	26	2.2	26	100	0	116	25	31	6	36	1.83
46901--46946	19	2.6	18	83	16	60	58	0	0	41	0.98
50012--50087	12	6.5	12	77	11	59	10	1	19	68	1.26
50021--50063	11	3.8	11	87	6	59	13	0	16	69	1.19
50012--50063	23	2.3	23	86	0	68	13	0	17	69	1.19
50021--50088	23	2.9	23	84	2	73	10	1	19	69	1.25
50020--50108	23	4.1	20	73	19	63	10	1	20	68	1.25
50049--50094	12	3.8	12	79	0	56	6	2	19	71	1.18
50859--50899	15	2.9	15	78	7	50	43	0	0	56	0.99
55261--55345	35	2.4	35	100	0	170	36	15	8	40	1.77
56591--56653	29	2.2	29	85	0	81	42	1	1	53	1.19
57368--57418	22	2.3	22	81	15	61	66	0	0	33	0.92
57285--57404	62	1.9	62	86	6	172	54	0	1	43	1.16
57362--57418	20	3.0	20	78	19	68	64	0	0	35	0.93
66077--66126	25	2.0	25	84	0	64	50	2	0	48	1.12
66116--66159	17	2.6	17	81	0	52	45	2	6	45	1.42
66645--66687	21	2.0	23	86	9	63	41	0	2	55	1.12
69604--69711	9	11.9	9	70	23	59	62	1	3	32	1.24
70994--71050	23	2.5	23	97	0	105	63	0	10	26	1.27
80970--81036	35	1.9	35	93	0	116	43	23	5	26	1.77
85799--86124	131	2.5	131	78	3	307	36	19	9	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88018--88088	29	2.4	28	81	9	70	46	8	8	36	1.65
88848--88900	3	17.7	3	100	0	106	33	0	0	66	0.92
90625--90992	184	2.0	184	97	0	700	22	22	16	39	1.92
92632--92684	20	2.6	21	82	11	58	47	0	0	52	1.00
101065--101308	126	1.9	126	87	3	357	28	25	18	27	1.98
104913--104994	40	2.0	40	100	0	164	21	12	25	40	1.88
105637--105754	58	2.0	58	100	0	236	32	18	13	35	1.90
110348--110424	30	2.6	30	93	0	127	12	18	36	32	1.89
111623--111657	18	1.9	19	88	11	56	54	5	8	31	1.54
122580--122642	31	2.1	31	90	3	101	47	12	7	31	1.70
127459--127487	4	7.2	4	100	0	58	27	0	24	48	1.51
142592--142630	20	1.9	20	84	5	51	58	0	20	20	1.39
143747--143782	17	2.1	17	94	0	63	75	0	13	11	1.06
145595--145623	2	14.5	2	100	0	58	51	0	0	48	1.00
147949--147973	2	12.5	2	100	0	50	48	0	0	52	1.00
148599--148632	17	1.9	18	88	5	52	61	2	8	26	1.40
154086--154118	15	2.2	15	94	0	57	42	0	3	54	1.15
155346--155379	15	2.2	16	89	5	52	26	20	17	35	1.95
161037--161115	24	3.3	24	92	0	131	25	18	24	31	1.98
164153--164278	48	2.5	50	75	13	125	46	5	8	39	1.58
164684--165148	237	2.0	235	88	3	693	27	13	21	38	1.90

Tables:   1

The End!