genome.fa.s12074.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012074.1 Kokia drynarioides strain JFW-HI SEQ_127072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209051

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1281--1331	24	2.1	24	92	0	84	54	11	11	21	1.68
3243--3334	24	3.8	24	88	2	105	54	5	11	28	1.59
3474--3508	18	1.9	18	94	0	61	45	5	2	45	1.41
7688--8212	147	3.6	147	90	3	760	24	21	20	33	1.97
11874--11916	9	4.8	9	76	0	50	51	0	0	48	1.00
11887--11917	14	2.2	14	94	0	53	51	0	0	48	1.00
13984--14023	21	2.0	20	85	5	53	57	5	5	32	1.42
27977--28011	18	1.9	18	94	0	61	37	2	0	60	1.12
27984--28022	18	2.2	18	86	4	53	33	2	5	58	1.33
28016--28049	16	2.1	16	88	0	50	29	0	0	70	0.87
31257--31282	2	13.0	2	100	0	52	0	0	50	50	1.00
41191--41218	4	7.0	4	100	0	56	25	50	25	0	1.50
45635--45686	24	2.1	25	82	3	61	57	5	5	30	1.46
46256--46357	51	2.0	52	88	5	154	38	6	5	49	1.54
47680--47717	20	1.9	20	88	0	58	86	2	0	10	0.66
53325--53399	17	4.4	16	75	9	69	40	1	5	53	1.32
55023--55346	29	11.1	28	76	10	226	35	27	2	33	1.72
55021--55352	59	5.7	58	79	7	325	34	28	3	33	1.73
55454--55494	15	2.7	15	85	10	57	4	2	9	82	0.89
57081--57110	15	1.9	16	93	6	53	33	6	0	60	1.23
58244--58270	14	1.9	14	100	0	54	51	3	0	44	1.19
63822--64079	29	8.8	28	74	14	166	31	5	29	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63910--64080	29	5.7	30	80	12	183	31	4	30	32	1.78
65872--65942	17	4.1	17	78	9	72	52	5	0	42	1.25
68487--68598	29	3.9	28	68	10	73	45	14	11	28	1.79
70618--70643	2	13.0	2	100	0	52	50	0	0	50	1.00
71335--71402	33	2.1	33	100	0	136	22	23	17	36	1.94
80675--80730	29	1.9	29	89	7	87	41	16	14	28	1.87
80665--80732	29	2.4	28	83	11	86	39	16	14	29	1.88
83503--83546	22	2.0	22	86	0	61	34	0	4	61	1.16
83634--83685	24	2.1	26	85	7	72	63	0	0	36	0.95
83631--83716	33	2.6	33	76	14	88	63	0	0	36	0.94
88407--88443	15	2.3	17	86	9	51	40	5	0	54	1.24
96006--96042	16	2.2	17	90	4	58	56	2	0	40	1.13
96372--96412	22	1.9	21	90	5	64	41	2	2	53	1.27
96372--96418	22	2.1	22	84	7	60	42	2	2	53	1.25
98662--98693	15	2.1	15	94	0	55	18	21	40	18	1.91
102249--102286	6	6.3	6	96	0	67	2	50	28	18	1.61
123101--123139	17	2.3	17	95	0	69	56	17	10	15	1.66
124221--124281	31	2.0	31	86	0	86	37	6	8	47	1.59
126673--126714	22	1.9	22	85	9	59	40	19	0	40	1.51
128360--128438	40	2.0	40	100	0	158	40	8	10	40	1.70
137777--137837	27	2.3	26	78	15	63	31	1	6	60	1.32
150477--150568	45	2.0	45	91	0	148	28	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151274--151307	13	2.8	12	86	8	50	52	2	11	32	1.53
152471--152507	15	2.3	17	77	18	51	37	27	27	8	1.84
152475--152506	15	2.1	15	94	0	55	37	31	25	6	1.81
152491--152677	92	2.0	92	97	0	356	26	22	16	34	1.95
155313--155365	26	2.0	26	85	0	70	35	9	15	39	1.79
159057--159114	27	2.1	27	90	0	89	44	6	8	39	1.62
159513--159538	13	2.0	13	100	0	52	30	15	7	46	1.74
161959--162023	33	2.0	33	90	0	103	55	0	3	41	1.15
162861--162892	14	2.3	14	94	0	55	50	0	0	50	1.00
162968--163197	113	2.0	113	93	0	388	31	20	8	39	1.83
165424--165490	20	3.4	19	70	13	55	61	1	4	32	1.25
166703--166770	26	2.7	26	80	11	77	39	0	1	58	1.07
166724--166759	18	2.0	18	89	10	56	41	0	2	55	1.14
167543--167583	14	2.8	15	86	13	59	31	0	0	68	0.90
167545--167583	7	5.4	7	82	17	53	30	0	0	69	0.89
167723--167765	18	2.4	18	88	7	61	53	0	0	46	1.00
169012--169055	14	2.9	15	78	21	56	45	0	0	54	0.99
169983--170021	20	2.0	20	84	0	51	74	7	5	12	1.20
178428--178471	13	3.4	13	75	12	54	65	2	15	15	1.36
194269--194314	24	1.9	24	82	8	58	52	6	4	36	1.47
194540--194577	3	13.0	3	94	5	69	31	0	0	68	0.90
197864--197939	22	3.2	25	70	22	74	40	3	3	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197891--197996	31	3.5	29	75	12	79	41	4	1	51	1.33
201388--201450	25	2.4	26	76	7	65	34	4	3	57	1.36
206210--206254	23	2.0	23	82	8	56	51	2	8	37	1.46
206901--207149	111	2.2	109	80	8	279	34	12	20	32	1.89

Tables:   1

The End!