Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012087.1 Kokia drynarioides strain JFW-HI SEQ_127086, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23469
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:15407 original size:33 final size:33

Alignment explanation


    Indices: 15370--15437  Score: 136
    Period size: 33  Copynumber: 2.1  Consensus size: 33

      15360 CTTATTTTCC

                                             
      15370 TTAAGTTTAAAGCTTAAGCATTATAATTATTAT
          1 TTAAGTTTAAAGCTTAAGCATTATAATTATTAT

                                             
      15403 TTAAGTTTAAAGCTTAAGCATTATAATTATTAT
          1 TTAAGTTTAAAGCTTAAGCATTATAATTATTAT

              
      15436 TT
          1 TT

      15438 TACCATTTTA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47


Consensus pattern (33 bp):   
TTAAGTTTAAAGCTTAAGCATTATAATTATTAT

Found at i:21063 original size:21 final size:21

Alignment explanation


    Indices: 21011--21085  Score: 64
    Period size: 21  Copynumber: 3.6  Consensus size: 21

      21001 TGGTACAAAT

                         *      *
      21011 TTCTACTGATACATGTGATAG
          1 TTCTACTGATACAAGTGATAC

              *   *               
      21032 TTTTACCGATACAAGTGACT-C
          1 TTCTACTGATACAAGTGA-TAC

                             *    
      21053 TTCTACTGATACAAGT-TTCAC
          1 TTCTACTGATACAAGTGAT-AC

            *           
      21074 CTCTACTGATAC
          1 TTCTACTGATAC

      21086 TAAAAACTCT


Statistics
Matches: 43,  Mismatches: 8, Indels: 6
        0.75            0.14        0.11

Matches are distributed among these distances:
  19    1  0.02
  21   41  0.95
  22    1  0.02

ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36


Consensus pattern (21 bp):   
TTCTACTGATACAAGTGATAC
Done.