genome.fa.s12088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012088.1 Kokia drynarioides strain JFW-HI SEQ_127087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75098

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170--254	43	2.0	43	83	4	109	31	10	10	47	1.72
865--905	21	2.0	21	90	0	64	19	39	19	21	1.93
3101--3145	19	2.4	18	82	10	54	64	2	0	33	1.06
3185--3237	4	13.2	4	80	7	63	0	33	0	66	0.92
4654--4706	25	2.1	25	100	0	106	43	3	7	45	1.50
4751--4806	28	2.0	28	85	3	76	33	12	5	48	1.64
11726--11829	53	2.0	53	100	0	208	36	9	23	30	1.87
15607--15637	14	2.2	14	94	0	53	48	0	0	51	1.00
19177--19225	21	2.3	21	85	0	71	36	24	8	30	1.85
30341--30380	19	2.0	20	85	4	55	20	15	12	52	1.74
32222--32413	42	4.5	41	78	10	199	35	10	26	26	1.90
43097--43185	31	2.8	31	87	1	124	26	17	7	47	1.75
43654--43788	31	4.5	31	73	7	98	46	11	11	30	1.75
45182--45276	45	2.3	41	83	10	113	47	6	6	40	1.54
46053--46098	19	2.4	19	82	7	58	56	6	0	36	1.25
49706--49736	5	6.2	5	100	0	62	0	0	41	58	0.98
52838--53126	29	9.9	28	74	10	102	32	6	30	30	1.82
52844--52974	58	2.2	59	86	1	183	34	6	27	31	1.83
52889--53129	29	8.1	30	78	12	223	32	6	29	32	1.82
52889--53129	59	4.1	59	83	8	237	32	6	29	32	1.82
54232--54320	3	28.7	3	80	6	61	43	1	1	53	1.15
55021--55086	6	11.5	6	73	15	59	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55027--55086	17	3.5	17	93	0	102	51	0	0	48	1.00
55566--55647	29	2.8	27	80	15	92	50	8	2	39	1.46
59632--59754	28	4.3	28	70	13	90	33	1	28	36	1.67
59763--60070	30	10.4	29	81	8	291	33	2	26	37	1.72
59780--60070	89	3.3	89	85	2	379	34	2	26	37	1.71
59780--60070	59	4.9	58	82	9	286	34	2	26	37	1.71
61136--61182	12	3.7	12	81	18	51	40	4	2	53	1.32
61859--61895	17	2.2	17	90	0	56	56	2	2	37	1.28
64078--64118	14	2.8	15	75	20	50	31	0	0	68	0.90
64210--64250	15	2.6	15	84	7	55	31	0	4	63	1.15
64396--64465	31	2.3	31	80	11	74	50	12	2	34	1.56
64909--64952	21	2.1	21	82	0	52	13	2	6	77	1.07
65226--65299	27	2.7	26	81	8	76	56	8	17	17	1.64
65440--65523	32	2.7	31	83	7	107	60	5	15	17	1.54
65342--65518	30	6.0	30	69	12	116	58	6	16	18	1.59
71351--71401	21	2.4	21	90	6	77	37	5	5	50	1.51
71399--71459	24	2.6	25	72	15	58	34	6	1	57	1.34
73115--73165	18	2.7	18	85	11	59	58	3	0	37	1.16
73404--73450	23	2.0	23	84	8	60	34	6	2	57	1.36
74417--74470	23	2.2	24	87	6	74	66	3	5	24	1.29

Tables:   1

The End!